BAC Information

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BAC

Clone NameB6Ng01-246J11
Chromosome14 (Build37)3 (Build37)
Map Location 41,715,999 - 41,717,10663,141,627 - 63,141,926
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040439, LOC218945, LOC100040470, LOC382876, Sh2d4b
Downstream geneTspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246J11.bB6Ng01-246J11.g
ACCGA055168GA055169
length1,107967
definitionB6Ng01-246J11.b B6Ng01-246J11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,715,999 - 41,717,106)(63,141,627 - 63,141,926)
sequence
gaattcaatttagggaaaaaaacaaatatctaaatcctcttaagtgacta
agcgacccggataagaagctctgcagtttctgtttgttccctttgtgcgt
gactcaggtacaacagggtcacatccttctgtgtgactcagcatgtgggc
atggcataccacgtacatgaacgtcagaagacaaccgctggtgttggtcc
tccacttccaccttgagagagggtctctttgttcttctactgaacaggcc
agactagctgactcccaagcctcctgggatatccctgtctacaccttgcc
tgtctcggtagggacagcgggattgcagacattcatgcaaatgcgggtcc
ctttacccaaaaagtccctttacacacagcaccatctccccagcccatac
tgaggcaccttctgtgttttgttttgaaatctgtgtgtttatttattaaa
taaacactgtaagagcaaagcccacaggaggataccgggaaactcacacc
gcagcgttcccagcatcctacagggaaggtcatttcctaacatgtgcgtg
aagcagaaggagcagacatggaggcaggctgaccctccttgacctcacta
ccgtgatgacccatcacggaggctagaggcagtctcaagtggagcccccc
tcctcacccccacccccaatctccgacgatgaagacactggcagacagcg
aacaggaaaccagatcctgctgacctcactgagtcacttggatcacagca
accctgaaactcgcgctgcctctggactttccagtttcaggagctaaaac
cctccactcattgttcaggttgggttaatagggttttctattacctggaa
ctgcaaacataatcccctggagagcaacggccacttacttgtgtggctta
acccaggtgaacgtacctgatcaatacataaaaagaactacagaaaactg
accccccccccccaaataaagaaagaaaaaaaagactcccatttgggata
aagatccaaagacacttttctggaagatcctaactgtagttgtcctcggt
acagaaaaacatacttttcacttgcaccatttagaatagcttctaactta
tgtaaaa
gaattcaaagcatttggagaagcaggcctacaatgctataagcagaactt
gatgggcagttctggcaaggactcagaagaccagagtatcaataagtata
taaactgacgatgtgactgactgatgtatggttaagaggagggttttact
gtagatggaagggagagaacagccagaggcatctagaaagtccagagcag
agcgagaaagaagcaggctgaccgtggccagcagactggatctggtcatg
agaaagcaggagcagagagatgagagaaggagcgagatggaggtagagag
aaactgagaaaagaagacagagaaaaagagagagagatggagaacatgag
agaggggaaagcaggagacagagagagcacaaagctgaaaaagtggaggg
acctggagggtatcatcctgagtgaggtaacccaatcacaaaggaactcg
cacaatatgtactcactgataagtggatattagcccagaaacttaggata
cccaagatataagatacaacttgccaaacgcatgaaattcaagaagaacg
aagaccaaagtgtggacactttaccctttcttagaaatgggaacaaaaca
cccatggaaggagttacaaagacaaaatttggagctgtgacgaaaggatg
gaccatctagtgattgccatatgcagggatccatcccataatcagcttcc
aaatgctgacaccattacatacactagcaagattttgctgaaaggaccca
gatatagctgtctcttgtgagactatgccaaggcctagcaaacacagaag
tggatgatcacagtcagctattgaatggaccacagggcccccaatggagg
agctagagaaattacccaaggagctaatggggaactgcaaccctataggt
ggaacaataatattgtagtaaccagtaccccgggagcttcttgtctctag
cctgcattatgtatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_41715999_41717106
seq2: B6Ng01-246J11.b_46_1152

seq1  GAATTCAATTTAGGGAAAAAAACAAATATCTAAATCCTCTTAAGTGACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAGGGAAAAAAACAAATATCTAAATCCTCTTAAGTGACTA  50

seq1  AGCGACCCGGATAAGAAGCTCTGCAGTTTCTGTTTGTTCCCTTTGTGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACCCGGATAAGAAGCTCTGCAGTTTCTGTTTGTTCCCTTTGTGCGT  100

seq1  GACTCAGGTACAACAGGGTCACATCCTTCTGTGTGACTCAGCATGTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGTACAACAGGGTCACATCCTTCTGTGTGACTCAGCATGTGGGC  150

seq1  ATGGCATACCACGTACATGAACGTCAGAAGACAACCGCTGGTGTTGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATACCACGTACATGAACGTCAGAAGACAACCGCTGGTGTTGGTCC  200

seq1  TCCACTTCCACCTTGAGAGAGGGTCTCTTTGTTCTTCTACTGAACAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCCACCTTGAGAGAGGGTCTCTTTGTTCTTCTACTGAACAGGCC  250

seq1  AGACTAGCTGACTCCCAAGCCTCCTGGGATATCCCTGTCTACACCTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGCTGACTCCCAAGCCTCCTGGGATATCCCTGTCTACACCTTGCC  300

seq1  TGTCTCGGTAGGGACAGCGGGATTGCAGACATTCATGCAAATGCGGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGGTAGGGACAGCGGGATTGCAGACATTCATGCAAATGCGGGTCC  350

