BAC Information

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BAC

Clone NameB6Ng01-239H16
Chromosome14 (Build37)
Map Location 38,837,009 - 38,955,892
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm, LOC382871, LOC382872
Downstream geneNrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239H16.bB6Ng01-239H16.g
ACCGA049892GA049893
length9171,112
definitionB6Ng01-239H16.b B6Ng01-239H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,954,990 - 38,955,892)(38,837,009 - 38,838,122)
sequence
gaattccaaggtcaggaagcaggagtaggtggttggtgagtaggtggtgg
ggtgaagagataggggattttcggagggtaaactaggaaagggaataaca
tttgaaatgcaaataaagaaaatatctaagaaaaaagaaaaataaataaa
taaataaaataaatcattttttaaaactcataaaatatcagagaaatatt
tataacttttatttaaattaacttttagttgcaagaattttctcctaata
ttctaggtataaaaagactcagaataagttgaaagaaagtataccatata
tgagtgacaaatgaggtataattgaagcatgctctaatagatactagaag
gacaggtggaggggacagaagagttcaaacaaagcatttataaacacgag
tattattactaaggaaagaacatacataaatgtttcctattttctgcctc
agcagacacacttttttccagtatatataacaagaagagggtgcctgaaa
gtttacacctccacgttgctcctgacagatatttcagctcccacactggt
gctttcttattgatgatctttaggcaaccttcctgacactccatctctac
atttgaacctgagatgctattcttatagattttcttcttttatgaaatta
attccattgattttttctttctgtttttttggttcctatgagcacacatt
actgactatttttttttttttcaaaattttaaacacattgtggataccct
tggtatttcccctaattcttcttttctcctgtaaagcaaaatctgtggaa
tatgttttctggttatcttttttccatcttcctctgcctctctaaaacct
gtgtacctacacactcacaggttcatacttcacccctcccttgaaaccac
tttcaggtcaaggttat
gaattccattttcaatgtgcatacatgtgaacatgcctcattgaacacat
acatacataattgttaataaataaataaataaataaatcttattttaaag
agatgaaagagattgttatctaattttgtttactattgttcattggtaca
tacacttttcaacttttttattaatcattttatttatttacatttcaaat
gatatatcccttccccatttcccttccttaacctcccagtcctatctccc
ttcttctttgcctctatgagggcactcctccactcactcaaccactccca
cctcactgttctagcatcctcctagatgctgagacatcaagcctccaatg
caccttctcactgatgccagataagaacatcctctgctacatatgtagct
ggagccatgaaaccttccatatatactatttgggtggtgttttggtccct
gggtattctgggtggcccttttttaaaaattatctaatatgtttaataga
tactgtaatgagtggttttctcaaagctatgcagtaaatttgaaatgatt
aagatgaataatgaaatcaatagatgaaattaaaatatcattatcattgc
attttcaagatatagatgaaaagctacaattcttaaaatgtcggtaggct
tatatttattcattaatgttattcactcacttgttattgagacaaacctg
cttctaacagcctcctattcatggattcaaagaagcaactgagcatctta
cctccaggtgaggttgttcagtgtggctaggtggccactaggcagaaatt
gtcaatctctcctgcagtcctgtactgttgttgaaaggacacaatttaca
gattaggacagcttagttctgctgagacagaatgggatagtccttaatac
tttctatatttcaaagatctgtcagatgatcctgggccagaagactgaag
actgatgctccaacttcctgacttactcagctgtatcttaagcagctgtc
tcttcaacttgtctcactctggaagctgtgttagacctcccgtatctcag
atatgttggtcattctcggatttctgacgggattgaaagaactaccttat
agtcctcatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_38954990_38955892
seq2: B6Ng01-239H16.b_46_962 (reverse)

seq1  ATAACCTTGACCTG-AAGT-GTTTCAAGGGA-GGGTG-AGTATGA--CTG  44
      |||||||||||||| |||| ||||||||||| ||||| |||||||  |||
seq2  ATAACCTTGACCTGAAAGTGGTTTCAAGGGAGGGGTGAAGTATGAACCTG  50

seq1  TGAGTGTGTAGGTACACAGGTTTTAGAGA-GCAGAGG-AGATGG-AAAAA  91
      ||||||||||||||||||||||||||||| ||||||| |||||| |||||
seq2  TGAGTGTGTAGGTACACAGGTTTTAGAGAGGCAGAGGAAGATGGAAAAAA  100

