BAC Information

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BAC

Clone NameB6Ng01-248J16
Chromosome14 (Build37)
Map Location 70,934,644 - 70,935,797
singlet/doubletsinglet
Overlap geneLgi3
Upstream geneEntpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc
Downstream geneReep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248J16.bB6Ng01-248J16.g
ACCGA056637GA056638
length1,1391,169
definitionB6Ng01-248J16.b B6Ng01-248J16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggtacctaggtgtggcctgcctctgctggtcctatcctgcag
ggaaggcgataggaggctcttttgtctaactccagtcaattcctaaagga
agaggaagggatgaaaagtggtttctgcctataaggaattcataacaaat
gaacactttgaaccaattctagccctgacacacatcaatacacctatttt
ataacataaattaaaacattttagctgggcagtggtggtgcacaccttta
atcccagcacttgggaggcagaggcaggtggatttctgagtttgaggcca
gcctggtctacagagtgagttccgggacagccagggctacacagagaaac
cctgtctcgaaaaaccaaaataataaaataataaataaataaataaataa
ataaataaataaataaatgggctggtgagatggctcagcagttaggagca
ctgactgctcttctgaaggtcctgagttcaaatcccagcaaccacatggt
ggctcacaaccatctgtaatgagacctgatgccctctcctggtgtgtctg
aatacagctacagtgtacttacatataacaataaataaatcttaaaaaaa
atacacataaagtgaattaatttataaataaatgaaacatttaactgaaa
aaatattggagaaagaaactatcctaccaggattatcctattctttgaag
aaggccagtatatacaaaataatatctataatgtacatgccttaacccca
gcatttgggaggcaagacaggcaggtttctgtgagtttaatgtcagccag
atctgcataatagaaagactccacctctaaataaataaataaataaacct
aaccaacaaacgaaattatttaatttagtaagtaattgaatactgagagc
tagggataagcccagttggttagaatgcttgcctagcgtgcacaagcccc
tcggtcatgattgtttcaaacctataatcccagtattcagagatgaaggc
aggaatctggagagttcagacagacttgactattataggatacccgtctc
aaagaaaaggaataaccaaagccaagctacaggtatgttgctcacactgg
atcgaagcatgatgcacgcagatgatcgctgcaggttca
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaaaagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctctcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgttgccgcctcagaagctctgtggctcttgccgggaaggtggc
tggttgtctggagctgaagatggtgccgccccagaatctctgtgactctc
tcgcccgtcccagaaacggctggcactctgtattccacacggtcacccgt
gcagcctgccctccgcggagtcccggagccaagaaggctcccgccggcgc
ctgtgccacaaacctctcaggccaggcagacccccgtgctctcaccagga
aaggtggccggctgtctggagctgaagatggcgccgcccagaagctctgc
gactctctcgcccgtcccagaaacggctggcactctgtattccacacggt
cacccgtgcagcctgccctccgcggagtcccggagcccaagaagctcccg
cctgcgcctgtgccacaaatcctctcaggccaggcagacctccgtgctcc
tcaccaggagttggcccggctgtctggagctgaagatggcgccgccccag
aagcttctgcgactcctctcgcccgtcccagaaacgggctgccactctct
tgtattccaccacgttcacccttgcagccttgcccttccgcccggagtcc
tgagtctagaggcttctccgccgaccctggccactactctcagccaaggc
tgaccctggtcctctcaacatgagtgcgcttgaattagtttttttcagca
cgacgacagctcgatgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_70934644_70935797
seq2: B6Ng01-248J16.b_47_1185

seq1  GAATTCCAGGTACCTAGGTGTGGCCTGCCTCTGCTGGTCCTATCCTGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTACCTAGGTGTGGCCTGCCTCTGCTGGTCCTATCCTGCAG  50

seq1  GGAAGGCGATAGGAGGCTCTTTTGTCTAACTCCAGTCAATTCCTAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCGATAGGAGGCTCTTTTGTCTAACTCCAGTCAATTCCTAAAGGA  100

seq1  AGAGGAAGGGATGAAAAGTGGTTTCTGCCTATAAGGAATTCATAACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGGGATGAAAAGTGGTTTCTGCCTATAAGGAATTCATAACAAAT  150

seq1  GAACACTTTGAACCAATTCTAGCCCTGACACACATCAATACACCTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTTGAACCAATTCTAGCCCTGACACACATCAATACACCTATTTT  200

