BAC Information

Click to search

BAC

Clone NameB6Ng01-246M06
Chromosome14 (Build37)
Map Location 18,303,897 - 18,305,016
singlet/doubletsinglet
Overlap genenone
Upstream geneRarb, Tpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246M06.bB6Ng01-246M06.g
ACCGA055289GA055290
length1,2181,113
definitionB6Ng01-246M06.b B6Ng01-246M06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatca
gccagataaagtgctagctaatcggtcaagaaaaaagcaaaaagcggctg
gcgaaggccagcatgctgttcagcctccgggcagtcggcttcaaggtccg
ccctatgcggagcccccgccctgcgtagtgcgtcagccctgcgcagagag
acaatgcgcagagaggcaatgcgcagactcattcattcccagagaggaac
aaaggaaaatacaacaggcatttccggtctttgaaggagccgagggtggg
cgtgtccacgctccggtagaatatgtgcagattaaagaacttgccgagtc
ggtccgtaaatacggaaccaatgctaattttaccttggtgcagttagaca
ggcttgccgacatggcactaactcctgccgactggcaaacgattgtaaaa
gccgctctccctagtatgggcaaatatatgaaatggagagctctttggca
tgaggctgcacaagcacaggcccgaacaaacgcagctgctttgattccag
agcagagagattggacttttgacttgttaacgggtcagggagcttattct
gctgatcaaacaaactaccattggggagcttatgcccaaatttcctccac
ggctattagggcctgaaaggcgctctcccgagcagttgaagccactggac
aattaacaaagatcgtccagagaccttaggagtccttctcagattttgtg
gccagagagacagaggcaggctcttgcagcctacaaggtcttattgtcca
ccctggagttgtagatcaggattataaaggggaacttcaggttctctgtt
cttgtcctcaagttgtcttttctatatcacaaggggacaaaatagctcaa
ctaataattttgccaagcctacatggctgttttttcttcctctggtattc
ctagagctgccagagggattgggttctactggaaatgattctgattactt
aataatgcctttagatgtgtcaaattttatctactcatgtagggttaacc
ctcgtgacgtcagcccattacagtctgcaaatggatgtcacgcatatttt
cctcctttgggagaaaatcaatgttttacggtgttccaatgaccaatgct
ctggcaatctaaggttttggctttctctccattttaaccgcggagtaata
aatagatgccctatttca
gaattcagttccctcttcagggacaccttttcagggtttttacattgtgc
actttcagttgggagccgtttatatctttaagatctttatgtggagaaat
ttttgtcacagttggtcaagtttatatcatgatttcaaagcttacacaca
tacaaataaggatatattaatagtttccaggatgatttttaaaaattaat
tgctttattctaaggtggtaaaattaagtgcttatataaacttgaaagta
agaataagattaaaaaaataaaacctttatcattaagggtttatggtacc
aatacatagtctctgccacttaagaggctgaaacagggaaacccaaagct
cagtttggaggcatagagttcaagttcagtgttgaccactgagtgaaacc
ctattgcaaaatcaaatgctgaaagagtggggctaatacatgcttgaagc
ccacagttaattaaaagtaagagctcagtattggtctaacaatgtagcaa
cagcacaagaaactggggcttttatggagctctgctccttagtggctggg
tttgtccttttactggttgctggttacttctctgtcatttttgggcattc
acttgttaagaagcaaaataaaatgaataaatactttatgccattaagct
ctgtgcaacaatcaacttcatttaccattcatggttaaaaataaacatta
tagaaacacaattataataattatattccagtaactgttttagtgaaaat
ttcattagtataaaatttactgttcaaatttatcaagttaaaatgtttca
aattctaggaggacttttttccctaattcaaatagaagaatttgatagaa
aaagcaagattggaaatcagaaaatcttaaggcactaagaaacaatataa
tgattgtaatattttaccaaattcatgaaaaatgctgatagctaggaaaa
atatctagcaataatagcttatttaagaattgtgttaagctaagatctat
agcttaatcataatggagaaccgcatggttgtttatctaactcatttcaa
ctataatgagtattcaagaagaaaactgaaccagaaatcaatcttggaga
tgaatatttttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_18303897_18305016
seq2: B6Ng01-246M06.g_68_1180

seq1  GAATTCAGTTCCCTCTTCAGGGACACCTTTTCAGGGTTTTTACATTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCTCTTCAGGGACACCTTTTCAGGGTTTTTACATTGTGC  50

seq1  ACTTTCAGTTGGGAGCCGTTTATATCTTTAAGATCTTTATGTGGAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGTTGGGAGCCGTTTATATCTTTAAGATCTTTATGTGGAGAAAT  100

