BAC Information

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BAC

Clone NameB6Ng01-240I09
Chromosome14 (Build37)
Map Location 16,362,830 - 16,525,000
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667152, LOC100042147, Slc4a7, Nek10, Lrrc3b
Downstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240I09.bB6Ng01-240I09.g
ACCGA050671GA050672
length1,1831,101
definitionB6Ng01-240I09.b B6Ng01-240I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,362,830 - 16,364,003)(16,523,896 - 16,525,000)
sequence
gaattccaggctcttcctttatcactgtgacagtaggaggccaatactgt
tgattttaggatgacactctgtgagtcaaaaaccaatcacttatcccaca
catcacattttcagtgggcttaattatgcttaatcaataacaatgacttc
tggaggcctggcctccctcttatgccctgtttctctccccggagtttgtc
tccttaatcagctcatgttttacctcagcgacagtcaaagtcttgttgga
ttctttcttagtggttagagaggaagggctgtttggccattcttcttatt
gacatccagatggaataaactggactgtaatgattatcaagtaaaattca
ggtgctgccagtttatgggacatgccttgaacatagcccttcaacctgta
gtgtgatatacctttcctctgacacaattcatatggctgcatctttgatt
atgttggatcttcttccacagccttttagttactggaaacctctactcat
cttggtccccaattcagtgttgtgtcccaaattccctctctgttctttcc
tctactccaaaaacaacaacacatatctgttagctatagtcttttcctct
gcacctaaatacagctgggctcctgttctgatcatattacaatctgcatg
ttagtgtatctttctctaactaaattttttaggccagagacctttttttt
tcctttagacttatgtcttcactagtagagtattagatgcaaagctgttt
taaaattatatttgctcttggttaaattaccactcacattactttcttcc
ttatcttaaactgtaattgcattacagatccatgctaaaggtgttcaatt
ttacattaaaattgatatatgccagatggctcacgaagattttattttaa
ctctcgatgagggtgttggtggttttggtaatggtgatacacaacaagat
ttcagaaagattatcaaagcataacaattacaactcttcaaacatcatca
tcttgcagggactattcatcagaccacagtcattagcagaaaatcacatt
cactccacactctctctcaataggaaagaatgcctttcttggtggggtaa
tgaaccagagctggacacaggtagtcgtgtcacgtctcacctccgttccg
ggctattcaaatataaattcctaaatcagctta

gaattccatatacagctaacaaagtaaaacaaagtcatgaatataggaat
gaagttgacaggtagtgggggttgatagggtttggacagagtaaaaacag
gcaggagacagagtaataaggatgcattacatacatggatgaaattgtca
atgagaaaacttaataaacttacaaattgggcaaagaatatacacatttg
gctatcaggtatatgaaatgttcaacatcattaaagatacagaaatgcaa
gtataaactgcaatgaggtatcactgtaatttagtgtgaatgacactatc
acaaacagaaacactaggatgccagccagtgttgacattttggaaaacaa
tgtgcagagttcacaagagagtaagatgaaaattaccatatgatttgaca
atccagatacagagtttacatagccaaaagaaagaaactaacactcccat
gtctactacagcaatattcataaaaggaaagaggtaaatttctctctgtc
tgtccctgtctctgtgtctctctcttacacacacacacacacacatacac
acacaaacacaaaaatcaatgaaaaaaaatgaattcctgtagtaacatat
ctggaacgagagactgttatgctcaatgaaaccagccagacatggaaaaa
tcaatatcacatcatctgagatgttaattgtcagcttagagaatcaagat
cacctgggaggtgggtgggtaggcatgcctgtcagcggttactttggtga
aggtaactgaggtggatagactcacactttgcattgtcctaatccctgac
tggggatctgagttgtagtgccctcttttgacttcagacacagtatgatc
agatgcctcacctctggtttgtccacctcagtagactgaaatctggaacc
cgggatctaaaataaactctctctccctcagttgcttttgtcagaatatt
tctgacgatctgatctgtggatataaacagtggatcatgagatgctgaga
gtgattggtagtcctccagaggtaggagggagcaaatgggagagcatgat
catagccaactacagggagctcggggtacttagatgtttcttatacattt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_16362830_16364003
seq2: B6Ng01-240I09.b_43_1225

seq1  GAATTCCAGGCTCTTCCTTTATCACTGTGACAGTAGGAGGCCAATACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTCTTCCTTTATCACTGTGACAGTAGGAGGCCAATACTGT  50

seq1  TGATTTTAGGATGACACTCTGTGAGTCAAAAACCAATCACTTATCCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAGGATGACACTCTGTGAGTCAAAAACCAATCACTTATCCCACA  100

seq1  CATCACATTTTCAGTGGGCTTAATTATGCTTAATCAATAACAATGACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACATTTTCAGTGGGCTTAATTATGCTTAATCAATAACAATGACTTC  150

seq1  TGGAGGCCTGGCCTCCCTCTTATGCCCTGTTTCTCTCCCCGGAGTTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCTGGCCTCCCTCTTATGCCCTGTTTCTCTCCCCGGAGTTTGTC  200

