BAC Information

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BAC

Clone NameB6Ng01-239D10
Chromosome14 (Build37)
Map Location 13,198,742 - 13,199,889
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667059, LOC100041996, Ptprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2
Downstream geneCadps, EG432822, LOC100042022, LOC100042026, EG328354, Synpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239D10.bB6Ng01-239D10.g
ACCGA049698GA049699
length1,1951,150
definitionB6Ng01-239D10.b B6Ng01-239D10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacaataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttattacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacctccttagtagagtcacgccaagatattttatattatt
tgtgactattgagaagggtgttgtttcccttatttctttctcagcctgtt
taattcctttgtatagagaacggccaattgacttgtttggagtttatttt
tatatccaggctactttcacgaaagcttgtttatcagtttagagttctct
gctagaatttttaagggtcacttatatatacctatcaattcattgcaaac
gtgaaatattgaacgtctcttttccaaaattggtaattccccatg
gaattcagtaggcaatcaatacatgttgattggattgaaggaacaaacat
cagacctaagtatgatcatgaccctaaaagcataaatgtattgtcatggg
gttttttggtgtgtgacatatgtatatgtgttatgtgtgcatgtatgtgt
accccacagctcctgatgtgggttcttgccttctaccttgagacaggatt
tctttgttgttcactcatcatagtgtatgacaggttaacttaccaatagg
tccccaggagttcttctgtctctgcatcctatgtttcttcagaagcactg
ggattacaggcatgagctgctgtggctggctttttgcaagtcctggcagt
gcaagctcagactttcatgtttgtatagcaagcattttacccactgagac
gtcttcccaggaccatggtctttttgttttctttaagtatcatggtagaa
gacagaaaactatgcatttcaccacaaatgtgacttgaatttcccataga
ggattgaacaaccatgctgtcggagtttgtgtttctagatgaattttata
aagtccaccaaacaaccagagttacatcattactacttaaacacaaagtt
taataagttgatttcttttgaatgagacccaaaataagtgtgttccttgt
ggctagcttccaccaaatacatgattagcaaatctgaaatgaaatcgaat
tatgcatatttttgcaatacttgttaaacaatttttcaaaataaatattc
atcttttattcaaggttgttttgctccttcatctaaatactaaaattatc
atttgttttccttttagtgaaatcatgcatttcatccatagttataaatc
tgcttttgttataactaagcaaaacatgcgaacaggggtggctggggtgc
cgtctgtcggcagagttctctaccctaacgacagtacattgaagctcaaa
ggaaaaccctgagcaacaaattaaatcacagccatcagctagcaagggga
taaaacaattgactactagttaccacaatgccaaggacagagcgcaaggc
acagttccggcaggagcacagaagaaacttttctagcctcctataatgaa
tgatgggaaggccagacaggctgcatcacgatagcctgtgtttttctgcc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_13198742_13199889
seq2: B6Ng01-239D10.g_69_1218 (reverse)

seq1  GGCAGAAAAACACCAGCCTAATCGTGATTGCA-ACTGTCTTGCCCTCCCA  49
      |||||||||||| ||| || ||||||| ||||  |||||| ||| |||||
seq2  GGCAGAAAAACA-CAGGCT-ATCGTGA-TGCAGCCTGTCTGGCCTTCCCA  47

seq1  TCA-TCATTATAGGA-GCTAAGAAAGTTTC-TCTGTGCTCCTGCCGG-AC  95
      ||| ||||||||||| ||||  |||||||| |||||||||||||||| ||
seq2  TCATTCATTATAGGAGGCTAGAAAAGTTTCTTCTGTGCTCCTGCCGGAAC  97

seq1  TGTGCCTTTGCGCTCTGTTCCTTTGGCATTGT-GTAACTAGTAGTC-ATT  143
      |||||| |||||||||||  | |||||||||| ||||||||||||| |||
seq2  TGTGCC-TTGCGCTCTGT--CCTTGGCATTGTGGTAACTAGTAGTCAATT  144

seq1  GTTTTATCCCCTTGCTAGCTGATGGCTGTGA-TTAATTTGTTGCTCAGGG  192
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTTTTATCCCCTTGCTAGCTGATGGCTGTGATTTAATTTGTTGCTCAGGG  194

