BAC Information

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BAC

Clone NameB6Ng01-240N16
Chromosome14 (Build37)
Map Location 46,172,884 - 46,311,319
singlet/doubletdoublet
Overlap geneEG382884, Ddhd1
Upstream geneLOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1
Downstream geneEG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240N16.bB6Ng01-240N16.g
ACCGA050916GA050917
length961842
definitionB6Ng01-240N16.b B6Ng01-240N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,172,884 - 46,173,841)(46,310,480 - 46,311,319)
sequence
gaattccctagggctacaagccagacaaggaccaccaatagctcattaaa
ctaactcatgttcaaccattgggcactggaggtggctcgcccacactcca
tccttccacagggaaatgggcacaactcacatcttttgtttttgttcatg
gctctgcccccccagaagtggtactggggtactcttggaagagactcatg
ggtcacttgaaacaggataaaccacacatgagaacggccatgtcattcaa
aaatttgaccaaataaacggcctaaatggtcatctactttggaattccca
aacgagtggctggtaaacagcaaagccacattgagtgagttggaaaacct
tctggaattccataaaacacacatgatatatgccattactagaaactcag
aaagggttaaaaaaacagaggatcaaaactgaccctttctcttctgcttc
cctccccctcctctgcttccacgctccgcattttcttcccttcgcctccc
tctttctttctttcccttgtcgcttctcccctccgaccttctacactaag
catgctcacttgggcccacctctgatagcatgaagtctactctttctgat
cgcagagcttctgtgtcttacgggatctgtttgagtctggtccctgtcca
ggctgcacaacttcatgaagacctgtccgtctgtatatgagtgtgttctt
ataaagcttctagtaagttccagaatgtaaactggccccttcccctgggt
cggatgctctgtactctggcaaatatagcacatgtcatgcctgagagttc
tcctcaccaagtaggcaccctgccaatcaagcctactgggaggggacagc
tgggtggaatttgccctttgcgtcagatggagcatcaacagcagacatgt
gctagataaactcagaggatcccagacgctgatttcttggcctaggaaga
tcattagtttt
gaattcttttctggttctggttgcagaggatgaggctcatgggaactttc
tggataaatgaggtaggacttaaggggagtcgagtctgcttctctttgcc
ctcctctactttttcttctcctccttcttctgactaagagggatggatag
tcaaggctcttttcctggtttaggtagaaaaattctaaagagaacttctc
cagttctccatactaagttgggacgccaggagtgggggactttttatcct
ggtttagcctctcatgagagattctattttacttgaatgaataaccagcc
atttattcatgggtgagtgattgaatgttgtcagacaagtttgactcaca
gagttgtttaattgatttcttgattttgctattggtgtttctgttttgtt
tcgtctcccctcccctcccccgcccccgtaaaggaggtgcctcttctccc
ccattcctcatccaccaccctggggcactaactctgattaaaattctgct
tgattttccggataatgcatataggtggcaacctcagccggatttagctg
ttttacctgttttagccgttttagtcttttttgtttgtttgtttgcaaag
actgtcagctttcttctccgggataaaaaaccgccagtttaacccatcat
gtcctggagctacacgctcctggcccatggatccacagtacggggacctg
ggacgaccgtcagtcggggcccgcttcacctagcaaagactggctcagcc
tcatcctggatgcaacagcttcctccttcttccggtcagaaaaagggacc
tgccaaagctagggagtctggaaggggatggtggatagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_46172884_46173841
seq2: B6Ng01-240N16.b_44_1004

seq1  GAATTCACTAGGGCTACAAGCCAGACAAGGACCAGCAATAGCTCATTAAA  50
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  GAATTCCCTAGGGCTACAAGCCAGACAAGGACCACCAATAGCTCATTAAA  50

seq1  CTAACTCATGTTCAACCATTGGTCACTGGAGGTGGCTCGCCCACACTCCA  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTAACTCATGTTCAACCATTGGGCACTGGAGGTGGCTCGCCCACACTCCA  100

seq1  TCCTTCCACAGGGAAATGGGCAGAACTCACATCTTTTGTTTTTGTTCATG  150
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCTTCCACAGGGAAATGGGCACAACTCACATCTTTTGTTTTTGTTCATG  150

seq1  GCTCTGCCCCCCCAGAAGTGGTACTGGGGTACTCTTGGAAGAGACTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCCCCCCAGAAGTGGTACTGGGGTACTCTTGGAAGAGACTCATG  200

