BAC Information

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BAC

Clone NameB6Ng01-239N23
Chromosome14 (Build37)
Map Location 11,973,374 - 11,974,318
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100041974
Downstream geneLOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, Ptprg, LOC100042441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239N23.bB6Ng01-239N23.g
ACCGA050184GA050185
length9541,181
definitionB6Ng01-239N23.b B6Ng01-239N23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtgtgaaactgccatgaccttgtcaatagctgtgacattaata
gatgtgacgttaatagctgacccataagtttaaaacatactgttgctctg
caaacaaacaaacaaacaaacaaaaaacaaaaacaaacacaagggcagat
agagtgagggactaggccaaagggttacttagtcaccctatacaaaccaa
ccagtgcctgaaaaggttacttgctacaccaattagaataagccatctac
cctgttgcctaaatctgccccttacaagttataaaaagtgtgttctttat
ttgttctgggtctctcctctggcctgcttgctgagagggggtccccaaca
tgttggatcaataaaaatcctcttgcagtttgcagcgatcatgatctctg
tggtttttgtgagtgagggtcttttgatgagctctaacaatatctcaccg
cagtcaatgtgttcgctgtagaagtgatctcacctgcagtcttgacactt
gtagggaatccttgctcatgttccgatgtctgtttttctggtctagtcat
aaatgtccatgtgcacagaaagctaagattactcatgttgccttgttact
ggcctttgtgtgatcagcacccaggtccatgcctagaacctggcaggtgg
cgattccctgagctgctttgcacccccaccatctgcatgttgttatagct
ttctttgggttctttaattcttaatggaattaaggagaataacattgtgg
tgtgtgtgtgtgtgtgtgtgtgtatgtacctacttattgacttaaacatt
tggaagtgaaatttccttttctgttcctcttcctacaacccaagtctaat
gttcctcatctcctaagggagacccctaaaattggttcccttttctttta
attgcatctcagtttttttttttattagacaggggaaaaaagatctaaca
ttat

gaattctcacctgaggaataccgaattgttgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaagcaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaacaactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccagtaagaaggacacatgctccactat
gttcatagcagcctcatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggccctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgatatgtacctactgataagtggatattagcccagaaac
ttagtatagcgagatataaggtacaatttgcaaaacatatgaaactgaag
aagaacgaagaccaaagtatggacactttgccccttcttagaattggaaa
caatcacccatggaaggagttacagagacaaagtttggagctgagacaaa
aggatggaccatctagagactgccatatccagggatccattccataatta
gcctccaaacgatgacaccattgcatacactagcaagagtttattgcaag
gaccgtgatatagctgtctcttgtgagactaggccggggcctagcaaaca
cagaaagtggatgatcacagtcagctattggatggatcacagggccccca
atggagagctagagaaattaccaaggagcttaagggatcttgcaaccctt
ataggtggaacacattatgaactaaccagtaccctggagctctgactcta
gcttgcatatgtatcagagatgtcctagttcagcccatcacttgaagaga
agctcatttgaacaggccaaccttaatgccagtacaggtaatcgctaggt
ccaaaaattggcaatgggcgcgggtctatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_11973374_11974318
seq2: B6Ng01-239N23.b_46_999 (reverse)

seq1  ATAATGTCTATA-CTTTTTTCCACTGTCTATTAAAAAAAAAAACTGAGAT  49
      ||||||| || | ||||||||| ||||||| |||||||||||||||||||
seq2  ATAATGT-TAGATCTTTTTTCCCCTGTCTAATAAAAAAAAAAACTGAGAT  49

seq1  G-AAATAAAAGAAA--GGAAGCCATTTTA-GGGTCTCCC-TAAGAGATGA  94
      | || |||||||||  |||| | |||||| ||||||||| || |||||||
seq2  GCAATTAAAAGAAAAGGGAACCAATTTTAGGGGTCTCCCTTAGGAGATGA  99

