BAC Information

Click to search

BAC

Clone NameB6Ng01-243K12
Chromosome14 (Build37)
Map Location 93,814,179 - 93,985,282
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243K12.bB6Ng01-243K12.g
ACCGA052980GA052981
length1,1761,120
definitionB6Ng01-243K12.b B6Ng01-243K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,814,179 - 93,815,367)(93,984,160 - 93,985,282)
sequence
gaattcaattccaactgtcagtttggcagcaggactcttgacccactgaa
caacctcatattgttgttcctttcaacatttatggactttatatatcttc
tgggagatgtgcatctagtcataaatattccatgagtatctttatattag
gttttggagattttggtgtcttattatatgagaaagaattcatatttccc
cataatcatgtcctccttcagaaagaaacatttgaatttagagagcaact
tatatattgaagcattctcatagcatttggcctagcaatgatcttcagga
ttaagaatggaatcctgcttttaaatcggaaaccctcacactgttgctgc
acacagaaaaccatacccatgtaatcagtaactaaatccaatattttttt
ctgaggatacaaagcttctatcttccctgtagacgttcacagtctgtttg
cttcaccaggatgaatactccaaagtactgggaagacttcttatctacct
cagcatccaaagacatgaccttatgatttataacattactgtggtttctg
atcattcttagcaggagtaaatttaggaatacagaccccaaaggtgcatt
gtaatcggttttatcctattggttgtaatttatcttcagccattatacaa
atgcacttgctctaagtaagatgtaatgccctccccctctttctgtagca
cttagggtgacctagataattatggatgtttgccaattctgccatccctg
tgtgaatggcctggtgatactaagggccaagtgcagttggccttctttag
tgtgtatgatcctaaatattgtactagatgccatgaatgcgagtatacaa
aattagaacctctgttcagtcatcacacaattagaaggaaattcagtttt
attttggcactaaaagagccacttattgggtcatttaatatggtagtgtg
attatttccattttttatagcagaaaagatctaattttttttctgtctgt
gtgaaaataaccaatataagtagtggaggacaacatctgtggaaagtcag
taaatgtactcattttcaggtaattttgacctcctgaaagttaatgatgc
acctccccaatacttggcctgtgaagtgttcttctagaagcatctagctt
ccaaatattcttcagctaagggggaa

gaattcaaggtcatgtacaggaagatgctttcctagcaaaacaaactatg
tggcacatttaagtacacgacaaataatgatggaatcacactaaaacctc
ttcacagtgtctctctgcatacatatgctgcgcaactgcctgccttgctg
ctaaaacagtcttctaacatgatcttttaaacactccgataattaaaatt
gcttggattgtctccaagagagactacctcatgccagtgttattacaatg
agattccagaatggcaattctggttcttggtggcacagatcatccttggt
aactaaagctaattaacatagcaatacaaatcttaatccaggaagcttac
aagtagaaaatccaattaaagtgatgtgacattaattacaagacaatagg
aaggttggattgagagcctagtgacacaggctgagcatcacaatggttgt
atgtgtgcatagagtgatcagtggcagaaatggctgcccatcacttccct
gcttacaatcattactcaagaggcactgtgaggattatttttaacaatat
tttaaacatgttttaactcatctaaagaacaatactatgtactaagaaca
tgatttacttctcttcacttgtttttaatttatacagatatataagtaag
agaataggatattgtaatagagaaacactatggcacagagaaaagagcag
atgcaaacccaagggtgactcacagaaaaacattttcttgggcaatttat
taatttgaagatacttcttgaaaaatgtttttttttaatataaaatttga
aaattatttttatctttattttattttattttgttatttcccttcccagt
tttctccccacaagcccccatcccctcccacccaccctgcctgtatgagg
gtcctcccctacccacccactcactcctgtctcaccaccccaagcagtct
tctaccctggggcattcagccttcacatgatcaaagggttccacctccca
tgatgctaaatatccaccgtagagcatatgtactcttggctggtgattta
gtttcctggagctttgaagtgtctggtgtgaaatggctgctattctatgg
ggctgccaaaactcaagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93814179_93815367
seq2: B6Ng01-243K12.b_45_1220

