BAC Information

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BAC

Clone NameB6Ng01-246K20
Chromosome14 (Build37)
Map Location 102,444,755 - 102,560,595
singlet/doubletdoublet
Overlap genenone
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246K20.bB6Ng01-246K20.g
ACCGA055229GA055230
length1,199521
definitionB6Ng01-246K20.b B6Ng01-246K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,559,403 - 102,560,595)(102,444,755 - 102,445,281)
sequence
gaattcttttaaaagctcctataaaaccagatgatgtattttagtcagaa
gtcacaaagagaattaatctctatgtagaaagccatagaagatgtataaa
aacaaatcccttgctaaaaatgggtactaagcatgtaaaaaagttgaagg
atttctggcttgtaaaataaaagcaagcatttcatatttctgctgtgcca
aacaaaaattaattttaacatatactaccatctaagtaaaataccactat
aaaataggaatggaaactgtaaaaatgcatctgtcataaagagtttatgg
caatcttgaaccttacaacttcatattccaggtcttctgatgaatccaat
tggttctcttcattgcccacatctactgcattaaaagactaaagtattgc
tattagaacaatatattccattccctaccggcaagggtattatttttgta
taccttgtgtcttatttttacaatatatcataagactttatcttattcac
agagatgtggcctctttgctattgctgatatggcataaacttttgaagcc
tttttatcaccagttttatgacttcgtctacatttttcaaatagcttagc
aaagaagtgcctacagtttcacagcaattctcacagattccagaatcata
ttctctgagctaatatgatgttctgaataacaaatgcagttacataagcc
tcacacaggtctactaatatcaaaatgataactgctagatatgtttgctc
tttccaaagcacacgttagattagattggcagagctatacatgcttatgc
tttagaggaccactttgttgaaaaatagcaaaggaaggaagctgattctc
atgttggcagccatgtttgctcattaaacttgttagtggaaatggtcagg
ttcattactaaaccctcatgagaagctttctgttctgtagcctgtgctgg
ctagttttatgtcaacttgacacaagctagagttacctgaaaggaagtaa
catcaattgaagacactgtctctaataacatataccctgtaagtcatttt
ctaataaatgatcatggggaggccaagtttcattgtgggtggaactgttt
ctgagctgatgtcctggtttctagtccttaggcaagccagtaaacgcaat
cttccagttcctctgcatcagcttcctgcccttcaaggcttccagccct
actttgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcc
tctgcctcccgagtgctgggattaaagacgtgtgccaccacgcccggctg
gagtgaagcattattacctactatctcccaaatgaggtcccaaatagtct
gcatcagttctctgcatgtataatttgactaaatgtcaaaatacattttc
actattcacttccaccttgagtgtcagcttttgtgtattgagcaagtact
ttggggaatctatttaattaacattagagttattaaaggagccatagaga
agaatttagatagtcatacttgtctacaattcatatcgaaatggttttta
ggtcttggtcagagtctgataataaacacagtcatactgtgctatcagtg
tagttctccaaattagctcttgaaggtatgtctagtttagaaataaccat
tgttcaagtttttatattctcctggtctctatcttgtagtgtgtgtgtgt
gtgtgtgtgtgtgtatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_102559403_102560595
seq2: B6Ng01-246K20.b_43_1241 (reverse)

seq1  AGGGCTGGAA-CCTGGA--GGCAGG-AGCTGATGCAGAGGACATGGAAGG  46
      |||||||||| ||| ||  |||||| |||||||||||||||  |||||| 
seq2  AGGGCTGGAAGCCTTGAAGGGCAGGAAGCTGATGCAGAGGAACTGGAAGA  50

seq1  ATGCTGTTTACTGGCTTGCCT-AGGACTAGAACCCAGGACCATCAGCTCA  95
       ||| |||||||||||||||| |||||||||| |||||| ||||||||||
seq2  TTGC-GTTTACTGGCTTGCCTAAGGACTAGAAACCAGGA-CATCAGCTCA  98

seq1  GAAACAGTCCCACCCACAATG-AACTGGGCCCTCCCCAATTGATCATTAA  144
      |||||||| |||||||||||| |||| || ||||||||  |||||||| |
seq2  GAAACAGTTCCACCCACAATGAAACTTGG-CCTCCCCA--TGATCATTTA  145

seq1  TTAAGAAAATGACTTACA-GGTATATGTTA-TAGAGACAGTGTC-TCAAT  191
      || ||||||||||||||| ||||||||||| ||||||||||||| |||||
seq2  TT-AGAAAATGACTTACAGGGTATATGTTATTAGAGACAGTGTCTTCAAT  194

seq1  TGATGTACCTTCCTTTCAGGTAACTCTAGCTTGTGTCAAGTTGACATAAA  241
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTACTTCCTTTCAGGTAACTCTAGCTTGTGTCAAGTTGACATAAA  244

seq1  ACTAGCCAGCACAGGCTACAGAACAGAAAGCTTCTCATGA-GGTTTAGTA  290
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTAGCCAGCACAGGCTACAGAACAGAAAGCTTCTCATGAGGGTTTAGTA  294

seq1  ATGAACCTGACCATTTCCACTAACAAG-TTAATGAGCAAACATGGCTGCC  339
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGAACCTGACCATTTCCACTAACAAGTTTAATGAGCAAACATGGCTGCC  344

seq1  AACATGAGAATCAGCTTCCTTCCTTTGCTATTTTTCAAC-AAGTGGTCCT  388
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACATGAGAATCAGCTTCCTTCCTTTGCTATTTTTCAACAAAGTGGTCCT  394

