BAC Information

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BAC

Clone NameB6Ng01-239H17
Chromosome14 (Build37)
Map Location 46,558,841 - 46,699,165
singlet/doubletdoublet
Overlap geneLOC625377
Upstream genePtger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685
Downstream geneLOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239H17.bB6Ng01-239H17.g
ACCGA049894GA049895
length1,1131,046
definitionB6Ng01-239H17.b B6Ng01-239H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,698,040 - 46,699,165)(46,558,841 - 46,559,696)
sequence
gaattcaattcttaaacttcatttgagctattcaagaagtaaactctact
tccaatgactaattccatgatgaaggaagtctaaagtttgagttcaccac
ttagagacaaaattgaatcactgctgagaaagaagagcctacataggtag
aacaaagtggtaagagctgattcttgacctacactatacccaaaggcaga
gttgtggactttatccagtttgggaaccaatgacaccaattttgcttaaa
gtgattgatttagactttttgtcacattcagacagagagatcctaagagt
tttagtgaatgggtgaaactgtcctaaaatctgagctatagtgcatgata
actaagccaataagcactctggctagtacacacactacattcttctagct
cattctttagcacattcacttccatcccagcctttcctgtgtgaaatagc
atgcagtcatggctctaggccatttcatcttgtctcccaaacaaccttta
aagctatttctcatcactaatatcttagtgataccttatgtaatatctta
gcccactagaagccttgcatgacttaaaacatttctccatatagaaagga
aaagtttacatctcaggataaccattcagaagtggcaaagttaatatgtt
tctgaggaaaaaaaaagagaaatttttatgattgtactatattctggctc
acagcattgcagttttctatcttgacattagggaagaaacaagatgtgct
taagagagagccctcgatttcagaactgagcagtttttgtgcccgtcaca
ccaatcactgagtcttgatgtgcccacctgccttgtgtggatttttacaa
taatcaccaagagactatgaatgaaatattcttgttactttttttaaaaa
taatgtctcatttcctaaatgtgacattgagagagaaaaacctcttggct
tagctatgtggactttatttttatcacttaactacattgggtctcgtctg
atcatacattgagtgaaaaggggacattcaatcagccatttcttgcgcaa
aagtgtgtactacagttcacaagagccagtctcaagtgcctagctagagt
ggctcacagtaaa
gaattcctgatctttccaagacttttaacatgaaggggtgttggattttg
tcaaatactttctcagcatctaattaaatgatcatgtggtgttttttttc
cttgagtttgtttatgtagtggattatgttgatagaagagaacttggaca
catgggcacaggggaaaagttcctgagcagaacaccaatggcttatgctc
taagatcaagaatcaacaaatgggaccacataaaattgcaaagctcctgt
aaggcaaaggacactgtcaataggacaaaatggcaaccaacagattggga
aaagatctttaccaatcctacatctgatagagggctaatatccaatatat
acaaagaactcaaaaagttagattccagagaaccaaataaccctattaaa
aaacttgggggacagagctaaacagagagttgtcaactgagaaaactgag
gaaagttgagggctcagaaacacctaaagaaatgttcaatatccttagtc
atcagggaaatacaaatcaaaacaaccctgagattccacctcacaccagt
tagaatggctaagatgaaaaactcaggtgacagcagatgctggggagggt
gtggagaaagaggaacccttctccattgctggtgggattgcaagctggta
caaccactctggaatttttatcttttgattaatacagctaaggggaaaat
gctgagacaaaaggtgggggagagagttgtagagacagccaggatcacga
tgccagtcgagtggctcatgaacttggtgatgtcagactcacctacaggg
cacaggcacaatcttagaatacccattgctgtgtccagaagagcttttct
atgccaacctttgatctaagtttgcctgtggcaagcaaagataatgctaa
ctgacattttcattttcttagttgagcaatagctttctgacataattggc
ctgctttccattgactttggagcattcaagggaaaccttgtgccaacaac
cagcctcagctccacatcacataccttggtcatccttgttttctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_46698040_46699165
seq2: B6Ng01-239H17.b_41_1153 (reverse)

seq1  TTTACTTGTGAGCCACTTCTAGCTAGCCAACTTGGAGGACTGGGCTCTTG  50
      ||||| |||||||||| ||||||||| | |||||   |||| ||||||||
seq2  TTTAC-TGTGAGCCAC-TCTAGCTAGGC-ACTTG--AGACT-GGCTCTTG  44

seq1  GTTGAACCTGTAGTACACACTTTTGCGCCAAGAAATGGCTGATTGAAATG  100
        |||| |||||||||||||||||||| |||||||||||||||||||   
seq2  --TGAA-CTGTAGTACACACTTTTGCG-CAAGAAATGGCTGATTGAA--T  88

