BAC Information

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BAC

Clone NameB6Ng01-245M15
Chromosome14 (Build37)
Map Location 52,403,931 - 52,601,157
singlet/doubletdoublet
Overlap geneEar-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13
Upstream geneTtc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4
Downstream geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245M15.bB6Ng01-245M15.g
ACCGA054582GA054583
length9991,083
definitionB6Ng01-245M15.b B6Ng01-245M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,600,168 - 52,601,157)(52,403,931 - 52,404,593)
sequence
gaattcacacagtggctcacaactgtctgtaactgtagttctaggggatg
ttaccctcttctgacttcagcaggcaccagacataggcatagtacacaca
cacacacacacacacacacacacacacaaataaagctaagaaaaaataat
actactaatcaggagggtaagaatgtaactcagtggtagaacacttgcct
agcatgcacaaagccctgaattttatccccagtttgatagagaataatta
agtaaaaatctaagtctggtcttggcaaccccctccaatggttccaagtg
tagttggtaacttgtttacaaacctcgacaccctcttctcttcccccaac
cccacgtggtcagccactagtgaccctccagcctcagtcacttcccaggt
ctttaagcatgacttgcctctcctgtcctttagtcttgttttcataattc
tggtggttggctctcatcttttggggctgtgttaaagtgccaccatcttg
aagttcttccctcgctagcagtctgacgtggtctcttactctgaatttgt
tattcacactatttgtatctaacttagtatatatttatttttctgcttat
tctccacctcttgctgtagacccacccctatcatctgtattatctaaata
aatttcatgaagttaggaatcctatttgacttttcactgatccttcctaa
ctagtgtcggatcagcccttcaagacacaggtgcagactgtaaggagggg
aggtccccatggaacaggagtggaggcaggaacatgggagaggtagaaac
tggttgggaaatgggagtcggaggctggggtccctttgcaggtctttccc
actttcctgaatttggaccctcactatgtcattcctgttggaggttattt
ttcaaacagaacaggacagaattaaaaatgaaagggtaaacctgccgggc
aagatgtaaggttcatttgtttttataagggctggggaaggcatggctt
gaattcaaggcccatacctaaacataataaaagcaatctacagcaaacca
gtagccaacatcaaagtaactgctgagttgctagaatcaatcccactaaa
atcagggactagacaaggctgtccactttttccctacctattcagcatag
tacttgaagtcctagccagagcaattcgacaacaaaaggaggtcaagggc
atacaaattgaaaaagaagaagtcaaaatatcgctatttgcagatgatat
gatgtgtatataagtgaccctaaaaattccaccagagaactcctaaatct
gataaacagcttcagtgaagtagctgggtacaaaattaattcaaacaagt
caatggcctttctctacacaaaggataaacaggctgagaaagaaattagg
gaaacaacacccttcacaatggtcacaaataatataaaataccttcatgt
gactctaactaaggaagtgaaagatctgtatgataagaacttcaagtatc
taaagaaaagaatcaaaaagatctcagaagatggaaagatctcccatgcc
cgtggattggcaagatcaaaatagtaaaaatggctatcatgccaaaagca
atctacagattcaatgcaatccccatcaaaattccaactcaattcttcaa
cgaattagaaagggcaatttgcaaattcatctggaacaacaaaaaaaatt
aggataggaaaaactcttctcaaggataaaagaacctctggtggaatcac
catgcctgacctaaagctgtactacagagcaattgtgataaaaactgcat
ggtaatggtatagctacagacaggtagatcaattgaataggtttgaagac
ccagaaatgaacccatacacctatatggtcacttgatctttgacaaggga
gttaaaggatccagtggaccacttgagcagaccttggagattgactataa
actgtacgagtcaccagctgtcccaaacagacctagatgtctggctgaca
gttccctaggattgacaagaaactaagaagacttggggttggcaaaacat
gattcccctatattttgtgagctcaaggctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_52600168_52601157
seq2: B6Ng01-245M15.b_45_1043 (reverse)

seq1  AAGCCATGCCTTCCCCAGCCCTTATAAAA--CAATGAA-CTTACATCTTG  47
      |||||||||||||||||||||||||||||   |||||| |||||||||||
seq2  AAGCCATGCCTTCCCCAGCCCTTATAAAAACAAATGAACCTTACATCTTG  50

seq1  CCC-GCAGGTTTACCCTTTCATTTTTAATTCTGTCCTGTTCTGTTTG-AA  95
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCGGCAGGTTTACCCTTTCATTTTTAATTCTGTCCTGTTCTGTTTGAAA  100

seq1  AATAACCT-CAACAGG-ATGACATAGTGAGGGT-CAAATTCAGGAAAGTG  142
      |||||||| ||||||| |||||||||||||||| ||||||||||||||||
seq2  AATAACCTCCAACAGGAATGACATAGTGAGGGTCCAAATTCAGGAAAGTG  150

seq1  GGAAAGACCTGC-AAGGGACCCCAGCCTCCGACTCCCA-TTCCCAACCAG  190
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  GGAAAGACCTGCAAAGGGACCCCAGCCTCCGACTCCCATTTCCCAACCAG  200

seq1  TTTCTACCTCTCCCATGTTCCTGCCTCCACTCCTGTTCCATGGGGACCTC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCTCTCCCATGTTCCTGCCTCCACTCCTGTTCCATGGGGACCTC  250

seq1  CCCTCCTTACAGTCTGCACCTGTGTCTTTGAAGGGCTGATCCGACACTAG  290
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCCTCCTTACAGTCTGCACCTGTGTC-TTGAAGGGCTGATCCGACACTAG  299

seq1  TTAGGAAGGATCAGTGAAAAGTCAAATAGGATTCCTAACTTCATGAAATT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGGATCAGTGAAAAGTCAAATAGGATTCCTAACTTCATGAAATT  349