seq1  CTTTACCCAAAAAGTCCCTTTACACACAGCACCATCTCCCCAGCCCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCAAAAAGTCCCTTTACACACAGCACCATCTCCCCAGCCCATAC  400

seq1  TGAGGCACCTTCTGTGTTTTGTTTTGAAATCTGTGTGTTTATTTATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCACCTTCTGTGTTTTGTTTTGAAATCTGTGTGTTTATTTATTAAA  450

seq1  TAAACACTGTAAGAGCAAAGCCCACAGGAGGATACCGGGAAACTCACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTGTAAGAGCAAAGCCCACAGGAGGATACCGGGAAACTCACACC  500

seq1  GCAGCGTTCCCAGCATCCTACAGGGAAGGTCATTTCCTAACATGTGCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGTTCCCAGCATCCTACAGGGAAGGTCATTTCCTAACATGTGCGTG  550

seq1  AAGCAGAAGGAGCAGACATGGAGGCAGGCTGACCCTCCTTGACCTCACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAGGAGCAGACATGGAGGCAGGCTGACCCTCCTTGACCTCACTA  600

seq1  CCGTGATGACCCATCACGGAGGCTAGAGGCAGTCTCAAGTGGAGCCCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGATGACCCATCACGGAGGCTAGAGGCAGTCTCAAGTGGAGCCCCCC  650

seq1  TCCTCACCCCCACCCCCAATCTCCGACGATGAAGACACTGGCAGACAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCCCCACCCCCAATCTCCGACGATGAAGACACTGGCAGACAGCG  700

seq1  AACAGGAAACCAGATCCTGCTGACCTCACTGAGTCACTTGGATCACAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAACCAGATCCTGCTGACCTCACTGAGTCACTTGGATCACAGCA  750

seq1  ACCCTGAAACTCGCGCTGCCTCTGGACTTTCCAGTTTCAGGAGCTAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAAACTCGCGCTGCCTCTGGACTTTCCAGTTTCAGGAGCTAAAAC  800

seq1  CCTCCACTCATTGTTCAGGTTGGGTTAATAGGGTTTTCTATTACCTGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACTCATTGTTCAGGTTGGGTTAATAGGGTTTTCTATTACCTGGAA  850

seq1  CTGCAAACATAATCCCCTGGAGAGCAACGGCCACTTACTTGTGTGGCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAACATAATCCCCTGGAGAGCAACGGCCACTTACTTGTGTGGCTTA  900

seq1  A-CCAAGTGAACGTACCTGATCAATACATAAAAAGAACTACAGAAAACTG  949
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGTGAACGTACCTGATCAATACATAAAAAGAACTACAGAAAACTG  950

seq1  ACCCCCCCCCCCAAAATAAAAGAAAGAAAAAAAAGACTCCCATTT-GGAT  998
      |||||||||||| |||| ||||||||||||||||||||||||||| ||||
seq2  ACCCCCCCCCCCCAAAT-AAAGAAAGAAAAAAAAGACTCCCATTTGGGAT  999

seq1  AAAGATCCAAAGACAC-TTTCTGGAAGGATCCTTAACTGTAGTTGTCTTC  1047
      |||||||||||||||| ||||||||| ||||| |||||||||||||| ||
seq2  AAAGATCCAAAGACACTTTTCTGGAA-GATCC-TAACTGTAGTTGTCCTC  1047

seq1  GGGTAACAG-AAAACATACTTTTCACTTTGCACCATTTAG-ATAGCTTCT  1095
      ||   |||| |||||||||||||||| ||||||||||||| |||||||||
seq2  GG--TACAGAAAAACATACTTTTCAC-TTGCACCATTTAGAATAGCTTCT  1094

seq1  -ACTTATGTTAAAA  1108
       |||||||| ||| 
seq2  AACTTATGTAAAA-  1107

seq1: chr3_63141627_63141926
seq2: B6Ng01-246J11.g_866_1000 (reverse)

seq1  GGGGTACTGGTTAGT-TAATGTTGTTGTTCCTCCTATAGGGCTGCA-AAC  48
      ||||||||||||| |  ||| || ||||||| ||||||||| ||||   |
seq2  GGGGTACTGGTTACTACAATATTATTGTTCCACCTATAGGGTTGCAGTTC  50

seq1  GCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTTCATTGGGGACCTTGT  98
       || | ||||||||||||| |||||||||||||| |||||||| || |||
seq2  CCCATTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATTGGGGGCCCTGT  100

seq1  GTTCTATCCAATGATTTTAAACAAAATCACTGTGAATCTTAAAAATTCAA  148
      | || || ||||           |  | |||||| ||| |   | |||  
seq2  GGTCCATTCAAT-----------AGCTGACTGTG-ATCAT-CCACTTC--  135

seq1  TGTACCTGTGACCCTCATTAAATGCTAAGTAGACCAACTTCCCTGGATAT  198
                                                        
seq2  --------------------------------------------------  135

seq1  GGGTGCTTTTTCTGTTGAGGGATATACTGTAGCTACCTAGGTTGTGCTTC  248
                                                        
seq2  --------------------------------------------------  135

seq1  TGTCCACATATTTTAATAGGATAAAGTATGGGGAGCTGTGATCATCCACT  298
                                                        
seq2  --------------------------------------------------  135

seq1  TC  300
        
seq2  --  135