seq1  TTTTGTCACAGTTGGTCAAGTTTATATCATGATTTCAAAGCTTACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCACAGTTGGTCAAGTTTATATCATGATTTCAAAGCTTACACACA  150

seq1  TACAAATAAGGATATATTAATAGTTTCCAGGATGATTTTTAAAAATTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAAGGATATATTAATAGTTTCCAGGATGATTTTTAAAAATTAAT  200

seq1  TGCTTTATTCTAAGGTGGTAAAATTAAGTGCTTATATAAACTTGAAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATTCTAAGGTGGTAAAATTAAGTGCTTATATAAACTTGAAAGTA  250

seq1  AGAATAAGATTAAAAAAATAAAACCTTTATCATTAAGGGTTTATGGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGATTAAAAAAATAAAACCTTTATCATTAAGGGTTTATGGTACC  300

seq1  AATACATAGTCTCTGCCACTTAAGAGGCTGAAACAGGGAAACCCAAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAGTCTCTGCCACTTAAGAGGCTGAAACAGGGAAACCCAAAGCT  350

seq1  CAGTTTGGAGGCATAGAGTTCAAGTTCAGTGTTGACCACTGAGTGAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGGAGGCATAGAGTTCAAGTTCAGTGTTGACCACTGAGTGAAACC  400

seq1  CTATTGCAAAATCAAATGCTGAAAGAGTGGGGCTAATACATGCTTGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCAAAATCAAATGCTGAAAGAGTGGGGCTAATACATGCTTGAAGC  450

seq1  CCACAGTTAATTAAAAGTAAGAGCTCAGTATTGGTCTAACAATGTAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTAATTAAAAGTAAGAGCTCAGTATTGGTCTAACAATGTAGCAA  500

seq1  CAGCACAAGAAACTGGGGCTTTTATGGAGCTCTGCTCCTTAGTGGCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAAGAAACTGGGGCTTTTATGGAGCTCTGCTCCTTAGTGGCTGGG  550

seq1  TTTGTCCTTTTACTGGTTGCTGGTTACTTCTCTGTCATTTTTGGGCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTTTACTGGTTGCTGGTTACTTCTCTGTCATTTTTGGGCATTC  600

seq1  ACTTGTTAAGAAGCAAAATAAAATGAATAAATACTTTATGCCATTAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTAAGAAGCAAAATAAAATGAATAAATACTTTATGCCATTAAGCT  650

seq1  CTGTGCAACAATCAACTTCATTTACCATTCATGGTTAAAAATAAACATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAACAATCAACTTCATTTACCATTCATGGTTAAAAATAAACATTA  700

seq1  TAGAAACACAATTATAATAATTATATTCCAGTAACTGTTTTAGTGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACACAATTATAATAATTATATTCCAGTAACTGTTTTAGTGAAAAT  750

seq1  TTCATTAGTATAAAATTTACTGTTCAAATTTATCAAGTTAAAATGTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGTATAAAATTTACTGTTCAAATTTATCAAGTTAAAATGTTTCA  800

seq1  AATTCTAGGAGGACTTTTTTCCCTAATTCAAAATAGAAGAATTTGATAGA  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATTCTAGGAGGACTTTTTTCCCTAATTC-AAATAGAAGAATTTGATAGA  849

seq1  AAAAGCAAGATTGGAAATCAGAAAATCTTAAGGCACTAAGAAACAATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAGATTGGAAATCAGAAAATCTTAAGGCACTAAGAAACAATATA  899

seq1  ATGATTGT-ATA-TTTACCAAATTCATGAAAAATGCTGATAGCTAGGAAA  948
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  ATGATTGTAATATTTTACCAAATTCATGAAAAATGCTGATAGCTAGGAAA  949

seq1  ATATTCTAGCAATAATAGCTTATTTAAGGAATTTGTGTTTAAAGCTAAGA  998
      |   ||||||||||||||||||||||||  | |||||||  |||||||| 
seq2  AATATCTAGCAATAATAGCTTATTTAAG--AATTGTGTT--AAGCTAAG-  994

seq1  ACCTATAGCTTAATCATTAATGGAGAACCGCATGGTTGTTTATCTAACTC  1048
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATCTATAGCTTAATCA-TAATGGAGAACCGCATGGTTGTTTATCTAACTC  1043

seq1  AATTTCAACTATAATGGAGGTATTTCAG-AGAAAACTGAACAAGAAATCA  1097
       |||||||||||||||   |||||  || |||||||||||| ||||||||
seq2  -ATTTCAACTATAATG--AGTATTCAAGAAGAAAACTGAACCAGAAATCA  1090

seq1  ATCCTTGAGATGAATATTTTTCC  1120
      ||| | |||||||||||||||||
seq2  ATCTTGGAGATGAATATTTTTCC  1113