BAC Information

Click to search

BAC

Clone NameB6Ng01-241N24
Chromosome14 (Build37)
Map Location 81,639,175 - 81,784,900
singlet/doubletdoublet
Overlap geneLOC639207
Upstream geneLOC672828
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241N24.bB6Ng01-241N24.g
ACCGA051679GA051680
length1,1051,158
definitionB6Ng01-241N24.b B6Ng01-241N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,783,782 - 81,784,900)(81,639,175 - 81,640,343)
sequence
gaattctcaatagaaaaaagagtaaagttttgatgtctattttagactcc
atggagtcatttcatgactctatcctcatccagataagtagaggatattt
ctcaaatatttattgtaagacatgtcatagttccagaagataaaactcag
gttgagttttgcagaggctatttcctgactgggttttctttaaaacctga
attctcttaatatcacctatgggtctgatttctctatactaacatttcac
ttcaactggaaattcctgttgaagacctgtgctatagaaagttttgattt
ttcagttgctacctgatagtgtttccagttgaagagaagttgtgatttaa
ctcatgacctcacttttcttaaaccttggagaattcttgaattttcacac
atgtgcctctttgactttttaagatgaaaggagtttgttttgttttgttt
ttttagctttttgtacatcagaatgaaaccagaagctgaaggtggtttat
gtgtgtcaaaatccaacattgacgtggagattgactatctgaatttttag
agacaaatattatcagttgctgtgttcaaacccataagtaaaagaaacac
ttaattcatccttaccactaaacaaagaggaagctggattcattttataa
atgaagatattaatttctttaagaaatatttacaaacagctattaatttt
attctctgaaaaaaaatccatgattattaggttttcaaagccagatagag
agatatgtgtaaaggtacaccttctgatacaatagaaatattattgccat
taatatctggaacaccttggaactgtttctctctctctctgaatatgaga
aaacaaaagggcatttcatatcttgagttagacatggcattgtctcagtg
atgtatatcttatcatcagaattgtgatgagagaaggtggctgtccttcc
acgcctgcctggtttaacgtcagagagcttgttgttttatcgcactcaga
cgtgcatcatttaagtatttaaggatactcagtaatgtcaatcagtagca
ggagtcaatgcactctatatcatcagaagagagctcactgcatttcttct
cctta

gaattctgtgatttttttcatatatcactgtggtagcttgagtgaaattt
gctgtaaatgctcagatatttgaacacttggtctccagttggtggtatta
ttttataagggctagacagcatgacctagttgggaaaatgtgtcactgaa
ggcaaaatttgtgtttttggaaaccctatgccagtctcaagtacgtcatt
tcattcctgtgcttttggatccgatgtgagctctttgccatcattccagt
accatgcgtcctatctgcagcacgctctgctagatgatcaatatgaactc
taataccctacaaccatgatctgcaatatattttatctttcataagttgc
cctgatgatggtgtgccttcacagccatagaaacccaactaagaccttaa
ttgttttgcaaaatatgtaactgttgaatattttatacagtctgtgatta
atatagtttatcgtgtaaaatacaattttaattttacagattgacttcat
agaatatttttgccatgaatatcagtttgtatacctttacacagattgtc
ttcgttacggtgggtaacatttatatgtggtgtttactttatgttgttgg
tgacaacaaagacaacaacaaaaaaatcacattgtgcaatagaaagaata
acactgaaacacagtgaaaccctcccgtagtcctcctaccatactatact
ataattgctgtctagttaatcagcctaagtaccagtgatgactgtgggaa
atttaagtttatgtatggcatattgatgataatatttgagtagaataagc
tgccaaatgagaggcaaatgaaaaagaaatattgcagtccaaattgcatt
ccaaataactatttttctctccgtgcaatcaaaattgtatagtgtgcagc
tattttcataaacacccattggtgttgtagaatgaaataatacttcatgt
gattcacagcagatgctgataacaataaatctacacaacctgggataaat
aggatttagtatttcttttatgataaggaatgcatgtgttagttctgctc
ttgctacaggttgcctatcttctgttaaattgtatttatcatcaagcttg
gttcttgtacacaggtgaatgcaaatttctggggaatgctaggtttgaga
tagtgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_81783782_81784900
seq2: B6Ng01-241N24.b_49_1153 (reverse)

seq1  TAAGGAGAAGAAATGGCAGTGAGCTCTTCTCTGATGATTTATAGAGTGCA  50
      |||||||||||||| ||||||||||||  ||||||||  |||||||||||
seq2  TAAGGAGAAGAAAT-GCAGTGAGCTCTCTTCTGATGA--TATAGAGTGCA  47

seq1  TGGGCCTCCTGGCCTTAACTGGATTGACATTTACTTGAGTAATTCTTATA  100
      |  | ||||||  ||  ||| |||||||| |||| ||||| || |||| |
seq2  T-TGACTCCTG--CT--ACT-GATTGACA-TTAC-TGAGT-ATCCTTAAA  88