seq1  -GAACA-TAGAC-TAGGTTGTAGGAAGAGGAACAGAAAA-GAAATTTCAC  140
       ||||| ||||| | |||||||||||||||||||||||| ||||||||||
seq2  GGAACATTAGACTTGGGTTGTAGGAAGAGGAACAGAAAAGGAAATTTCAC  149

seq1  TTCCAAATGTTTAAGTCAATAAGTAGGTACATACACACACACACACACAC  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATGTTTAAGTCAATAAGTAGGTACATACACACACACACACACAC  199

seq1  ACACACCACAATGTTATTCTCCTTAATTCCATTAAGAATTAAAGAACCCA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCACAATGTTATTCTCCTTAATTCCATTAAGAATTAAAGAACCCA  249

seq1  AAGAAAGCTATAACAACATGCAGATGGTGGGGGTGCAAAGCAGCTCAGGG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCTATAACAACATGCAGATGGTGGGGGTGCAAAGCAGCTCAGGG  299

seq1  AATCGCCACCTGCCAGGTTCTAGGCATGGACCTGGGTGCTGATCACACAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCCACCTGCCAGGTTCTAGGCATGGACCTGGGTGCTGATCACACAA  349

seq1  AGGCCAGTAACAAGGCAACATGAGTAATCTTAGCTTTCTGTGCACATGGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTAACAAGGCAACATGAGTAATCTTAGCTTTCTGTGCACATGGA  399

seq1  CATTTATGACTAGACCAGAAAAACAGACATCGGAACATGAGCAAGGATTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGACTAGACCAGAAAAACAGACATCGGAACATGAGCAAGGATTC  449

seq1  CCTACAAGTGTCAAGACTGCAGGTGAGATCACTTCTACAGCGAACACATT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAGTGTCAAGACTGCAGGTGAGATCACTTCTACAGCGAACACATT  499

seq1  GACTGCGGTGAGATATTGTTAGAGCTCATCAAAAGACCCTCACTCACAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCGGTGAGATATTGTTAGAGCTCATCAAAAGACCCTCACTCACAAA  549

seq1  AACCACAGAGATCATGATCGCTGCAAACTGCAAGAGGATTTTTATTGATC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGAGATCATGATCGCTGCAAACTGCAAGAGGATTTTTATTGATC  599

seq1  CAACATGTTGGGGACCCCCTCTCAGCAAGCAGGCCAGAGGAGAGACCCAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTTGGGGACCCCCTCTCAGCAAGCAGGCCAGAGGAGAGACCCAG  649

seq1  AACAAATAAAGAACACACTTTTTATAACTTGTAAGGGGCAGATTTAGGCA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAAGAACACACTTTTTATAACTTGTAAGGGGCAGATTTAGGCA  699

seq1  ACAGGGTAGATGGCTTATTCTAATTGGTGTAGCAAGTAACCTTTTCAGGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTAGATGGCTTATTCTAATTGGTGTAGCAAGTAACCTTTTCAGGC  749

seq1  ACTGGTTGGTTTGTATAGGGTGACTAAGTAACCCTTTGGCCTAGTCCCTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTGGTTTGTATAGGGTGACTAAGTAACCCTTTGGCCTAGTCCCTC  799

seq1  ACTCTATCTGCCCTTGTGTTTGTTTTTGTTTTTTGTTTGTTTGTTTGTTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATCTGCCCTTGTGTTTGTTTTTGTTTTTTGTTTGTTTGTTTGTTT  849

seq1  GTTTGCAGAGCAACAGTATGTTTTAAACTTATGGGTCAGCTATTAACGTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGAGCAACAGTATGTTTTAAACTTATGGGTCAGCTATTAACGTC  899

seq1  ACATCTATTAATGTCACAGCTATTGACAAGGTCATGGCAGTTTCACACAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATTAATGTCACAGCTATTGACAAGGTCATGGCAGTTTCACACAG  949

seq1  AATTC  945
      |||||
seq2  AATTC  954


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