BAC Information

Click to search

BAC

Clone NameB6Ng01-240B12
Chromosome18 (Build37)14 (Build37)
Map Location 26,298,628 - 26,299,13538,329,614 - 38,329,981
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
Downstream geneEG665977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240B12.bB6Ng01-240B12.g
ACCGA050350GA050351
length924492
definitionB6Ng01-240B12.b B6Ng01-240B12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,298,628 - 26,299,135)(38,329,614 - 38,329,981)
sequence
gaattctttgtttagttctgcaccatatttttaatagggttactaggttc
tttggagtctaacttctcgagttctttgtatgtattggatattagccctc
tatcagatgtaagattggtaaagatcttttcccaatttgttggtggcttt
ttattttttttaccatttttgttgttgttgttgtttttgtttttaacatt
ttttaatattttcttcatttacatttcaaatgctatcccaaaattcccaa
acccccccccaactcctcttatccacccacatccacatcttgtcccgggt
gttcccctgttctaaggcatataaagtttgcaagaccaaggggcctctct
tcccactgatggccgactaggccatcttctgataaatatgcagctagaga
cacgagctctggggagtactggttagtttatattgttgttccacctatag
ggttgcagacccctttagctccttgggtactttctctagctcctccattg
ggggccctgtgatccatccaatagctgactgtgagcatccacttctgtgt
ttgccaggcagtggcatcacgtcacaagagacagctatatcagggtcctt
tcagcaaaatcttgctagcgtatgcgatggtgtcagcgtttggaggctga
ttatgggatggataccccggatgcggcagtctctagatggtccattcttt
catctcagctccaaattttgtctctataactccttccatgggtgttttgt
tcccaattctaagaaggggcaaagtgtacacaatttggtcttcgttcttc
ttgagtttcatgtgttttgcaaattgtatcttgggtattctaagttttct
gggctaataaccacttatcagtgagtacatatcatgtgagtttcttttgt
gattgggttacctcactccagatc
atatgaagctcaagaagaaggaagaccaaagtgtgggtgcttcagtcctt
agaagggggaacaaaatgctcacaggaagaagagggtgggagggacttgg
gaggaacaaaaggaggggggtaaggggggaaggatcaggtttctgtatag
atacggttaaagtatgtttgtgtgcaaagatattggaacacggtaaactt
ttagaagacaaaatgaggcagatatatttgagatattttaaaataataat
ttttgattacaataattaataatcagaatcctaaccacattagtgctggt
caaatgttcctgtagaaatctttttaatttaatttaatttaatttaattt
tttaactttcttcactttacattttgtcactgcaccccttcaagttgccc
acccccactattccttcttttgtgctccatcttcccatcctcctatttcc
cctatccctctttcttctctgactctgtgagggccaccttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_26298628_26299135
seq2: B6Ng01-240B12.b_210_707

seq1  TTTTTTTTGTTGTTGTTGTTTTGTTTTTTATTTAACAGATATATTTTTTA  50
         ||||||||||||||||| | |||| | ||||||      ||||||||
seq2  ---TTTTTGTTGTTGTTGTTGT-TTTTGTTTTTAAC------ATTTTTTA  40

seq1  ATTAGGTGTTTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCC  100
      |     | ||||| ||||||||||||| ||||||||||||||| |  |||
seq2  A-----TATTTTCTTCATTTACATTTCAAATGCTATCCCAAAATT--CCC  83

seq1  ATAGCCTCTCCCCCAAACCCC---TACCCACCCACTCCCCCTTTTTGGCC  147
      | | ||   ||||| ||| ||   || ||||||||  || | | ||| ||
seq2  AAACCC---CCCCCCAACTCCTCTTATCCACCCACATCCACATCTTGTCC  130

seq1  CTGGCGTTCCCCTGTACTGGGGCATATAAAGCTTGCAAGTCCAATGGGCC  197
      | || |||||||||| ||  ||||||||||| ||||||| |||| |||||
seq2  CGGGTGTTCCCCTGTTCTAAGGCATATAAAGTTTGCAAGACCAAGGGGCC  180