seq1  TACTTAAATGATGGCACCTTCTTGGAGTGGCGATAAAACAAC-AGCTCTC  149
      |||||||||||| ||| | |||  |||| ||||||||||||| |||||||
seq2  TACTTAAATGAT-GCA-CGTCT--GAGT-GCGATAAAACAACAAGCTCTC  133

seq1  TGACGTTAAACCAGGCAGGCGTGG-AGGACAGCCACCTTCTCTCATCACA  198
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGACGTTAAACCAGGCAGGCGTGGAAGGACAGCCACCTTCTCTCATCACA  183

seq1  ATTCTGATGATAAGATTATACATCACTGAGACAATGCCATGTCTAACTCA  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTCTGATGATAAGA-TATACATCACTGAGACAATGCCATGTCTAACTCA  232

seq1  AGATATGAAATGCCCTTTTGTTTTCTCATATTCAGAGAGAGAGAGAAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGAAATGCCCTTTTGTTTTCTCATATTCAGAGAGAGAGAGAAACA  282

seq1  GTTCCAAGGTGTTCCAGATATTAATGGCAATAATATTTCTATTGTATCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAGGTGTTCCAGATATTAATGGCAATAATATTTCTATTGTATCAG  332

seq1  AAGGTGTACC-TTACACATATCTCTCTATCTGGCTTTGAAAACCTAATAA  397
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTACCTTTACACATATCTCTCTATCTGGCTTTGAAAACCTAATAA  382

seq1  TCATGGATTTTTTTTCAGAGAATAAAATTAATAGCTGTTTGTAAATATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATTTTTTTTCAGAGAATAAAATTAATAGCTGTTTGTAAATATTT  432

seq1  CTTAAAGAAATTAATATCTTCATTTATAAAATGAATCCAGCTTCCTCTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAAATTAATATCTTCATTTATAAAATGAATCCAGCTTCCTCTTT  482

seq1  GTTTAGTGGTAAGGATGAATTAAGTGTTTCTTTTACTTATGGGTTTG-GC  546
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  GTTTAGTGGTAAGGATGAATTAAGTGTTTCTTTTACTTATGGGTTTGAAC  532

seq1  ACAGCCTCTGATAATATTTGTCTCTAAAAATTCAGATAGTCAATCTCCAC  596
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACTGATAATATTTGTCTCTAAAAATTCAGATAGTCAATCTCCAC  582

seq1  GTCAATGTTGGATTTTGACACACATAAACCACCTTCAGCTTCTGGTTTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGTTGGATTTTGACACACATAAACCACCTTCAGCTTCTGGTTTCA  632

seq1  TTCTGATGTACAAAAAGCTAAAAAAACAAAACAAAACAAACTCCTTTCAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGTACAAAAAGCTAAAAAAACAAAACAAAACAAACTCCTTTCAT  682

seq1  CTTAAAAAGTCAAAGAGGCACATGTGTGAAAATTCAAGAATTCTCCAAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAGTCAAAGAGGCACATGTGTGAAAATTCAAGAATTCTCCAAGG  732

seq1  TTTAAGAAAAGTGAGGTCATGAGTTAAATCACAACTTCTCTTCAACTGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAAAGTGAGGTCATGAGTTAAATCACAACTTCTCTTCAACTGGA  782

seq1  AACACTATCAGGTAGCAACTGAAAAATCAAAACTTTCTATAGCACAGGTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATCAGGTAGCAACTGAAAAATCAAAACTTTCTATAGCACAGGTC  832

seq1  TTCAACAGGAATTTCCAGTTGAAGTGAAATGTTAGTATAGAGAAATCAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAGGAATTTCCAGTTGAAGTGAAATGTTAGTATAGAGAAATCAGA  882

seq1  CCCATAGGTGATATTAAGAGAATTCAGGTTTTAAAGAAAACCCAGTCAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGGTGATATTAAGAGAATTCAGGTTTTAAAGAAAACCCAGTCAGG  932

seq1  AAATAGCCTCTGCAAAACTCAACCTGAGTTTTATCTTCTGGAACTATGAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCCTCTGCAAAACTCAACCTGAGTTTTATCTTCTGGAACTATGAC  982

seq1  ATGTCTTACAATAAATATTTGAGAAATATCCTCTACTTATCTGGATGAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTACAATAAATATTTGAGAAATATCCTCTACTTATCTGGATGAGG  1032

seq1  ATAGAGTCATGAAATGACTCCATGGAGTCTAAAATAGACATCAAAACTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTCATGAAATGACTCCATGGAGTCTAAAATAGACATCAAAACTTT  1082

seq1  ACTCTTTTTTCTATTGAGAATTC  1119
      |||||||||||||||||||||||
seq2  ACTCTTTTTTCTATTGAGAATTC  1105


seq1: chr14_81639175_81640343
seq2: B6Ng01-241N24.g_66_1223

seq1  GAATTCTGTGATTTTTTTCATATATCACTGTGGTAGCTTGAGTGAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGATTTTTTTCATATATCACTGTGGTAGCTTGAGTGAAATTT  50

seq1  GCTGTAAATGCTCAGATATTTGAACACTTGGTCTCCAGTTGGTGGTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAATGCTCAGATATTTGAACACTTGGTCTCCAGTTGGTGGTATTA  100