seq1  TTTTCCTTTGAGCTTCAATGTACTGTCGTTAGGGTAGAGAACTCTGCCGA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTGAGCTTCAATGTACTGTCGTTAGGGTAGAGAACTCTGCCGA  244

seq1  CAGACGGCACCCCAGCCACCCCTGTTCGCATGTTTTGCTTAGTTATAACA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGGCACCCCAGCCACCCCTGTTCGCATGTTTTGCTTAGTTATAACA  294

seq1  AAAGCAGATTTATAACTATGGATGAAATGCATGATTTCACTAAAAGGAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGATTTATAACTATGGATGAAATGCATGATTTCACTAAAAGGAAA  344

seq1  ACAAATGATAATTTTAGTATTTAGATGAAGGAGCAAAACAACCTTGAATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGATAATTTTAGTATTTAGATGAAGGAGCAAAACAACCTTGAATA  394

seq1  AAAGATGAATATTTATTTTGAAAAATTGTTTAACAAGTATTGCAAAAATA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAATATTTATTTTGAAAAATTGTTTAACAAGTATTGCAAAAATA  444

seq1  TGCATAATTCGATTTCATTTCAGATTTGCTAATCATGTATTTGGTGGAAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATTCGATTTCATTTCAGATTTGCTAATCATGTATTTGGTGGAAG  494

seq1  CTAGCCACAAGGAACACACTTATTTTGGGTCTCATTCAAAAGAAATCAAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCACAAGGAACACACTTATTTTGGGTCTCATTCAAAAGAAATCAAC  544

seq1  TTATTAAACTTTGTGTTTAAGTAGTAATGATGTAACTCTGGTTGTTTGGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAACTTTGTGTTTAAGTAGTAATGATGTAACTCTGGTTGTTTGGT  594

seq1  GGACTTTATAAAATTCATCTAGAAACACAAACTCCGACAGCATGGTTGTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTATAAAATTCATCTAGAAACACAAACTCCGACAGCATGGTTGTT  644

seq1  CAATCCTCTATGGGAAATTCAAGTCACATTTGTGGTGAAATGCATAGTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCTATGGGAAATTCAAGTCACATTTGTGGTGAAATGCATAGTTT  694

seq1  TCTGTCTTCTACCATGATACTTAAAGAAAACAAAAAGACCATGGTCCTGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCTACCATGATACTTAAAGAAAACAAAAAGACCATGGTCCTGG  744

seq1  GAAGACGTCTCAGTGGGTAAAATGCTTGCTATACAAACATGAAAGTCTGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACGTCTCAGTGGGTAAAATGCTTGCTATACAAACATGAAAGTCTGA  794

seq1  GCTTGCACTGCCAGGACTTGCAAAAAGCCAGCCACAGCAGCTCATGCCTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACTGCCAGGACTTGCAAAAAGCCAGCCACAGCAGCTCATGCCTG  844

seq1  TAATCCCAGTGCTTCTGAAGAAACATAGGATGCAGAGACAGAAGAACTCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGTGCTTCTGAAGAAACATAGGATGCAGAGACAGAAGAACTCC  894

seq1  TGGGGACCTATTGGTAAGTTAACCTGTCATACACTATGATGAGTGAACAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCTATTGGTAAGTTAACCTGTCATACACTATGATGAGTGAACAA  944

seq1  CAAAGAAATCCTGTCTCAAGGTAGAAGGCAAGAACCCACATCAGGAGCTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAATCCTGTCTCAAGGTAGAAGGCAAGAACCCACATCAGGAGCTG  994

seq1  TGGGGTACACATACATGCACACATAACACATATACATATGTCACACACCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTACACATACATGCACACATAACACATATACATATGTCACACACCA  1044

seq1  AAAAACCCCATGACAATACATTTATGCTTTTAGGGTCATGATCATACTTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCCATGACAATACATTTATGCTTTTAGGGTCATGATCATACTTA  1094

seq1  GGTCTGATGTTTGTTCCTTCAATCCAATCAACATGTATTGATTGCCTACT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGATGTTTGTTCCTTCAATCCAATCAACATGTATTGATTGCCTACT  1144

seq1  GAATTC  1148
      ||||||
seq2  GAATTC  1150