seq1  GGTCACTTGAGACAGGATGAACCACACATGAGAACGGCCATGTCATTCAA  250
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  GGTCACTTGAAACAGGATAAACCACACATGAGAACGGCCATGTCATTCAA  250

seq1  AAATTTGACCAAATAACCGTCCTAAATGTTCATCTACTTTGGAGTTCCCA  300
      |||||||||||||||| || |||||||| |||||||||||||| ||||||
seq2  AAATTTGACCAAATAAACGGCCTAAATGGTCATCTACTTTGGAATTCCCA  300

seq1  AACTAGTGGCTGGTAAACAGCAAAGCCACATTGAGTGAGTTGGAGAACCT  350
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACGAGTGGCTGGTAAACAGCAAAGCCACATTGAGTGAGTTGGAAAACCT  350

seq1  TCTGGAAGTCCATAAAACACACATGATATATGCCATTACTAGAAACTCAG  400
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATTCCATAAAACACACATGATATATGCCATTACTAGAAACTCAG  400

seq1  AAAGGGTTAGAAAGACTGAGGATCAAAACTGTTCCTTTCTCTTCTGCTTC  450
      ||||||||| ||| || ||||||||||||||  |||||||||||||||||
seq2  AAAGGGTTAAAAAAACAGAGGATCAAAACTGACCCTTTCTCTTCTGCTTC  450

seq1  CCTCCCCCTCCTCTGCTTCCTCCCTCCTCTTTTTCTTCCCTTCTCCTCCC  500
      |||||||||||||||||||| | |||| | ||||||||||||| ||||||
seq2  CCTCCCCCTCCTCTGCTTCCACGCTCCGCATTTTCTTCCCTTCGCCTCCC  500

seq1  TCTTTCTTTCTTTCCCTTGTCTCTTCTCCCCTCCGACCTTCTACACTAAG  550
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCCCTTGTCGCTTCTCCCCTCCGACCTTCTACACTAAG  550

seq1  CATGCTCACTTGGGCCCACCTCTGAGAGCATGAAGTCTAGTCTTTCTGAT  600
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  CATGCTCACTTGGGCCCACCTCTGATAGCATGAAGTCTACTCTTTCTGAT  600

seq1  CGCAGAGCTTCTGTGTCTTACGGGATCTGTTTGAGTCTGGTCCCTGTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAGCTTCTGTGTCTTACGGGATCTGTTTGAGTCTGGTCCCTGTCCA  650

seq1  GGCTGCAGAACTTCATGAAGACCTGTCCGTCTGTATTTGAGTGTGTTCTT  700
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  GGCTGCACAACTTCATGAAGACCTGTCCGTCTGTATATGAGTGTGTTCTT  700

seq1  ATAAAGCTTCTAGTAAGTTCCAGAATGTAAACTGGCCCCTTCCAGCTGGT  750
      |||||||||||||||||||||||||||||||||||||||||||    |||
seq2  ATAAAGCTTCTAGTAAGTTCCAGAATGTAAACTGGCCCCTTCCCCTGGGT  750

seq1  CGGATGCTCTGTCCTTTGGCAAATATAGCACATGCCATGCCTGAGAGTTC  800
      |||||||||||| || |||||||||||||||||| |||||||||||||||
seq2  CGGATGCTCTGTACTCTGGCAAATATAGCACATGTCATGCCTGAGAGTTC  800

seq1  TCCTCACTAGGTAGGCACCCTGCCAATCAAGCCTACTGGGAGGGGACAGC  850
      ||||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCAAGTAGGCACCCTGCCAATCAAGCCTACTGGGAGGGGACAGC  850

seq1  TGGGTGGAATTT-CCCCTTGGGCCAGATGGAGCACCAACAGCAGACATGT  899
      |||||||||||| ||| ||| | ||||||||||| |||||||||||||||
seq2  TGGGTGGAATTTGCCCTTTGCGTCAGATGGAGCATCAACAGCAGACATGT  900

seq1  GCAAGATAAACTCAGAGGATCCCACACACTGTTTTCTTGGCC-AGGAGGA  948
      || ||||||||||||||||||||| || ||| |||||||||| |||| ||
seq2  GCTAGATAAACTCAGAGGATCCCAGACGCTGATTTCTTGGCCTAGGAAGA  950

seq1  -CCTTAGTTTT  958
       | ||||||||
seq2  TCATTAGTTTT  961

seq1: chr14_46310480_46311319
seq2: B6Ng01-240N16.g_66_907 (reverse)