seq1  TTTTATAAGGGCTAGACAGCATGACCTAGTTGGGAAAATGTGTCACTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGGGCTAGACAGCATGACCTAGTTGGGAAAATGTGTCACTGAA  150

seq1  GGCAAAATTTGTGTTTTTGGAAACCCTATGCCAGTCTCAAGTACGTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAATTTGTGTTTTTGGAAACCCTATGCCAGTCTCAAGTACGTCATT  200

seq1  TCATTCCTGTGCTTTTGGATCCGATGTGAGCTCTTTGCCATCATTCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTGTGCTTTTGGATCCGATGTGAGCTCTTTGCCATCATTCCAGT  250

seq1  ACCATGCGTCCTATCTGCAGCACGCTCTGCTAGATGATCAATATGAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCGTCCTATCTGCAGCACGCTCTGCTAGATGATCAATATGAACTC  300

seq1  TAATACCCTACAACCATGATCTGCAATATATTTTATCTTTCATAAGTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCCTACAACCATGATCTGCAATATATTTTATCTTTCATAAGTTGC  350

seq1  CCTGATGATGGTGTGCCTTCACAGCCATAGAAACCCAACTAAGACCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGATGGTGTGCCTTCACAGCCATAGAAACCCAACTAAGACCTTAA  400

seq1  TTGTTTTGCAAAATATGTAACTGTTGAATATTTTATACAGTCTGTGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCAAAATATGTAACTGTTGAATATTTTATACAGTCTGTGATTA  450

seq1  ATATAGTTTATCGTGTAAAATACAATTTTAATTTTACAGATTGACTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTTATCGTGTAAAATACAATTTTAATTTTACAGATTGACTTCAT  500

seq1  AGAATATTTTTGCCATGAATATCAGTTTGTATACCTTTACACAGATTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTTTGCCATGAATATCAGTTTGTATACCTTTACACAGATTGTC  550

seq1  TTCGTTACGGTGGGTAACATTTATATGTGGTGTTTACTTTATGTTGTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTACGGTGGGTAACATTTATATGTGGTGTTTACTTTATGTTGTTGG  600

seq1  TGACAACAAAGACAACAACAAAAAAATCACATTGTGCAATAGAAAGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAAAGACAACAACAAAAAAATCACATTGTGCAATAGAAAGAATA  650

seq1  ACACTGAAACACAGTGAAACCCTCCCGTAGTCCTCCTACCATACTATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAACACAGTGAAACCCTCCCGTAGTCCTCCTACCATACTATACT  700

seq1  ATAATTGCTGTCTAGTTAATCAGCCTAAGTACCAGTGATGACTGTGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGCTGTCTAGTTAATCAGCCTAAGTACCAGTGATGACTGTGGGAA  750

seq1  ATTTAAGTTTATGTATGGCATATTGATGATAATATTTGAGTAGAATAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGTTTATGTATGGCATATTGATGATAATATTTGAGTAGAATAAGC  800

seq1  TGCCAAATGAGAGGCAAATGAAAAAGAAATATTGCAGTCCAAATTGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAATGAGAGGCAAATGAAAAAGAAATATTGCAGTCCAAATTGCATT  850

seq1  CCAAATAACTATTTTTCTCTCCGTGCAATCAAAATTGTATAGTGTGCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAACTATTTTTCTCTCCGTGCAATCAAAATTGTATAGTGTGCAGC  900

seq1  TATTTTCATAAACACCCATTGGTGTTGTAGAATGAAAATAATAACTTCAT  950
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TATTTTCATAAACACCCATTGGTGTTGTAGAATG-AAATAAT-ACTTCAT  948

seq1  GTGATTCACAGCAGATGCTGATAAC-ATAAATCTACAC-ACCTGGGATAA  998
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  GTGATTCACAGCAGATGCTGATAACAATAAATCTACACAACCTGGGATAA  998

seq1  ATAGGATTTAGTAATTTCTTTATGATAAAGGAAATGCATGGTGGTAGTTT  1048
      ||||||||||||| ||  ||||||||||  | ||||||| ||| ||| ||
seq2  ATAGGATTTAGTATTTCTTTTATGATAA--GGAATGCAT-GTGTTAG-TT  1044

seq1  CTGCTCTTGCTACAGGTTGCTTATCTTTTCTGTTATATTGTAATTTATCA  1098
      |||||||||||||||||||| ||||  |||||||| ||||| ||||||||
seq2  CTGCTCTTGCTACAGGTTGCCTATC--TTCTGTTAAATTGT-ATTTATCA  1091

seq1  TCAAGGCCTGGGTTCCTTGAGACCAGGTAGATGGGATATTCTTGGGAGAA  1148
      |||||  || |||| ||||    |||||  |||  |  ||||  || |||
seq2  TCAAG--CTTGGTT-CTTGTACACAGGTGAATGCAAATTTCT--GGGGAA  1136

seq1  TGCTAGGGTTGAG-GAGTGGGC  1169
      ||||||| |||||  |||||||
seq2  TGCTAGGTTTGAGATAGTGGGC  1158


| Home | SequenceCutter | Blast | Download |