BAC Information

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BAC

Clone NameB6Ng01-245L08
Chromosome14 (Build37)
Map Location 119,585,334 - 119,586,293
singlet/doubletsinglet
Overlap geneHs6st3
Upstream geneLOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2
Downstream geneLOC619601, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245L08.bB6Ng01-245L08.g
ACCGA054525GA054526
length1,056979
definitionB6Ng01-245L08.b B6Ng01-245L08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacataataaaagcaatcgacagcaaacca
gtagccaacatcaaactaaacggagagaaacttgaagcaattccactaaa
atcagggactagacaaggctgcccactttctccttacctattcaatatag
tacttgaagtcctagccagagcaattagacaacaaaaggagaacaaaggg
atacaaattggaaagaaaatatcactatttgcagattatatgatagtata
tataagtgaccctaaaaattctaccagagaactcctaaacctgataaaca
gcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcc
tttctctacacaaagaataaacaggctgagaaagaaattagggaaacgac
acccttcacaatagacacaaataatataaaataccttgttgtgactctaa
ctaaagaagtgagagatctgtataagaacttcaagtctctgaaaaaagaa
atcgaagatctcagaagatggaaagatctcccatgctcatggattggcag
gattaatatagtcaaaatggctatcctgccaaaagtaatctatagattca
atgcaatccccatcaaaattccaactcaattcttcactgagttagaaagg
gcaatttgcaaattcatctgaaataacaaaaaacctaggatagcaaaaac
tcttctcaagaataaaagaagttctggaggaatcaccatccactggactg
tgcaccgggtccccagtggaggagccagggaaaggacccaagggagctga
tggggtttgcagccccataggaggaacaacaacatgaactaaccagtacc
cccagagctcctggggactaaatcaccaacccaagagtacacatggaaag
acccatggttctagctgcatatgtaatagaagatagcccttgtcagtcat
cagtgggagcaagtcctttggttctgtgaagactcttatgcccagtgtag
gaaatgccttggcaggagcagagtgggtgggtttagtgatcaggttaggg
ggaaga
gaattccttaaacaaacagcggttccgacacctctgtagaacgtgtcatg
gtgttgagcaacttgctggccccattattctcaggctggatggatgaggg
gatactgagcttcctgttaataattggacaaaatgagatgcaagcaaaaa
agagtgtctaatactaatatcagttccagaggagtcactatggctgttgg
gtaagaaccttgttaaagacagcactaaggggatcagggaggctggtttt
ttaaagggtcaacttcgtagtgaagagaaagagacatgctggaaccttca
accaacaacagtccaaaacacccgatctgtggttgctgagaaaaattgtc
cgcgttattttcatcctcagaaaaaaatgcttgcatatctggaattgttt
aagctaaaataaattaagaagtagagtataacaagaaatggatgaataac
ataaaagagtgagcggttaccagaaaagtgccagaaaaggaagaaaatta
aaatctgtaaaaatataaagggggtgtgatattgttaaaaatggagtctg
aagttataccgagaaaagttgcaaaaaatatagttaatattgaaaagtaa
aggaatgtttaaaatgatggaactctgacaccaaaaaaggagtagataga
aataaaaggggggggggagaaatctatgattaaaatactaacagatttaa
aaatacagaaaccacacagaatcattcctggaatgtgcttgtgtgtaact
cctgggtatagcagaaaggagtgagcttacttcagaatattcatttaaaa
ctgcctacgggttattttgttttcatggaaaaaaaatatgtttttgggaa
cattgtggcttgtccctggacactctaactccatgtcattcctagttggg
cctcccttttcctcctctccattcctcccagggcccaccacccaatagag
tggtgaaaacaacccataggatgtattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_119585334_119586293
seq2: B6Ng01-245L08.g_70_1048 (reverse)

seq1  GGAATACATCCTATGGTTTG-TTTCACCACTCTATT-GGTGGTGGG-CCT  47
      |||||||||||||||| ||| ||||||||||||||| ||||||||| |||
seq2  GGAATACATCCTATGGGTTGTTTTCACCACTCTATTGGGTGGTGGGCCCT  50

seq1  GGGA-GAATGGAGAGGAG---AAAGGAGG-CCAACTA-GAATGACAT-GA  90
      |||| |||||||||||||   || ||||| ||||||| ||||||||| ||
seq2  GGGAGGAATGGAGAGGAGGAAAAGGGAGGCCCAACTAGGAATGACATGGA  100