seq1  ATCCCTCTCCACCATCCCCTTCCAGACTCCCTAGCTTTGGCAGGT-CCTT  49
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCCCTATCCACCATCCCCTTCCAGACTCCCTAGCTTTGGCAGGTCCCTT  50

seq1  TTTCTGACCGGAAGAAGGAGG-AGCTGTTGCATCCAGGATGAGGCTGAGC  98
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTCTGACCGGAAGAAGGAGGAAGCTGTTGCATCCAGGATGAGGCTGAGC  100

seq1  CAGTCTTTGCTAGGTGAAGCGGGCCCAGACTGACGGTCGTCCCAGGACCC  148
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  CAGTCTTTGCTAGGTGAAGCGGGCCCCGACTGACGGTCGTCCCAGGTCCC  150

seq1  CGTACTGTGGAGCCCTGGGCCAGGAGTGTGTAGCTCCAGGACCTGATGGG  198
      ||||||||||| || ||||||||||| ||||||||||||||| |||||||
seq2  CGTACTGTGGATCCATGGGCCAGGAGCGTGTAGCTCCAGGACATGATGGG  200

seq1  TTTGACTGGCGGTTTCTTATCCCGGAGAAGAAAGCTGACAGTCTTTGCAA  248
      ||  ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTAAACTGGCGGTTTTTTATCCCGGAGAAGAAAGCTGACAGTCTTTGCAA  250

seq1  ACAAACAAACAAAAAAGACTAAAACGGCTAAAACAGCTAAAACAGCTAAA  298
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAAACAAACAAAAAAGACTAAAACGGCTAAAACAGGTAAAACAGCTAAA  300

seq1  ACCGGCAGAGGTTGCCACCTACTGGCAGCATCTGGAAAATCAAGCAGAAT  348
       ||||| ||||||||||||||   |||  ||| |||||||||||||||||
seq2  TCCGGCTGAGGTTGCCACCTATATGCATTATCCGGAAAATCAAGCAGAAT  350

seq1  TTTAATCAGCGTCAGCGCCCTTTGGGGGTTGGTGAGGAATGGGGGAGAAG  398
      ||||||||| || || ||||   || ||| | ||||||||||||||||||
seq2  TTTAATCAGAGTTAGTGCCCCAGGGTGGTGGATGAGGAATGGGGGAGAAG  400

seq1  AGGCAACTCCTTTCTGGGGGCGGGGGAGGGGAGGGGAGACGAAACAAAAC  448
      ||||| |||||||  |||||||||||||||||||||||||||||||||||
seq2  AGGCACCTCCTTTACGGGGGCGGGGGAGGGGAGGGGAGACGAAACAAAAC  450

seq1  AGAAACACCAATAGCAAAATCAAGAAATCAATTAAACAACTCTGTGAGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACCAATAGCAAAATCAAGAAATCAATTAAACAACTCTGTGAGTC  500

seq1  AAACTTGTCTGACAACATTCAATCACTCACCCATGAATAAATGGCTGGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGTCTGACAACATTCAATCACTCACCCATGAATAAATGGCTGGTT  550

seq1  ATTCATTCAAGTAAAATAGAATCTCTCATGAGAGGCTAAACCAGGATAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCAAGTAAAATAGAATCTCTCATGAGAGGCTAAACCAGGATAAA  600

seq1  AAGTCCCCCACTCCTGGCGTCCCAACTTAGTATGGAGAACTGGAGAAGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCCCACTCCTGGCGTCCCAACTTAGTATGGAGAACTGGAGAAGTT  650

seq1  CTCTTTAGAATTTTTCTACCTAAACCAGGAAAAGAGCCTTGACTATCCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAGAATTTTTCTACCTAAACCAGGAAAAGAGCCTTGACTATCCAT  700

seq1  CCCTCTTAGTCAGAAGAAGGAGGAGAAGAAAAAGTAGAGGAGGGCAAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTAGTCAGAAGAAGGAGGAGAAGAAAAAGTAGAGGAGGGCAAAGA  750

seq1  GAAGACGACTCGACTCCCCTTAAGTCCTACCTCATTTATCCAGAAAGTTC  798
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGACTCGACTCCCCTTAAGTCCTACCTCATTTATCCAGAAAGTTC  800

seq1  CCATGAGCCTCATCCTCTGCAACCAGAACCAGAACTGAATTC  840
      ||||||||||||||||||||||||||||||||||  ||||||
seq2  CCATGAGCCTCATCCTCTGCAACCAGAACCAGAAAAGAATTC  842