seq1  CTAAAGCATAAGCATGTATAGCTCTGCCAATCTAATCTAACGTGTGCTTT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCATAAGCATGTATAGCTCTGCCAATCTAATCTAACGTGTGCTTT  444

seq1  GGAAAGAGCAAACATATCTAGCAGTTATCATTTTGATATTAGTAGACCTG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGCAAACATATCTAGCAGTTATCATTTTGATATTAGTAGACCTG  494

seq1  TGTGAGGCTTATGTAACTGCATTTGTTATTCAGAACATCATATTAGCTCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGCTTATGTAACTGCATTTGTTATTCAGAACATCATATTAGCTCA  544

seq1  GAGAATATGATTCTGGAATCTGTGAGAATTGCTGTGAAACTGTAGGCACT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATGATTCTGGAATCTGTGAGAATTGCTGTGAAACTGTAGGCACT  594

seq1  TCTTTGCTAAGCTATTTGAAAAATGTAGACGAAGTCATAAAACTGGTGAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTAAGCTATTTGAAAAATGTAGACGAAGTCATAAAACTGGTGAT  644

seq1  AAAAAGGCTTCAAAAGTTTATGCCATATCAGCAATAGCAAAGAGGCCACA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGCTTCAAAAGTTTATGCCATATCAGCAATAGCAAAGAGGCCACA  694

seq1  TCTCTGTGAATAAGATAAAGTCTTATGATATATTGTAAAAATAAGACACA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGAATAAGATAAAGTCTTATGATATATTGTAAAAATAAGACACA  744

seq1  AGGTATACAAAAATAATACCCTTGCCGGTAGGGAATGGAATATATTGTTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATACAAAAATAATACCCTTGCCGGTAGGGAATGGAATATATTGTTC  794

seq1  TAATAGCAATACTTTAGTCTTTTAATGCAGTAGATGTGGGCAATGAAGAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCAATACTTTAGTCTTTTAATGCAGTAGATGTGGGCAATGAAGAG  844

seq1  AACCAATTGGATTCATCAGAAGACCTGGAATATGAAGTTGTAAGGTTCAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATTGGATTCATCAGAAGACCTGGAATATGAAGTTGTAAGGTTCAA  894

seq1  GATTGCCATAAACTCTTTATGACAGATGCATTTTTACAGTTTCCATTCCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCATAAACTCTTTATGACAGATGCATTTTTACAGTTTCCATTCCT  944

seq1  ATTTTATAGTGGTATTTTACTTAGATGGTAGTATATGTTAAAATTAATTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAGTGGTATTTTACTTAGATGGTAGTATATGTTAAAATTAATTT  994

seq1  TTGTTTGGCACAGCAGAAATATGAAATGCTTGCTTTTATTTTACAAGCCA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGCACAGCAGAAATATGAAATGCTTGCTTTTATTTTACAAGCCA  1044

seq1  GAAATCCTTCAACTTTTTTACATGCTTAGTACCCATTTTTAGCAAGGGAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCTTCAACTTTTTTACATGCTTAGTACCCATTTTTAGCAAGGGAT  1094

seq1  TTGTTTTTATACATCTTCTATGGCTTTCTACATAGAGATTAATTCTCTTT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTATACATCTTCTATGGCTTTCTACATAGAGATTAATTCTCTTT  1144

seq1  GTGACTTCTGACTAAAATACATCATCTGGTTTTATAGGAGCTTTTAAAAG  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTCTGACTAAAATACATCATCTGGTTTTATAGGAGCTTTTAAAAG  1194

seq1  AATTC  1193
      |||||
seq2  AATTC  1199

seq1: chr14_102444755_102445281
seq2: B6Ng01-246K20.g_66_592

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCC  50

seq1  TCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGACGTGTGCCACCACGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGACGTGTGCCACCACGCC  100

seq1  CGGCTGGAGTGAAGCATTATTACCTACTATCTCCCAAATGAGGTCCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGGAGTGAAGCATTATTACCTACTATCTCCCAAATGAGGTCCCAAA  150

seq1  TAGTCTGCATCAGTTCTCTGCATGTATAATTTGACTAAATGTCAAAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGCATCAGTTCTCTGCATGTATAATTTGACTAAATGTCAAAATAC  200

seq1  ATTTTCACTATTCACTTCCACCTTGAGTGTCAGCTTTTGTGTATTGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACTATTCACTTCCACCTTGAGTGTCAGCTTTTGTGTATTGAGCA  250

seq1  AGTACTTTGGGGAATCTATTTAATTAACATTAGAGTTATTAAAGGAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTGGGGAATCTATTTAATTAACATTAGAGTTATTAAAGGAGCCA  300

seq1  TAGAGAAGAATTTAGATAGTCATACTTGTCTACAATTCATATCGAAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGAATTTAGATAGTCATACTTGTCTACAATTCATATCGAAATGG  350

seq1  TTTTTAGGTCTTGGTCAGAGTCTGATAATAAACACAGTCATACTGTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGGTCTTGGTCAGAGTCTGATAATAAACACAGTCATACTGTGCTA  400

seq1  TCAGTGTAGTTCTCCAAATTAGCTCTTGAAGGTATGTCTAGTTTAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTAGTTCTCCAAATTAGCTCTTGAAGGTATGTCTAGTTTAGAAAT  450

seq1  AACCATTGTTCAAGTTTTTATATTCTCCTGGTCTCTATCTTGTAGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTGTTCAAGTTTTTATATTCTCCTGGTCTCTATCTTGTAGTGTGT  500

seq1  GTGTGTGTGTGTGTGTGTGTATGTGTG  527
      |||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTATGTGTG  527