seq1  TCTCTTTCCAGTGATGGCCGACTAGGCCATTTTTTGATACATATGCAGCT  247
      |||||| ||| ||||||||||||||||||| || ||||| ||||||||||
seq2  TCTCTTCCCACTGATGGCCGACTAGGCCATCTTCTGATAAATATGCAGCT  230

seq1  AGAGTCAAGAGCTCCTGG--TTACTGGTTAGTTCATAATGTTGTTCCACC  295
      |||| || ||||||  ||   |||||||||||| ||| ||||||||||||
seq2  AGAGACACGAGCTCTGGGGAGTACTGGTTAGTTTATATTGTTGTTCCACC  280

seq1  TATAGGGTTGCAGATCCCTTTAGTTCCTTCGGTACTTTCTCTAGCTCCTC  345
      |||||||||||||| |||||||| ||||| ||||||||||||||||||||
seq2  TATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTC  330

seq1  CATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGAATCCATTTA  395
      |||||||||||||||||||||||||||||||||||||||| ||||| || 
seq2  CATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTC  380

seq1  TGTGTTTGCTAGGC-CCAGCATCGTCTCACAAGAGACAGCTTTATCCGGG  444
      ||||||||| ||||    |||||   ||||||||||||||| |||| |||
seq2  TGTGTTTGCCAGGCAGTGGCATCACGTCACAAGAGACAGCTATATCAGGG  430

seq1  TCCTTTCAGCAAAATCTT----GCATATGCAATGATGTCAGCGTTTGGAG  490
      ||||||||||||||||||    || ||||| ||| |||||||||||||||
seq2  TCCTTTCAGCAAAATCTTGCTAGCGTATGCGATGGTGTCAGCGTTTGGAG  480

seq1  GCTGATTATGGGATGGAT  508
      ||||||||||||||||||
seq2  GCTGATTATGGGATGGAT  498

seq1: chr14_38329614_38329981
seq2: B6Ng01-240B12.g_199_564

seq1  GGGAAGG---AGGTTTCTGAAAATACTGTATAGATACAGTTAAAGTATGT  47
      |||||||   ||||||         |||||||||||| ||||||||||||
seq2  GGGAAGGATCAGGTTT---------CTGTATAGATACGGTTAAAGTATGT  41

seq1  TTGTGTACAAAGATATTGGAACACGGTAAACTTTTATAAGACAAAATGAG  97
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGTGTGCAAAGATATTGGAACACGGTAAACTTTTAGAAGACAAAATGAG  91

seq1  GCAGATATATTTGAGATATTTTGAAATAATAATTTTTGATTACAATAATT  147
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCAGATATATTTGAGATATTTTAAAATAATAATTTTTGATTACAATAATT  141

seq1  AATAATCAGAATCCTAACCACATTAGTGCTGGTCAAATGTTCCTGTAGAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCAGAATCCTAACCACATTAGTGCTGGTCAAATGTTCCTGTAGAA  191

seq1  ATCTTTTTAATTTAATTTAATTTAATTTAATTTTTTAAC-TTCTTCACTT  246
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCTTTTTAATTTAATTTAATTTAATTTAATTTTTTAACTTTCTTCACTT  241

seq1  TACATTTTGTCACTGCACCCCTTCAAGTTGCCCACCCCCAC-ATTCCTTC  295
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACATTTTGTCACTGCACCCCTTCAAGTTGCCCACCCCCACTATTCCTTC  291

seq1  TGCCATCCTCCATCTTCCCATCCTCCTATTTCCCCTATCC--CCTTCTTC  343
      |    | |||||||||||||||||||||||||||||||||  | ||||||
seq2  TTTTGTGCTCCATCTTCCCATCCTCCTATTTCCCCTATCCCTCTTTCTTC  341

seq1  TCTGAGCCTGTGAGGGCCACCTTGG  368
      |||||  ||||||||||||||||||
seq2  TCTGACTCTGTGAGGGCCACCTTGG  366