seq1  GATAACCAGAAAACATTTTCCACAGATTTTGCTTTACAGGAGAAAAGAAG  141
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATAACCAGAAAACATATTCCACAGATTTTGCTTTACAGGAGAAAAGAAG  150

seq1  AATTAGGGGAAATACCAAGGGTATCCACAATGTGTTTAAAATTTTG--AA  189
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  AATTAGGGGAAATACCAAGGGTATCCACAATGTGTTTAAAATTTTGAAAA  200

seq1  AAAAAAAAATAGTCAGTAATGTGTGCTCATAGGAACC-AAAAAACAGAAA  238
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAAAAAAATAGTCAGTAATGTGTGCTCATAGGAACCAAAAAAACAGAAA  250

seq1  G-AAAAATCAATGGAATTAA-TTCATAAAAGAAGAAAATCTATAAGAATA  286
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAAAAATCAATGGAATTAATTTCATAAAAGAAGAAAATCTATAAGAATA  300

seq1  GCATCTCAGGTTCAAATGTAGAGATGGAGTGTCAGGAAGGTTGCCTAAAG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCAGGTTCAAATGTAGAGATGGAGTGTCAGGAAGGTTGCCTAAAG  350

seq1  ATCATCAATAAGAAAGCACCAGTGTGGGAGCTGAAATATCTGTCAGGAGC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAATAAGAAAGCACCAGTGTGGGAGCTGAAATATCTGTCAGGAGC  400

seq1  AACGTGGAGGTGTAAACTTTCAGGCACCCTCTTCTTGTTATATATACTGG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGGAGGTGTAAACTTTCAGGCACCCTCTTCTTGTTATATATACTGG  450

seq1  AAAAAAGTGTGTCTGCTGAGGCAGAAAATAGGAAACATTTATGTATGTTC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTGTGTCTGCTGAGGCAGAAAATAGGAAACATTTATGTATGTTC  500

seq1  TTTCCTTAGTAATAATACTCGTGTTTATAAATGCTTTGTTTGAACTCTTC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAGTAATAATACTCGTGTTTATAAATGCTTTGTTTGAACTCTTC  550

seq1  TGTCCCCTCCACCTGTCCTTCTAGTATCTATTAGAGCATGCTTCAATTAT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCTCCACCTGTCCTTCTAGTATCTATTAGAGCATGCTTCAATTAT  600

seq1  ACCTCATTTGTCACTCATATATGGTATACTTTCTTTCAACTTATTCTGAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATTTGTCACTCATATATGGTATACTTTCTTTCAACTTATTCTGAG  650

seq1  TCTTTTTATACCTAGAATATTAGGAGAAAATTCTTGCAACTAAAAGTTAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATACCTAGAATATTAGGAGAAAATTCTTGCAACTAAAAGTTAA  700

seq1  TTTAAATAAAAGTTATAAATATTTCTCTGATATTTTATGAGTTTTAAAAA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAAAGTTATAAATATTTCTCTGATATTTTATGAGTTTTAAAAA  750

seq1  ATGATTTATTTTATTTATTTATTTATTTTTCTTTTTTCTTAGATATTTTC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTATTTTATTTATTTATTTATTTTTCTTTTTTCTTAGATATTTTC  800

seq1  TTTATTTGCATTTCAAATGTTATTCCCTTTCCTAGTTTACCCTCCGAAAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGCATTTCAAATGTTATTCCCTTTCCTAGTTTACCCTCCGAAAA  850

seq1  TCCCCTATCTCTTCACCCCACCACCTACTCACCAACCACCTACTCCTGCT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTATCTCTTCACCCCACCACCTACTCACCAACCACCTACTCCTGCT  900

seq1  TCCTGACCTTGGAATTC  903
      |||||||||||||||||
seq2  TCCTGACCTTGGAATTC  917

seq1: chr14_38837009_38838122
seq2: B6Ng01-239H16.g_62_1173

seq1  GAATTCCATTTTCAATGTGCATACATGTGAACATGCCTCATTGAACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTCAATGTGCATACATGTGAACATGCCTCATTGAACACAT  50

seq1  ACATACATAATTGTTAATAAATAAATAAATAAATAAATCTTATTTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATAATTGTTAATAAATAAATAAATAAATAAATCTTATTTTAAAG  100

seq1  AGATGAAAGAGATTGTTATCTAATTTTGTTTACTATTGTTCATTGGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAGAGATTGTTATCTAATTTTGTTTACTATTGTTCATTGGTACA  150