seq1  TCCTTAATCAGCTCATGTTTTACCTCAGCGACAGTCAAAGTCTTGTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAATCAGCTCATGTTTTACCTCAGCGACAGTCAAAGTCTTGTTGGA  250

seq1  TTCTTTCTTAGTGGTTAGAGAGGAAGGGCTGTTTGGCCATTCTTCTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTAGTGGTTAGAGAGGAAGGGCTGTTTGGCCATTCTTCTTATT  300

seq1  GACATCCAGATGGAATAAACTGGACTGTAATGATTATCAAGTAAAATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCAGATGGAATAAACTGGACTGTAATGATTATCAAGTAAAATTCA  350

seq1  GGTGCTGCCAGTTTATGGGACATGCCTTGAACATAGCCCTTCAACCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGCCAGTTTATGGGACATGCCTTGAACATAGCCCTTCAACCTGTA  400

seq1  GTGTGATATACCTTTCCTCTGACACAATTCATATGGCTGCATCTTTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATATACCTTTCCTCTGACACAATTCATATGGCTGCATCTTTGATT  450

seq1  ATGTTGGATCTTCTTCCACAGCCTTTTAGTTACTGGAAACCTCTACTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGATCTTCTTCCACAGCCTTTTAGTTACTGGAAACCTCTACTCAT  500

seq1  CTTGGTCCCCAATTCAGTGTTGTGTCCCAAATTCCCTCTCTGTTCTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCCCAATTCAGTGTTGTGTCCCAAATTCCCTCTCTGTTCTTTCC  550

seq1  TCTACTCCAAAAACAACAACACATATCTGTTAGCTATAGTCTTTTCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCCAAAAACAACAACACATATCTGTTAGCTATAGTCTTTTCCTCT  600

seq1  GCACCTAAATACAGCTGGGCTCCTGTTCTGATCATATTACAATCTGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTAAATACAGCTGGGCTCCTGTTCTGATCATATTACAATCTGCATG  650

seq1  TTAGTGTATCTTTCTCTAACTAAATTTTTTAGGCCAGAGACCTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTATCTTTCTCTAACTAAATTTTTTAGGCCAGAGACCTTTTTTTT  700

seq1  TCCTTTAGACTTATGTCTTCACTAGTAGAGTATTAGATGCAAAGCTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGACTTATGTCTTCACTAGTAGAGTATTAGATGCAAAGCTGTTT  750

seq1  TAAAATTATATTTGCTCTTGGTTAAATTACCACTCACATTACTTTCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATATTTGCTCTTGGTTAAATTACCACTCACATTACTTTCTTCC  800

seq1  TTATCTTAAACTGTAATTGCATTACAGATCCATGCTAAAGGTGTTCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTAAACTGTAATTGCATTACAGATCCATGCTAAAGGTGTTCAATT  850

seq1  TTACATTAAAATTGATATATGCCAGATGGCTCACGAAGATTTTATTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTAAAATTGATATATGCCAGATGGCTCACGAAGATTTTATTTTAA  900

seq1  CTCTCGATGAGGGTGTTGGTGGTTTTGGTAATGGTGATACACAACAAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCTCGATGAGGGTGTTGGTGGTTTTGGTAATGGTGATACACAACAA-GA  949

seq1  TTTCAAGAAGGATTATCAAAGCATAACAATTACAACTCTTTCAAACAATC  1000
      |||| |||| |||||||||||||||||||||||||||| ||||||| |||
seq2  TTTC-AGAAAGATTATCAAAGCATAACAATTACAACTC-TTCAAAC-ATC  996

seq1  ATCATC-TGCAGGGACTA-TCATCAGACCACAGTCATTAGCAAGAAAATC  1048
      |||||| ||||||||||| |||||||||||||||||||||| ||||||||
seq2  ATCATCTTGCAGGGACTATTCATCAGACCACAGTCATTAGC-AGAAAATC  1045

seq1  ACAT---CACCACACTCT-TC-AAATAGGAAAG-ATG-CTTTCT--GT-G  1088
      ||||   | ||||||||| ||  |||||||||| ||| ||||||  || |
seq2  ACATTCACTCCACACTCTCTCTCAATAGGAAAGAATGCCTTTCTTGGTGG  1095

seq1  GGTAATG-ACCAGAAGCTGGAC-CAGGGATGCTGTTCACG--TCAACTTC  1134
      ||||||| ||||| |||||||| |||| |  |   |||||  ||| || |
seq2  GGTAATGAACCAG-AGCTGGACACAGGTAGTCGTGTCACGTCTCACCTCC  1144

seq1  ATTTCAGGTCATCAATAATAAAAATCTCTAAATCAGCTTA  1174
       || | ||  ||  | |||| ||||  |||||||||||||
seq2  GTTCCGGGCTATTCA-AATATAAATTCCTAAATCAGCTTA  1183


seq1: chr14_16523896_16525000
seq2: B6Ng01-240I09.g_66_1166 (reverse)

seq1  CAAATGTATAGAAAACATCT-AGTACCACAGAGCTCCCTGTAGTTTGGCT  49
      ||||||||||  |||||||| |||||| | ||||||||||||| ||||| 
seq2  CAAATGTATAAGAAACATCTAAGTACC-CCGAGCTCCCTGTAG-TTGGC-  47