seq1  GAATTCAATTCCAACTGTCAGTTTGGCAGCAGGACTCTTGACCCACTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCAACTGTCAGTTTGGCAGCAGGACTCTTGACCCACTGAA  50

seq1  CAACCTCATATTGTTGTTCCTTTCAACATTTATGGACTTTATATATCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCATATTGTTGTTCCTTTCAACATTTATGGACTTTATATATCTTC  100

seq1  TGGGAGATGTGCATCTAGTCATAAATATTCCATGAGTATCTTTATATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATGTGCATCTAGTCATAAATATTCCATGAGTATCTTTATATTAG  150

seq1  GTTTTGGAGATTTTGGTGTCTTATTATATGAGAAAGAATTCATATTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGAGATTTTGGTGTCTTATTATATGAGAAAGAATTCATATTTCCC  200

seq1  CATAATCATGTCCTCCTTCAGAAAGAAACATTTGAATTTAGAGAGCAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCATGTCCTCCTTCAGAAAGAAACATTTGAATTTAGAGAGCAACT  250

seq1  TATATATTGAAGCATTCTCATAGCATTTGGCCTAGCAATGATCTTCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTGAAGCATTCTCATAGCATTTGGCCTAGCAATGATCTTCAGGA  300

seq1  TTAAGAATGGAATCCTGCTTTTAAATCGGAAACCCTCACACTGTTGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATGGAATCCTGCTTTTAAATCGGAAACCCTCACACTGTTGCTGC  350

seq1  ACACAGAAAACCATACCCATGTAATCAGTAACTAAATCCAATATTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAAACCATACCCATGTAATCAGTAACTAAATCCAATATTTTTTT  400

seq1  CTGAGGATACAAAGCTTCTATCTTCCCTGTAGACGTTCACAGTCTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATACAAAGCTTCTATCTTCCCTGTAGACGTTCACAGTCTGTTTG  450

seq1  CTTCACCAGGATGAATACTCCAAAGTACTGGGAAGACTTCTTATCTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCAGGATGAATACTCCAAAGTACTGGGAAGACTTCTTATCTACCT  500

seq1  CAGCATCCAAAGACATGACCTTATGATTTATAACATTACTGTGGTTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCAAAGACATGACCTTATGATTTATAACATTACTGTGGTTTCTG  550

seq1  ATCATTCTTAGCAGGAGTAAATTTAGGAATACAGACCCCAAAGGTGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTTAGCAGGAGTAAATTTAGGAATACAGACCCCAAAGGTGCATT  600

seq1  GTAATCGGTTTTATCCTATTGGTTGTAATTTATCTTCAGCCATTATACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCGGTTTTATCCTATTGGTTGTAATTTATCTTCAGCCATTATACAA  650

seq1  ATGCACTTGCTCTAAGTAAGATGTAATGCCCTCCCCCTCTTTCTGTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTGCTCTAAGTAAGATGTAATGCCCTCCCCCTCTTTCTGTAGCA  700

seq1  CTTAGGGTGACCTAGATAATTATGGATGTTTGCCAATTCTGCCATCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGTGACCTAGATAATTATGGATGTTTGCCAATTCTGCCATCCCTG  750

seq1  TGTGAATGGCCTGGTGATACTAAGGGCCAAGTGCAGTTGGCCTTCTTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGGCCTGGTGATACTAAGGGCCAAGTGCAGTTGGCCTTCTTTAG  800

seq1  TGTGTATGATCCTAAATATTGTACTAGATGCCATGAATGCGAGTATACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGATCCTAAATATTGTACTAGATGCCATGAATGCGAGTATACAA  850