seq1  GTCCCCTTTTCACTCAATGTTATGATCAGACGAGGACCAATGTAGTTAAG  150
      ||||||||||||||||||| ||||||||||||||  ||||||||||||||
seq2  GTCCCCTTTTCACTCAATG-TATGATCAGACGAGACCCAATGTAGTTAAG  137

seq1  TGATAAAAATAAAGTCCACATAGCTAAGCCAAGAGGTTTTTCTCTCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAATAAAGTCCACATAGCTAAGCCAAGAGGTTTTTCTCTCTCAA  187

seq1  TGTCACATTTAGGAAATGAGACATTATTTTTAAAAAAAGTAACAAGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATTTAGGAAATGAGACATTATTTTTAAAAAAAGTAACAAGAATA  237

seq1  TTTCATTCATAGTCTCTTGGTGATTATTGTAAAAATCCACACAAGGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCATAGTCTCTTGGTGATTATTGTAAAAATCCACACAAGGCAGG  287

seq1  TGGGCACATCAAGACTCAGTGATTGGTGTGACGGGCACAAAAACTGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACATCAAGACTCAGTGATTGGTGTGACGGGCACAAAAACTGCTCA  337

seq1  GTTCTGAAATCGAGGGCTCTCTCTTAAGCACATCTTGTTTCTTCCCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAAATCGAGGGCTCTCTCTTAAGCACATCTTGTTTCTTCCCTAAT  387

seq1  GTCAAGATAGAAAACTGCAATGCTGTGAGCCAGAATATAGTACAATCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGATAGAAAACTGCAATGCTGTGAGCCAGAATATAGTACAATCATA  437

seq1  AAAATTTCTCTTTTTTTTTCCTCAGAAACATATTAACTTTGCCACTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTCTTTTTTTTTCCTCAGAAACATATTAACTTTGCCACTTCTG  487

seq1  AATGGTTATCCTGAGATGTAAACTTTTCCTTTCTATATGGAGAAATGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTATCCTGAGATGTAAACTTTTCCTTTCTATATGGAGAAATGTTT  537

seq1  TAAGTCATGCAAGGCTTCTAGTGGGCTAAGATATTACATAAGGTATCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATGCAAGGCTTCTAGTGGGCTAAGATATTACATAAGGTATCACT  587

seq1  AAGATATTAGTGATGAGAAATAGCTTTAAAGGTTGTTTGGGAGACAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTAGTGATGAGAAATAGCTTTAAAGGTTGTTTGGGAGACAAGAT  637

seq1  GAAATGGCCTAGAGCCATGACTGCATGCTATTTCACACAGGAAAGGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCCTAGAGCCATGACTGCATGCTATTTCACACAGGAAAGGCTGG  687

seq1  GATGGAAGTGAATGTGCTAAAGAATGAGCTAGAAGAATGTAGTGTGTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAGTGAATGTGCTAAAGAATGAGCTAGAAGAATGTAGTGTGTGTA  737

seq1  CTAGCCAGAGTGCTTATTGGCTTAGTTATCATGCACTATAGCTCAGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAGAGTGCTTATTGGCTTAGTTATCATGCACTATAGCTCAGATTT  787

seq1  TAGGACAGTTTCACCCATTCACTAAAACTCTTAGGATCTCTCTGTCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGTTTCACCCATTCACTAAAACTCTTAGGATCTCTCTGTCTGAA  837

seq1  TGTGACAAAAAGTCTAAATCAATCACTTTAAGCAAAATTGGTGTCATTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAAAAGTCTAAATCAATCACTTTAAGCAAAATTGGTGTCATTGG  887

seq1  TTCCCAAACTGGATAAAGTCCACAACTCTGCCTTTGGGTATAGTGTAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAACTGGATAAAGTCCACAACTCTGCCTTTGGGTATAGTGTAGGT  937

seq1  CAAGAATCAGCTCTTACCACTTTGTTCTACCTATGTAGGCTCTTCTTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATCAGCTCTTACCACTTTGTTCTACCTATGTAGGCTCTTCTTTCT  987

seq1  CAGCAGTGATTCAATTTTGTCTCTAAGTGGTGAACTCAAACTTTAGACTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGATTCAATTTTGTCTCTAAGTGGTGAACTCAAACTTTAGACTT  1037

seq1  CCTTCATCATGGAATTAGTCATTGGAAGTAGAGTTTACTTCTTGAATAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCATGGAATTAGTCATTGGAAGTAGAGTTTACTTCTTGAATAGC  1087

