BAC Information

Click to search

BAC

Clone NameB6Ng01-245D13
Chromosome14 (Build37)
Map Location 12,975,341 - 12,976,365
singlet/doubletsinglet
Overlap genePtprg
Upstream geneFhit, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, LOC100042441
Downstream gene3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245D13.bB6Ng01-245D13.g
ACCGA054162GA054163
length1,1561,032
definitionB6Ng01-245D13.b B6Ng01-245D13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaatagctgagtagtactccattgtgtaaatgtacc
acattttctgtatccattcctctgttgagggacatctaggttctttccag
cttctgactattataaattagacttctataaaggtagtgaaacatatgtc
cttattacatattggagcatcttctgggtatatgcccaggagaggtactt
tgggatcctccggtagtactatgtccaattttctgaggaaccaccaaact
gatttccagagtggttgtaccagcttgcaatcccaccaacaatggaggag
tgttcctctttctccacatgctcgccagcatctactgtcacctgagtttt
tgatcttagccattctgactgatgtaagatggaatctcagggttgttttg
atttgcatttccctgataactaagattgttgaacatttcttttttttttt
ttcttagcgacttcatattttttttattttattagatattttctttattt
acatttcaaatgctatcccgaaagttccctatacctccccccaccccctg
ccctgctcactcccacttcttggccctggcgttcccttgtactggggcat
ataaagtttgcaagacctaggggcctctcttcccaatgatagcagacttg
gccatcttctgctacatatgcagctagagacaagtgctctgggattactg
gttagttcatattgttgttccacctatagggttgcagaccccttcaactc
cttgggtcctttctctagcttctccattgggggccctgtgatccatccta
tagatgactatgagagcatccacttctgtatttgccaggcactggcatag
cctcatgagacagctatatcagggtctcccttcagcaaaatcttgctggc
atatgcaatagtgtctgggtttggtggctgattatgggatggatccccgg
gtggggtagtctctggatggtccatccttcatcttagcttcaaactttgt
ctctgtaattccttcaatgggtatttgtcctattctaagagatgagtatc
acacatgtctctctctgacatttcttagtactctcagcatcagatcctca
gttaagattttgatagccttatccattcatagctattggttctcggagtc
taaaac
gaattcactccatgccagtgtctctttatctctgcatatttaattatttt
ccacttagaacaagaaacagaagaagcgcctagatggtttctgctgatta
atgtgagctcaactcagggagagacccctgatggacttccactgagaaag
agaaaggttcaaacacaccgtaaccttgggtgcctttcaatgcagccttc
tctcctttcatgaaggcctctgctccctaatgtgacccagataacaatgt
ctagtgggggaattgaaaatataaatggaaatgaagtaaaggaatcctca
tctaaaggaatatgaaaagtattattctataactgattgaatgggccctg
aggactttctattgggagagaaaaaagtggtaagtcattaagaggcgcac
tcagagccgaaacatttttcatgtgcatatacaattacaggcttcattat
tccggggcctcctttgattaacaataaagcatcgaggctttcaaacccaa
atgtgtcacttggagtttctgtgtaaagtcttaaagcctagtgcttgtgg
gaggtttacgatgataagggaagaagaatgcttctacatgtactactcaa
agggctgggctgagggtctgatgatagatacttacatatattttaaacag
aaatgttggcctggggtctgtgtggtcaccaaaaggtagagactgagggc
agatatgtcatggcatctacaacagctcaggactctagccctggcccctg
gagtctagcagcaatgtttactgtcatgtgagacaaggggtggtggggac
tgtggacagcagcaggcatagttgtggcaggaaatatgaggaggtagcag
cagaggtgaggtacgtgtaagagataacacacagtgttccctagctgtgt
gaccttccattacattagatcttacataacatatagtactataacaacct
tcatcaaaagaaaggggcttgtttgcaatgaaattgaaaggagaaaaatc
ttgttgtgttatggcgttgcatgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12975341_12976365
seq2: B6Ng01-245D13.g_66_1097 (reverse)

seq1  CCCCCCCCCCATGC-ACG-CAT-ACACA--CAGATTTTTCT-CTTTCAA-  43
      |||||||||||||| ||| ||| |||||   |||||||||| ||||||| 
seq2  CCCCCCCCCCATGCAACGCCATAACACAACAAGATTTTTCTCCTTTCAAT  50