seq1  AATTAGAACCTCTGTTCAGTCATCACACAATTAGAAGGAAATTCAGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAACCTCTGTTCAGTCATCACACAATTAGAAGGAAATTCAGTTTT  900

seq1  ATTTTGGCACTAAAAGAGCCACTTATT-GGTCATTTAATATGGTAGGTGT  949
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  ATTTTGGCACTAAAAGAGCCACTTATTGGGTCATTTAATATGGTA-GTGT  949

seq1  GATTATTTCCA-TTTTTATAGCAG-AAAGATCTAAATTTTTTTTTCTGTC  997
      ||||||||||| |||||||||||| ||||||||||  |||||||||||||
seq2  GATTATTTCCATTTTTTATAGCAGAAAAGATCTAA--TTTTTTTTCTGTC  997

seq1  TGTGTGAAAATAACCAATTATAAAGTAGTGGAGGACAACATCTGTGG-AA  1046
      ||||||||||||||||| ||| ||||||||||||||||||||||||| ||
seq2  TGTGTGAAAATAACCAA-TAT-AAGTAGTGGAGGACAACATCTGTGGAAA  1045

seq1  GTCAGGTTAAATGGTACTCATTTCCAGGTAAATTTTGACTTCTGAAAAGT  1096
      |||||  ||||| |||||||||| ||||| ||||||||| ||   |||||
seq2  GTCAG--TAAAT-GTACTCATTTTCAGGT-AATTTTGACCTCCTGAAAGT  1091

seq1  AAATTGATTGCACTCCCCCCAAAATACTTTG-CTGTGAAAGTGTTCCTCT  1145
       || ||| |||||  ||||   ||||||| | ||||| ||||||   |||
seq2  TAA-TGA-TGCACCTCCCC---AATACTTGGCCTGTG-AAGTGT---TCT  1132

seq1  TCTAGAAGCATCTAAGCTTTCAAATATATCTTCAG--TAGGGGGAA  1189
      ||||||||||||| ||||| ||||||| |||||||   ||||||||
seq2  TCTAGAAGCATCT-AGCTTCCAAATAT-TCTTCAGCTAAGGGGGAA  1176


seq1: chr14_93984160_93985282
seq2: B6Ng01-243K12.g_64_1183 (reverse)

seq1  ACAC-TGAGTTTTTGCAGCCCCATAGGAATAGCAGCAATATCAACCAACC  49
      |||| |||||||| ||||||||||| |||||||||| || |||    |||
seq2  ACACTTGAGTTTTGGCAGCCCCATA-GAATAGCAGCCATTTCA---CACC  46

seq1  AGACACCTCAAAGCTCCCAGGAACTAAATCACCAACCAAAGAGTACATAT  99
      |||||| ||||||||||  | ||||||||||||| || ||||||||||||
seq2  AGACACTTCAAAGCTCCAGGAAACTAAATCACCAGCC-AAGAGTACATAT  95

seq1  GGCTCTAC-GTGGATATTTAGCATCAATGGGAGGTGGAACCC-TTGATCA  147
       ||||||| |||||||||||||||| |||||||||||||||| |||||||
seq2  -GCTCTACGGTGGATATTTAGCATC-ATGGGAGGTGGAACCCTTTGATCA  143

seq1  TGTGAAGGCTGGATGCCCCAGGGTAGAAGACTGCTTGGGGTGGTGAGACA  197
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGCTGAATGCCCCAGGGTAGAAGACTGCTTGGGGTGGTGAGACA  193

seq1  GGAGTGAGTGGGTGGGTAGGGGAGGACCCTCATACAGGCAGGGTGGGTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGTGGGTGGGTAGGGGAGGACCCTCATACAGGCAGGGTGGGTGG  243

seq1  GAGGGGATGGGGGCTTGTGGGGAGAAAACTGGGAAGGGAAATAACAAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGATGGGGGCTTGTGGGGAGAAAACTGGGAAGGGAAATAACAAAAT  293