seq1  ATAACATAAATTAAAACATTTTAGCTGGGCAGTGGTGGTGCACACCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATAAATTAAAACATTTTAGCTGGGCAGTGGTGGTGCACACCTTTA  250

seq1  ATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCA  300

seq1  GCCTGGTCTACAGAGTGAGTTCCGGGACAGCCAGGGCTACACAGAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAGTGAGTTCCGGGACAGCCAGGGCTACACAGAGAAAC  350

seq1  CCTGTCTCGAAAAACCAAAATAATAAAATAATAAATAAATAAATAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCGAAAAACCAAAATAATAAAATAATAAATAAATAAATAAATAA  400

seq1  ATAAATAAATAAATAAATGGGCTGGTGAGATGGCTCAGCAGTTAGGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATAAATGGGCTGGTGAGATGGCTCAGCAGTTAGGAGCA  450

seq1  CTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGT  500

seq1  GGCTCACAACCATCTGTAATGAGACCTGATGCCCTCTCCTGGTGTGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAACCATCTGTAATGAGACCTGATGCCCTCTCCTGGTGTGTCTG  550

seq1  AATACAGCTACAGTGTACTTACATATAACAATAAATAAATCTTAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCTACAGTGTACTTACATATAACAATAAATAAATCTTAAAAAAA  600

seq1  ATACACATAAAGTGAATTAATTTATAAATAAATGAAACATTTAACTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATAAAGTGAATTAATTTATAAATAAATGAAACATTTAACTGAAA  650

seq1  AAATATTGGAGAAAGAAACTATCCTACCAGGATTATCCTATTCTTTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGGAGAAAGAAACTATCCTACCAGGATTATCCTATTCTTTGAAG  700

seq1  AAGGCCAGTATATACAAAATAATATCTATAATGTACATGCCTTAACCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGTATATACAAAATAATATCTATAATGTACATGCCTTAACCCCA  750

seq1  GCATTTGGGAGGCAAGACAGGCAGGTTTCTGTGAGTTTAAGGTCAGCCAG  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCATTTGGGAGGCAAGACAGGCAGGTTTCTGTGAGTTTAATGTCAGCCAG  800

seq1  ATCTGCATAATAGAAAGACTCCACCTCTAAATAAATAAATAAATAAA-CT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATCTGCATAATAGAAAGACTCCACCTCTAAATAAATAAATAAATAAACCT  850

seq1  AACCAACAAACG-AATTATTTAATTAAGTAAGTAATTGAATACTGAGAGC  898
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  AACCAACAAACGAAATTATTTAATTTAGTAAGTAATTGAATACTGAGAGC  900

seq1  TAGGGATAAAGCCCAGTTGG-TAGAATGCTTGCCTAGCGTGCACAAAGCC  947
      ||||||| |||||||||||| ||||||||||||||||||||||| |||||
seq2  TAGGGAT-AAGCCCAGTTGGTTAGAATGCTTGCCTAGCGTGCAC-AAGCC  948

seq1  CCTCGGTTCATGATTG-TTCAAACCTATAATCCCAGTATTTCAGAGATGA  996
      |||||| ||||||||| ||||||||||||||||||||| |||||||||||
seq2  CCTCGG-TCATGATTGTTTCAAACCTATAATCCCAGTA-TTCAGAGATGA  996

seq1  AGGCAGGAATCTGGAGAGTTCAAGACCAGACTTGACTA-TATAGTGATAA  1045
      ||||||||||||||||||||| ||| |||||||||||| ||||| |||| 
seq2  AGGCAGGAATCTGGAGAGTTC-AGA-CAGACTTGACTATTATAG-GATAC  1043

seq1  CCGTCTCAAAGAAAAGAATAAAACAAAGCAAAGCTTACCAGGGTATGGTG  1095
      |||||||||||||||| |  || |||||| |||| |||   ||||| || 
seq2  CCGTCTCAAAGAAAAGGAATAACCAAAGCCAAGC-TAC--AGGTAT-GTT  1089

seq1  GCTCACACTTGGGATCCAGAGCACTTGGGATGCAGCGAAAGATGATCGCT  1145
      |||||||||  ||||| | ||||     |||||| ||  |||||||||||
seq2  GCTCACACT--GGATCGA-AGCA----TGATGCA-CG-CAGATGATCGCT  1130

seq1  GCAAGTTCA  1154
      ||| |||||
seq2  GCAGGTTCA  1139