seq1  TATGATCATTGCTCTCCCATTTGCT-CCTCCTACCTCT-GAGAACTACCA  97
      |||||||| |||||||||||||||| |||||||||||| ||| |||||||
seq2  TATGATCA-TGCTCTCCCATTTGCTCCCTCCTACCTCTGGAGGACTACCA  96

seq1  ATCAACTCTCAGCATCTCATGATCAACTTGTTTATATTCCACAGATCAGA  147
      ||| |||||||||||||||||||| || |||||||| |||||||||||||
seq2  ATC-ACTCTCAGCATCTCATGATCCAC-TGTTTATA-TCCACAGATCAGA  143

seq1  TCGTCAGAAAATATTCTGACAAAAGCAACTGAGGGGAGAGAGAGTTTATT  197
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  TCGTCAG-AAATATTCTGACAAAAGCAACTGA-GGGAGAGAGAGTTTATT  191

seq1  TTAGATCCC-GGTTCCAGATTTCAGTCTACTGAGGTGGACAAACCAGAGG  246
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCCCGGGTTCCAGATTTCAGTCTACTGAGGTGGACAAACCAGAGG  241

seq1  TGAGGCATCTGATCATACTGTGTCTGAAGTCAAAAGAGGGCACTACAACT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATCTGATCATACTGTGTCTGAAGTCAAAAGAGGGCACTACAACT  291

seq1  CAGAT-CCCAGTCAGGGATTAGGACAATGCAAAGTGTGAGTCTATCCACC  345
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCCAGTCAGGGATTAGGACAATGCAAAGTGTGAGTCTATCCACC  341

seq1  TCAGTTACCTTCACCAAAGTAACCGCTGACAGGCATGCCTACCCACCCAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTACCTTCACCAAAGTAACCGCTGACAGGCATGCCTACCCACCCAC  391

seq1  CTCCCAGGTGATCTTGATTCTCTAAGCTGACAATTAACATCTCAGATGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGTGATCTTGATTCTCTAAGCTGACAATTAACATCTCAGATGAT  441

seq1  GTGATATTGATTTTTCCATGTCTGGCTGGTTTCATTGAGCATAACAGTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTGATTTTTCCATGTCTGGCTGGTTTCATTGAGCATAACAGTCT  491

seq1  CTCGTTCCAGATATGTTACTACAGGAATTCATTTTTTTTCATTGATTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTCCAGATATGTTACTACAGGAATTCATTTTTTTTCATTGATTTTT  541

seq1  GTGTTTGTGTGTGTATGTGTGTGTGTGTGTGTGTAAGAGAGAGACACAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTGTGTATGTGTGTGTGTGTGTGTGTAAGAGAGAGACACAGA  591

seq1  GACAGGGACAGACAGAGAGAAATTTACCTCTTTCCTTTTATGAATATTGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGACAGACAGAGAGAAATTTACCTCTTTCCTTTTATGAATATTGC  641

seq1  TGTAGTAGACATGGGAGTGTTAGTTTCTTTCTTTTGGCTATGTAAACTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAGACATGGGAGTGTTAGTTTCTTTCTTTTGGCTATGTAAACTCT  691

seq1  GTATCTGGATTGTCAAATCATATGGTAATTTTCATCTTACTCTCTTGTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGGATTGTCAAATCATATGGTAATTTTCATCTTACTCTCTTGTGA  741

seq1  ACTCTGCACATTGTTTTCCAAAATGTCAACACTGGCTGGCATCCTAGTGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCACATTGTTTTCCAAAATGTCAACACTGGCTGGCATCCTAGTGT  791

seq1  TTCTGTTTGTGATAGTGTCATTCACACTAAATTACAGTGATACCTCATTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTGTGATAGTGTCATTCACACTAAATTACAGTGATACCTCATTG  841

seq1  CAGTTTATACTTGCATTTCTGTATCTTTAATGATGTTGAACATTTCATAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATACTTGCATTTCTGTATCTTTAATGATGTTGAACATTTCATAT  891

seq1  ACCTGATAGCCAAATGTGTATATTCTTTGCCCAATTTGTAAGTTTATTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATAGCCAAATGTGTATATTCTTTGCCCAATTTGTAAGTTTATTAA  941

seq1  GTTTTCTCATTGACAATTTCATCCATGTATGTAATGCATCCTTATTACTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCATTGACAATTTCATCCATGTATGTAATGCATCCTTATTACTC  991

seq1  TGTCTCCTGCCTGTTTTTACTCTGTCCAAACCCTATCAACCCCCACTACC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTGCCTGTTTTTACTCTGTCCAAACCCTATCAACCCCCACTACC  1041

seq1  TGTCAACTTCATTCCTATATTCATGACTTTGTTTTACTTTGTTAGCTGTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACTTCATTCCTATATTCATGACTTTGTTTTACTTTGTTAGCTGTA  1091

seq1  TATGGAATTC  1105
      ||||||||||
seq2  TATGGAATTC  1101


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