BAC Information

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BAC

Clone NameB6Ng01-245L02
Chromosome14 (Build37)8 (Build37)
Map Location 84,829,418 - 84,829,95565,212,774 - 65,214,160
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream genePcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245L02.bB6Ng01-245L02.g
ACCGA054513GA054514
length1,020911
definitionB6Ng01-245L02.b B6Ng01-245L02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,829,418 - 84,829,955)(65,212,774 - 65,214,160)
sequence
gaattcctcttggagaattttacctttgatgagtatgaagtgttcctcct
gtcttttttgataactttgggttggaagtcgattttatccgatattaaaa
tggctactccagcttgtttcttcagtccatttgcttggaaaattgttttc
cagcctttcactctgaggtagtgtctgtctttttccctgagatgggtttc
ctgtaaacagcagaattttgggttctgtttgtgtcgccagtctgttagtc
tatgtctttttattggggaattgagtccattgatattaagagatattaag
gaaaagtaattgttgctgacttttatttttgttgttagagttggcattct
gttcttgtggctatcttctttttggtttgttgagtgattactttcttgct
tgttctagggcatgatttccgtccttgtattgcttcttttctgttattat
cctttgaagggctggattcgtggaaagatattgtgtgaatttggttttgt
cgtggaatactttggttcctccatctatggtaattgagagtttggctggg
tatagtagcctgggctggcatttgtgttctcttagtgtctgtataacatc
tgtccaggctcttctggctttcatagtctctggtgaaaagtctggtgtaa
ttctgataggccttcctttatattttacttgacctttctcccttactgct
tttaatattctatctttatttagtgcatttgttgttctgattattatgtg
tcgggaggaatttcttttctggtccagtttatttggagttctgtaggctt
cttgtatgatcatgggcatctctttctttattatttgggaagttttcttc
ttattatttttgttgaagatatttgcttggccctttaagttgaaaatctt
cattctcatcaattcctattatccgtaggtttgggtcttctcattgtgtc
ctggattaccctggatgttttgagttaggatccttttgccattttgtatt
ttcatgactgtggggtcgat

gaattcaccatgcagaaagtatgctcatctccttgaaaattttatatttt
gatgctcaattctataatgcttcactgaaataatttctcccttttctttc
ctattcttttctcttttttttgaaccataatcagcaagaaagaaacttta
cctatgtgcatcttttgtccactactatgtctttaacaacaacatatatt
ctatatatggatgtggcattgttaatgaagaactcaggaaatcataagat
tccatcaatgaaattaggattcagaaacattgaaaagaacctgtcaggaa
acaatggaatgaacaaagctggggtgtttgaaaattaccaaagtttcatc
aaagtcatattgtagtagtcgaattcttcaagaaacaatgggagaaagaa
ttctgtggtcctaagaactgtggagatcttagaacattgtctccagaata
gtatatagtattctactgaacaaaccaaatatttgaattctatttctaac
ttgatattcacttattctgatcaatctgtttctagggtaagtgaacaaag
aaaaatggaatatacaagtatataaaaaagaaaacatcactaccctgcac
caatgtgaacagaggcagttatataggttgtgagtaatatttgttgctta
caagcttaagcacaagaaaagactcaggtttaatgtatgttcattgtttg
atactaagatatgtaatattctaaaattcttcaaagagtaaaagagaaga
aagttcttcacaagtattcatgagctaagatctatgaaaaatattatgtt
agaccaaataaagaaggtgggcatatagttgtatccatactagggagact
ggggctggaggattgtgcaatcaaatgaaatttgcctgtgttgagagagg
gggggggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84829418_84829955
seq2: B6Ng01-245L02.b_523_1066 (reverse)

seq1  ATCGACACAACAGTCAAAGAAAATACAAAAT-GCAAAAGGATCCTAACTC  49
      |||||| | |||||| | ||||||||||||| ||||||||||||||||||
seq2  ATCGACCCCACAGTC-ATGAAAATACAAAATGGCAAAAGGATCCTAACTC  49

seq1  AAAACATCCA-GGTAATCCAGGACACAATGAGAAGA-CCAAACCTACGGA  97
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  AAAACATCCAGGGTAATCCAGGACACAATGAGAAGACCCAAACCTACGGA  99

seq1  TAATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCC-AGCTAA  146
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  TAATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAAGCAAA  149

seq1  TATCTTCAAC-AAAATAAT-AGAAGAAAACTTCCCAAA-CATAAAGAAAG  193
      |||||||||| |||||||| ||||||||||||||||||  ||||||||||
seq2  TATCTTCAACAAAAATAATAAGAAGAAAACTTCCCAAATAATAAAGAAAG  199

seq1  AGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGAC  243
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAAACTGGAC  249

seq1  CAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACT  299

seq1  AAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAAAAT  349

seq1  ATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATG  399

seq1  AAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAA  449

seq1  ATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATG  493
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATG  499

seq1  GAGAAACCAAAGTATTCCACGACAAAAACAAATTCACACAATATC  538
      ||| ||||||||||||||||||||||| |||||||||||||||||
seq2  GAGGAACCAAAGTATTCCACGACAAAACCAAATTCACACAATATC  544


seq1: chr8_65212774_65214160
seq2: B6Ng01-245L02.g_67_977

seq1  GAATTCACCATGCAGAAAGTATGCTCATCTCCTTGAAAATTTTATATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATGCAGAAAGTATGCTCATCTCCTTGAAAATTTTATATTTT  50