seq1  G-TAAAGTGTCCA-GGACAAGCCAC-ATGTTCC--AAAACATA-TTTTTT  134
      | || |||||||| ||||||||||| |||||||  |||||||| ||||||
seq2  GTTAGAGTGTCCAGGGACAAGCCACAATGTTCCCAAAAACATATTTTTTT  150

seq1  TCCATGGAAAC-AAATAA-CCGTAGGCAGTTTT-AATGAATATTCTGAAG  181
      |||||| |||| |||||| |||||||||||||| ||||||||||||||||
seq2  TCCATGAAAACAAAATAACCCGTAGGCAGTTTTAAATGAATATTCTGAAG  200

seq1  TAAGCTCACTCCTTTCTGCTATACCCAGGAGTTACACACAAGCACATTCC  231
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCACTCCTTTCTGCTATACCCAGGAGTTACACACAAGCACATTCC  250

seq1  AGGAATGATTCTGTGTGGTTTCTGTATTTTTAAATCTGTTAGTATTTTAA  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGATTCTGTGTGGTTTCTGTATTTTTAAATCTGTTAGTATTTTAA  300

seq1  TCATAGATTTCTCCCCCCCCCCTTTTATTTCTATCTACTCCTTTTTTGGT  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGATTTCTCCCCCCCCCCTTTTATTTCTATCTACTCCTTTTTTGGT  350

seq1  GTCAGAGTTCCATCATTTTAAACATTCCTTTACTTTTCAATATTAACTAT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTTCCATCATTTTAAACATTCCTTTACTTTTCAATATTAACTAT  400

seq1  ATTTTTTGCAACTTTTCTCGGTATAACTTCAGACTCCATTTTTAACAATA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGCAACTTTTCTCGGTATAACTTCAGACTCCATTTTTAACAATA  450

seq1  TCACACCCCCTTTATATTTTTACAGATTTTAATTTTCTTCCTTTTCTGGC  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCCCCTTTATATTTTTACAGATTTTAATTTTCTTCCTTTTCTGGC  500

seq1  ACTTTTCTGGTAACCGCTCACTCTTTTATGTTATTCATCCATTTCTTGTT  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTGGTAACCGCTCACTCTTTTATGTTATTCATCCATTTCTTGTT  550

seq1  ATACTCTACTTCTTAATTTATTTTAGCTTAAACAATTCCAGATATGCAAG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTACTTCTTAATTTATTTTAGCTTAAACAATTCCAGATATGCAAG  600

seq1  CATTTTTTTCTGAGGATGAAAATAACGCGGACAATTTTTCTCAGCAACCA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTCTGAGGATGAAAATAACGCGGACAATTTTTCTCAGCAACCA  650

seq1  CAGATCGGGTGTTTTGGACTGTTGTTGGTTGAAGGTTCCAGCATGTCTCT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCGGGTGTTTTGGACTGTTGTTGGTTGAAGGTTCCAGCATGTCTCT  700

seq1  TTCTCTTCACTACGAAGTTGACCCTTTAAAAAACCAGCCTCCCTGATCCC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCACTACGAAGTTGACCCTTTAAAAAACCAGCCTCCCTGATCCC  750

seq1  CTTAGTGCTGTCTTTAACAAGGTTCTTACCCAACAGCCATAGTGACTCCT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGCTGTCTTTAACAAGGTTCTTACCCAACAGCCATAGTGACTCCT  800

seq1  CTGGAACTGATATTAGTATTAGACACTCTTTTTTGCTTGCATCTCATTTT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTGATATTAGTATTAGACACTCTTTTTTGCTTGCATCTCATTTT  850

seq1  GTCCAATTATTAACAGGAAGCTCAGTATCCCCTCATCCATCCAGCCTGAG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATTATTAACAGGAAGCTCAGTATCCCCTCATCCATCCAGCCTGAG  900

seq1  AATAATGGGGCCAGCAAGTTGCTCAACACCATGACACGTTCTACAGAGGT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGGGGCCAGCAAGTTGCTCAACACCATGACACGTTCTACAGAGGT  950

seq1  GTCGGAACCGCTGTTTGTTTAAGGAATTC  960
      |||||||||||||||||||||||||||||
seq2  GTCGGAACCGCTGTTTGTTTAAGGAATTC  979