seq1  TACACTTTTCAACTTTTTTATTAATCATTTTATTTATTTACATTTCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTTCAACTTTTTTATTAATCATTTTATTTATTTACATTTCAAAT  200

seq1  GATATATCCCTTCCCCATTTCCCTTCCTTAACCTCCCAGTCCTATCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATCCCTTCCCCATTTCCCTTCCTTAACCTCCCAGTCCTATCTCCC  250

seq1  TTCTTCTTTGCCTCTATGAGGGCACTCCTCCACTCACTCAACCACTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTGCCTCTATGAGGGCACTCCTCCACTCACTCAACCACTCCCA  300

seq1  CCTCACTGTTCTAGCATCCTCCTAGATGCTGAGACATCAAGCCTCCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGTTCTAGCATCCTCCTAGATGCTGAGACATCAAGCCTCCAATG  350

seq1  CACCTTCTCACTGATGCCAGATAAGAACATCCTCTGCTACATATGTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTCACTGATGCCAGATAAGAACATCCTCTGCTACATATGTAGCT  400

seq1  GGAGCCATGAAACCTTCCATATATACTATTTGGGTGGTGTTTTGGTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATGAAACCTTCCATATATACTATTTGGGTGGTGTTTTGGTCCCT  450

seq1  GGGTATTCTGGGTGGCCCTTTTTTAAAAATTATCTAATATGTTTAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTCTGGGTGGCCCTTTTTTAAAAATTATCTAATATGTTTAATAGA  500

seq1  TACTGTAATGAGTGGTTTTCTCAAAGCTATGCAGTAAATTTGAAATGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAATGAGTGGTTTTCTCAAAGCTATGCAGTAAATTTGAAATGATT  550

seq1  AAGATGAATAATGAAATCAATAGATGAAATTAAAATATCATTATCATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAATAATGAAATCAATAGATGAAATTAAAATATCATTATCATTGC  600

seq1  ATTTTCAAGATATAGATGAAAAGCTACAATTCTTAAAATGTCGGTAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAGATATAGATGAAAAGCTACAATTCTTAAAATGTCGGTAGGCT  650

seq1  TATATTTATTCATTAATGTTATTCACTCACTTGTTATTGAGACAAACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATTCATTAATGTTATTCACTCACTTGTTATTGAGACAAACCTG  700

seq1  CTTCTAACAGCCTCCTATTCATGGATTCAAAGAAGCAACTGAGCATCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAACAGCCTCCTATTCATGGATTCAAAGAAGCAACTGAGCATCTTA  750

seq1  CCTCCAGGTGAGGTTGTTCAGTGTGGCTAGGTGGCCACTAGGCAGAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGTGAGGTTGTTCAGTGTGGCTAGGTGGCCACTAGGCAGAAATT  800

seq1  GTCAATCTCTCCTGCAGTCCTGTACTGTTGTTGAAAGGACACAATTTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCTCTCCTGCAGTCCTGTACTGTTGTTGAAAGGACACAATTTACA  850

seq1  GATTAGGACAGCTTAGTTCTGCTGAGACAGAATGGGATAGTCCTTAATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGACAGCTTAGTTCTGCTGAGACAGAATGGGATAGTCCTTAATAC  900

seq1  TTTCTATATTTCAAAGATCTGTCAGATGATCCTGGGCCAGAAGACTGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATTTCAAAGATCTGTCAGATGATCCTGGGCCAGAAGACTGAAG  950

seq1  ACTGATGCTCCAACTTCCTGACTTACTCAGGCTGTATCTTTAAGCAGCTG  1000
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  ACTGATGCTCCAACTTCCTGACTTACTCA-GCTGTATC-TTAAGCAGCTG  998

seq1  TCTCTTCAACTTGTCTCACTTCTGGAAGCTGTGTTAGACCTCCCGTATCT  1050
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  TCTCTTCAACTTGTCTCAC-TCTGGAAGCTGTGTTAGACCTCCCGTATC-  1046

seq1  TCAGATAATGTTGGTCATTCTCGAATTTCTGACGGGATTGAAAG-ACTA-  1098
      |||||| |||||||||||||||| |||||||||||||||||||| |||| 
seq2  TCAGAT-ATGTTGGTCATTCTCGGATTTCTGACGGGATTGAAAGAACTAC  1095

seq1  CTTATAGT-CTCATAGC  1114
      |||||||| ||||||||
seq2  CTTATAGTCCTCATAGC  1112