seq1  GATGCTCAATTCTATAATGCTTCACTGAAATAATTTCTCCCTTTTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCAATTCTATAATGCTTCACTGAAATAATTTCTCCCTTTTCTTTC  100

seq1  CTATTCTTTTCTCTTTTTTTTGAACCATAATCAGCAAGAAAGAAACTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTTTTCTCTTTTTTTTGAACCATAATCAGCAAGAAAGAAACTTTA  150

seq1  CCTATGTGCATCTTTTGTCCACTACTATGTCTTTAACAACAACATATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTGCATCTTTTGTCCACTACTATGTCTTTAACAACAACATATATT  200

seq1  CTATATATGGATGTGGCATTGTTAATGAAGAACTCAGGAAATCATAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATGGATGTGGCATTGTTAATGAAGAACTCAGGAAATCATAAGAT  250

seq1  TCCATCAATGAAATTAGGATTCAGAAACATTGAAAAGAACCTGTCAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAATGAAATTAGGATTCAGAAACATTGAAAAGAACCTGTCAGGAA  300

seq1  ACAATGGAATGAACAAAGCTGGGGTGTTTGAAAATTACCAAAGTTTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAATGAACAAAGCTGGGGTGTTTGAAAATTACCAAAGTTTCATC  350

seq1  AAAGTCATATTGTAGTAGTCGAATTCTTCAAGAAACAATGGGAGAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATATTGTAGTAGTCGAATTCTTCAAGAAACAATGGGAGAAAGAA  400

seq1  TTCTGTGGTCCTAAGAACTGTGGAGATCTTAGAACATTGTCTCCAGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGTCCTAAGAACTGTGGAGATCTTAGAACATTGTCTCCAGAATA  450

seq1  GTATATAGTATTCTACTGAACAAACCAAATATTTGAATTCTATTTCTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAGTATTCTACTGAACAAACCAAATATTTGAATTCTATTTCTAAC  500

seq1  TTGATATTCACTTATTCTGATCAATCTGTTTCTAGGGTAAGTGAACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTCACTTATTCTGATCAATCTGTTTCTAGGGTAAGTGAACAAAG  550

seq1  AAAAATGGAATATACAAGTATATAAAAAAGAAAACATCACTACCCTGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGAATATACAAGTATATAAAAAAGAAAACATCACTACCCTGCAC  600

seq1  CAATGTGAACAGAGGCAGTTATATAGGTTGTGAGTAATATTTGTTGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGAACAGAGGCAGTTATATAGGTTGTGAGTAATATTTGTTGCTTA  650

seq1  CAAGCTTAAGCACAAGAAAAGACTCAGGTTTAATGTATGTTCATTGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTAAGCACAAGAAAAGACTCAGGTTTAATGTATGTTCATTGTTTG  700

seq1  ATACTAAGATATGTAATATTCTAAAATTCTTCAAAGAGTAAAAGAGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAGATATGTAATATTCTAAAATTCTTCAAAGAGTAAAAGAGAAGA  750

seq1  AAGTTCTTCACAAGTATTCATGAGCTAAGATCTATGAAAAATATTATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTCACAAGTATTCATGAGCTAAGATCTATGAAAAATATTATGTT  800

seq1  AGACCAAATAAAGAAGGTGGGCATATAGTTGTATCCATACTAGGGAGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAATAAAGAAGGTGGGCATATAGTTGTATCCATACTAGGGAGACT  850

seq1  GGGGCTGGAGGATTGTGCAATCAAATGAAATTTGCCTGTGTTGAGAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGAGGATTGTGCAATCAAATGAAATTTGCCTGTGTTGAGAGAGG  900

seq1  GGGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  950
      ||||| |||  |||                                    
seq2  GGGGG-GGA--GAA------------------------------------  911

seq1  GGAAGGAAAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAG  1000
                                                        
seq2  --------------------------------------------------  911

seq1  AGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGAGAGGGAGGGAGGGAAGG  1050
                                                        
seq2  --------------------------------------------------  911

seq1  AAAATAGGAATGATCAAAATAGAAGTAAACATATCTGTACCTAGGAGTAG  1100
                                                        
seq2  --------------------------------------------------  911

seq1  ATGGCTTTTGAAAAGTCTTGCCTAATAGAAAGGAATCAGCTGTCCAAATG  1150
                                                        
seq2  --------------------------------------------------  911

seq1  AAGCTCTAGTTCTGTTAAAGTACAGACAAATCCATGTACTTATATATTAT  1200
                                                        
seq2  --------------------------------------------------  911

seq1  ATTCTATATGTATATCATCACTGTTTATAACACATTGATTCAATGGGAAA  1250
                                                        
seq2  --------------------------------------------------  911

seq1  GCGTCTTTGAAAGGAAGCAAATTCACCCAAGAGGAGTAGACAGCAGGAAA  1300
                                                        
seq2  --------------------------------------------------  911

seq1  TAATCAAACTCAGGGTGCTAATACAGATTGTGGTCATCAAAATGGCCTCT  1350
                                                        
seq2  --------------------------------------------------  911

seq1  GGTGGCAGCATGGTCCACAGACGTCAAGATGGGAGAA  1387
                                           
seq2  -------------------------------------  911


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