seq1  TTCATTGCAAACAAGCCCCTTTCTTTTGATG-AGGTTGTTATAGTACTAT  92
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCATTGCAAACAAGCCCCTTTCTTTTGATGAAGGTTGTTATAGTACTAT  100

seq1  ATGTTATGTAAGATCTAATGTAATGGAAGGTCACACAGCTAGGGAACACT  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGTAAGATCTAATGTAATGGAAGGTCACACAGCTAGGGAACACT  150

seq1  GTGTGTTATCTCTTACACGTACCTCACCTCTGCTGCTACCTCCTCATATT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTATCTCTTACACGTACCTCACCTCTGCTGCTACCTCCTCATATT  200

seq1  TCCTGCCACAACTATGCCTGCTGCTGTCCACAGTCCCCACCACCCCTTGT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCACAACTATGCCTGCTGCTGTCCACAGTCCCCACCACCCCTTGT  250

seq1  CTCACATGACAGTAAACATTGCCTGCTAGACTCCAGGGGCCAGGGCTAGA  292
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCACATGACAGTAAACATTG-CTGCTAGACTCCAGGGGCCAGGGCTAGA  299

seq1  GTCCTGAGCTGTTGTAGATGCCATGACATATCTGCCCTCAGTCTCTACCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGCTGTTGTAGATGCCATGACATATCTGCCCTCAGTCTCTACCT  349

seq1  TTTGGTGACCACACAGACCCCAGGCCAACATTTCTGTTTAAAATATATGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGACCACACAGACCCCAGGCCAACATTTCTGTTTAAAATATATGT  399

seq1  AAGTATCTATCATCAGACCCTCAGCCCAGCCCTTTGAGTAGTACATGTAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTATCATCAGACCCTCAGCCCAGCCCTTTGAGTAGTACATGTAG  449

seq1  AAGCATTCTTCTTCCCTTATCATCGTAAACCTCCCACAAGCACTAGGCTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCTTCTTCCCTTATCATCGTAAACCTCCCACAAGCACTAGGCTT  499

seq1  TAAGACTTTACACAGAAACTCCAAGTGACACATTTGGGTTTGAAAGCCTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTTACACAGAAACTCCAAGTGACACATTTGGGTTTGAAAGCCTC  549

seq1  GATGCTTTATTGTTAATCAAAGGAGGCCCCGGAATAATGAAGCCTGTAAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTATTGTTAATCAAAGGAGGCCCCGGAATAATGAAGCCTGTAAT  599

seq1  TGTATATGCACATGAAAAATGTTTCGGCTCTGAGTGCGCCTCTTAATGAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGCACATGAAAAATGTTTCGGCTCTGAGTGCGCCTCTTAATGAC  649

seq1  TTACCACTTTTTTCTCTCCCAATAGAAAGTCCTCAGGGCCCATTCAATCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACTTTTTTCTCTCCCAATAGAAAGTCCTCAGGGCCCATTCAATCA  699

seq1  GTTATAGAATAATACTTTTCATATTCCTTTAGATGAGGATTCCTTTACTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGAATAATACTTTTCATATTCCTTTAGATGAGGATTCCTTTACTT  749

seq1  CATTTCCATTTATATTTTCAATTCCCCCACTAGACATTGTTATCTGGGTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCATTTATATTTTCAATTCCCCCACTAGACATTGTTATCTGGGTC  799

seq1  ACATTAGGGAGCAGAGGCCTTCATGAAAGGAGAGAAGGCTGCATTGAAAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGGAGCAGAGGCCTTCATGAAAGGAGAGAAGGCTGCATTGAAAG  849

seq1  GCACCCAAGGTTACGGTGTGTTTGAACCTTTCTCTTTCTCAGTGGAAGTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAAGGTTACGGTGTGTTTGAACCTTTCTCTTTCTCAGTGGAAGTC  899

seq1  CATCAGGGGTCTCTCCCTGAGTTGAGCTCACATTAATCAGCAGAAACCAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGGGTCTCTCCCTGAGTTGAGCTCACATTAATCAGCAGAAACCAT  949

seq1  CTAGGCGCTTCTTCTGTTTCTTGTTCTAAGTGGAAAATAATTAAATATGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCGCTTCTTCTGTTTCTTGTTCTAAGTGGAAAATAATTAAATATGC  999

seq1  AGAGATAAAGAGACACTGGCATGGAGTGAATTC  1025
      |||||||||||||||||||||||||||||||||
seq2  AGAGATAAAGAGACACTGGCATGGAGTGAATTC  1032