seq1  AAAATAAAATAAAGATAAAAATAATTTTCAAATTTTATATT-AAAAAAAA  346
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAATAAAATAAAGATAAAAATAATTTTCAAATTTTATATTAAAAAAAAA  343

seq1  CATTTTTCAAGAAGTATCTTCAAATTAATAAATTGCCCAAGAAAATGTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCAAGAAGTATCTTCAAATTAATAAATTGCCCAAGAAAATGTTT  393

seq1  TTCTGTGAGTCACCCTTGGGTTTGCATCTGCTCTTTTCTCTGTGCCATAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGTCACCCTTGGGTTTGCATCTGCTCTTTTCTCTGTGCCATAG  443

seq1  TGTTTCTCTATTACAATATCCTATTCTCTTACTTATATATCTGTATAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTATTACAATATCCTATTCTCTTACTTATATATCTGTATAAAT  493

seq1  TAAAAACAAGTGAAGAGAAGTAAATCATGTTCTTAGTACATAGTATTGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAGTGAAGAGAAGTAAATCATGTTCTTAGTACATAGTATTGTT  543

seq1  CTTTAGATGAGTTAAAACATGTTTAAAATATTGTTAAAAATAATCCTCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGATGAGTTAAAACATGTTTAAAATATTGTTAAAAATAATCCTCAC  593

seq1  AGTGCCTCTTGAGTAATGATTGTAAGCAGGGAAGTGATGGGCAGCCATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTCTTGAGTAATGATTGTAAGCAGGGAAGTGATGGGCAGCCATTT  643

seq1  CTGCCACTGATCACTCTATGCACACATACAACCATTGTGATGCTCAGCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACTGATCACTCTATGCACACATACAACCATTGTGATGCTCAGCCT  693

seq1  GTGTCACTAGGCTCTCAATCCAACCTTCCTATTGTCTTGTAATTAATGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACTAGGCTCTCAATCCAACCTTCCTATTGTCTTGTAATTAATGTC  743

seq1  ACATCACTTTAATTGGATTTTCTACTTGTAAGCTTCCTGGATTAAGATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACTTTAATTGGATTTTCTACTTGTAAGCTTCCTGGATTAAGATTT  793

seq1  GTATTGCTATGTTAATTAGCTTTAGTTACCAAGGATGATCTGTGCCACCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCTATGTTAATTAGCTTTAGTTACCAAGGATGATCTGTGCCACCA  843

seq1  AGAACCAGAATTGCCATTCTGGAATCTCATTGTAATAACACTGGCATGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGAATTGCCATTCTGGAATCTCATTGTAATAACACTGGCATGAG  893

seq1  GTAGTCTCTCTTGGAGACAATCCAAGCAATTTTAATTATCGGAGTGTTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTCTCTTGGAGACAATCCAAGCAATTTTAATTATCGGAGTGTTTA  943

seq1  AAAGATCATGTTAGAAGACTGTTTTAGCAGCAAGGCAGGCAGTTGCGCAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCATGTTAGAAGACTGTTTTAGCAGCAAGGCAGGCAGTTGCGCAG  993

seq1  CATATGTATGCAGAGAGACACTGTGAAGAGGTTTTAGTGTGATTCCATCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATGCAGAGAGACACTGTGAAGAGGTTTTAGTGTGATTCCATCA  1043

seq1  TTATTTGTCGTGTACTTAAATGTGCCACATAGTTTGTTTTGCTAGGAAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTCGTGTACTTAAATGTGCCACATAGTTTGTTTTGCTAGGAAAG  1093

seq1  CATCTTCCTGTACATGACCTTGAATTC  1123
      |||||||||||||||||||||||||||
seq2  CATCTTCCTGTACATGACCTTGAATTC  1120


| Home | SequenceCutter | Blast | Download |