seq1  TATTTAGATAATACAGATGATAGGGGTGGGTCTACAGCAAGAGGTGGAGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGATAATACAGATGATAGGGGTGGGTCTACAGCAAGAGGTGGAGA  399

seq1  ATAAGCAGAAAAATAAATATATACTAAGTTAGATACAAATAGTGTGAATA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAGAAAAATAAATATATACTAAGTTAGATACAAATAGTGTGAATA  449

seq1  ACAAATTCAGAGTAAGAGACCACGTCAGACTGCTAGCGAGGGAAGAACTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCAGAGTAAGAGACCACGTCAGACTGCTAGCGAGGGAAGAACTT  499

seq1  CAAGATGGTGGCACTTTAACACAGCCCCAAAAGATGAGAGCCAACCACCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGTGGCACTTTAACACAGCCCCAAAAGATGAGAGCCAACCACCA  549

seq1  GAATTATGAAAACAAGACTAAAGGACAGGAGAGGCAAGTCATGCTTAAAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATGAAAACAAGACTAAAGGACAGGAGAGGCAAGTCATGCTTAAAG  599

seq1  ACCTGGGAAGTGACTGAGGCTGGAGGGTCACTAGTGGCTGACCACGTGGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAAGTGACTGAGGCTGGAGGGTCACTAGTGGCTGACCACGTGGG  649

seq1  GTTGGGGGAAGAGAAGAGGGTGTCGAGGTTTGTAAACAAGTTACCAACTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGGAAGAGAAGAGGGTGTCGAGGTTTGTAAACAAGTTACCAACTA  699

seq1  CACTTGGAACCATTGGAGGGGGTTGCCAAGACCAGACTTAGATTTTTACT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGAACCATTGGAGGGGGTTGCCAAGACCAGACTTAGATTTTTACT  749

seq1  TAATTATTCTCTATCAAACTGGGGATAAAATTCAGGGCTTTGTGCATGCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTCTCTATCAAACTGGGGATAAAATTCAGGGCTTTGTGCATGCT  799

seq1  AGGCAAGTGTTCTACCACTGAGTTACATTCTTACCCTCCTGATTAGTAGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTGTTCTACCACTGAGTTACATTCTTACCCTCCTGATTAGTAGT  849

seq1  ATTATTTTTTCTTAGCTTTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTCTTAGCTTTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTG  899

seq1  TGTGTGTACTATGCCTATGTCTGGTGCCTGCTGAAGTCAGAAGAGGGTAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTACTATGCCTATGTCTGGTGCCTGCTGAAGTCAGAAGAGGGTAA  949

seq1  CATCCCCTAGAACTACAGTTACAGACAGTTGTGAGCCACTGTGTGAATTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTAGAACTACAGTTACAGACAGTTGTGAGCCACTGTGTGAATTC  999

seq1: chr14_52403931_52404593
seq2: B6Ng01-245M15.g_488_1150

seq1  GGTCACAAATAATATAAAATACCTTCATGTGACTCTAACTAAGGAAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAAATAATATAAAATACCTTCATGTGACTCTAACTAAGGAAGTGA  50

seq1  AAGATCTGTATGATAAGAACTTCAAGTATCTAAAGAAAAGAATCAAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGTATGATAAGAACTTCAAGTATCTAAAGAAAAGAATCAAAAAG  100

seq1  ATCTCAGAAGATGGAAAGATCTCCCATGCCCGTGGATTGGCAAGATCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAAGATGGAAAGATCTCCCATGCCCGTGGATTGGCAAGATCAAA  150

seq1  ATAGTAAAAATGGCTATCATGCCAAAAGCAATCTACAGATTCAATGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAAAATGGCTATCATGCCAAAAGCAATCTACAGATTCAATGCAAT  200

seq1  CCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATTT  250

seq1  GCAAATTCATCTGGAACAACAAAAAAAATTAGGATAGGAAAAACTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTCATCTGGAACAACAAAAAAAATTAGGATAGGAAAAACTCTTCT  300

seq1  CAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGT  350

seq1  ACTACAGAGCAATTGTGATAAAAACTGCATGGTAATGGTATAGCTACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGAGCAATTGTGATAAAAACTGCATGGTAATGGTATAGCTACAGA  400

seq1  CAGGTAGATCAATTGAATAGGTTTGAAGACCCAGAAATGAACCCATACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGATCAATTGAATAGGTTTGAAGACCCAGAAATGAACCCATACAC  450

seq1  CTATATGGTCACTTGATCTTTGACAAGGGAGTTAAAGGATCCAGTGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGGTCACTTGATCTTTGACAAGGGAGTTAAAGGATCCAGTGGACC  500

seq1  ACTTGAGCAGACCTTGGAGATTGACTATAAACTGTACGAGTCACCAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGCAGACCTTGGAGATTGACTATAAACTGTACGAGTCACCAGCTG  550

seq1  TCCCAAACAAGACCTAGATGTCTGGCTGACAGTTTCCCCAAGGATTGGAC  600
      |||||||| |||||||||||||||||||||||||  ||| |||||||   
seq2  TCCCAAAC-AGACCTAGATGTCTGGCTGACAGTT--CCCTAGGATTGACA  597

seq1  AGAAACTA--GAGACTTGGGGTTGGCAAAACATTGATCCCCTATATTTGT  648
      ||||||||   ||||||||||||||||||||||   ||||||||||||  
seq2  AGAAACTAAGAAGACTTGGGGTTGGCAAAACATGATTCCCCTATATTTTG  647

seq1  GGAGCTCAA-GCTGAG  663
       |||||||| ||||||
seq2  TGAGCTCAAGGCTGAG  663