seq1  TCAAATGAAGTTTAAGAATTGAATTC  1126
      ||||||||||||||||||||||||||
seq2  TCAAATGAAGTTTAAGAATTGAATTC  1113

seq1: chr14_46558841_46559696
seq2: B6Ng01-239H17.g_233_1111

seq1  AGTTCCTGAGCAGAACACCAATGGCTTATGCTCTAAGATCAAGAATCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGAGCAGAACACCAATGGCTTATGCTCTAAGATCAAGAATCAAC  50

seq1  AAATGGGACCACATAAAATTGCAAAGCTCCTGTAAGGCAAAGGACACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGACCACATAAAATTGCAAAGCTCCTGTAAGGCAAAGGACACTGT  100

seq1  CAATAGGACAAAATGGCAACCAACAGATTGGGAAAAGATCTTTACCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGACAAAATGGCAACCAACAGATTGGGAAAAGATCTTTACCAATC  150

seq1  CTACATCTGATAGAGGGCTAATATCCAATATATACAAAGAACTCAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTGATAGAGGGCTAATATCCAATATATACAAAGAACTCAAAAAG  200

seq1  TTAGATTCCAGAGAACCAAATAACCCTATTAAAAAACTTGGGGGACAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTCCAGAGAACCAAATAACCCTATTAAAAAACTTGGGGGACAGAG  250

seq1  CTAAACAGAGAGTTGTCAACTGAGAAAACTGAGGAAAGTTGAGGGCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGAGAGTTGTCAACTGAGAAAACTGAGGAAAGTTGAGGGCTCAG  300

seq1  AAACACCTAAAGAAATGTTCAATATCCTTAGTCATCAGGGAAATACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTAAAGAAATGTTCAATATCCTTAGTCATCAGGGAAATACAAAT  350

seq1  CAAAACAACCCTGAGATTCCACCTCACACCAGTTAGAATGGCTAAGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAACCCTGAGATTCCACCTCACACCAGTTAGAATGGCTAAGATGA  400

seq1  AAAACTCAGGTGACAGCAGATGCTGGGGAGGGTGTGGAGAAAGAGGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCAGGTGACAGCAGATGCTGGGGAGGGTGTGGAGAAAGAGGAACC  450

seq1  CTTCTCCATTGCTGGTGGGATTGCAAGCTGGTACAACCACTCTGGAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCATTGCTGGTGGGATTGCAAGCTGGTACAACCACTCTGGAATTT  500

seq1  TTATCTTTTGATTAATACAGCTAAGGGGAAAATGCTGAGACAAAAGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTTGATTAATACAGCTAAGGGGAAAATGCTGAGACAAAAGGTGG  550

seq1  GGGAGAGAGTTGTAGAGACAGCCAGGATCACGATGCCAGTCGAGTGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGTTGTAGAGACAGCCAGGATCACGATGCCAGTCGAGTGGCTC  600

seq1  ATGAACTTGGTGATGTCAGACTCACCTACAGGGCACAGGCACAATCTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTGGTGATGTCAGACTCACCTACAGGGCACAGGCACAATCTTAG  650

seq1  AATACCCATTGCTGTGTCCAGAAGAGC-TTTCTATGCCAACC-TTGATCT  698
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  AATACCCATTGCTGTGTCCAGAAGAGCTTTTCTATGCCAACCTTTGATCT  700

seq1  AAGTT--GCTGTGGCAGGCAAGGATAATGCTAACTGACA-TTTCATTT--  743
      |||||   |||||||| |||| ||||||||||||||||| ||||||||  
seq2  AAGTTTGCCTGTGGCAAGCAAAGATAATGCTAACTGACATTTTCATTTTC  750

seq1  CTAG-TGAGCAATAGCTTTCTGACATAAT--GGCTGC-TTCCA-TGACTT  788
       ||| ||||||||||||||||||||||||  | |||| ||||| ||||||
seq2  TTAGTTGAGCAATAGCTTTCTGACATAATTGGCCTGCTTTCCATTGACTT  800

seq1  --GAGCATCAAAGGGAAAC--TTTGGCAACAA-CAGCC-CAGCT-CACAT  831
        ||||||  |||||||||  | || |||||| ||||| ||||| |||||
seq2  TGGAGCATTCAAGGGAAACCTTGTGCCAACAACCAGCCTCAGCTCCACAT  850

seq1  CACATA-CTTGGTCATCC---TGTTCTAA  856
      |||||| |||||||||||   | ||||||
seq2  CACATACCTTGGTCATCCTTGTTTTCTAA  879