BAC Information

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BAC

Clone NameB6Ng01-249J13
Chromosome14 (Build37)
Map Location 78,441,017 - 78,550,536
singlet/doubletdoublet
Overlap geneAU021034
Upstream geneCcdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1
Downstream geneTnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249J13.bB6Ng01-249J13.g
ACCGA057376GA057377
length7281,080
definitionB6Ng01-249J13.b B6Ng01-249J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,549,810 - 78,550,536)(78,441,017 - 78,442,085)
sequence
gaattcagtccttggactcgacaatgctttctatgagagctgtggtcctg
gtctgcagggccactgtgttacctgagcacgttagtgacagtctgagtca
ttgctgtaatggtcattttagtatatcagaaacataatcagcttgggtcc
catttgatagaatgcttgctctcttattatagaaagccactgccctcagt
ttcttttctcccttgggcattagtttatatttaggtaaaacatcagatat
gtgcaagattgagaggtgtcacactggtggctttggtgttccaaaatggt
atttttaaaaatgtttgtcatagaaagagagctagaaagaggactttcca
gaaggtagtctaagccttggctctcactgcctcttctcaggagtccgagt
gctagcctcactgtttgcttttataaaggcctccctgcttattctgtagg
tacctgtcacctggcttcagctgaccagaccagggatagagcctgatcag
actttccaggtacctcgaacaagagctccattcaaagggctgccatatgt
ataatagttgggtttgtgtgagattttctttaggaaactttgggtcaaag
gtctcagagtgatgcaggtgaggagtcgggtgtagaggcagtggggcata
gtggttaagggcatgagcaaacaggaagtatggaaagtcgggagaataaa
gagagaaaggggaaggggtggagaaagt
gaattctttatatcctatttatccttccctgccccccctcaggctattaa
gtgaagcataatattgaaataattttagattcatgggaaatgtatgtata
tgtccctctgcccaaaggtacctgcatgtgcacctgtgtaaaacagaaaa
catgtaaaattccacttactgaaagttaaatagaaataaaattatatgat
tgtctcaagccttatgtctgtgctggagtacaaaagcctttcttaggctc
gtcagtgagaaatgtgatcactctttctactctcttaaatcacatacttg
atataaagccttgtccccagacaaatagaagttaagtcgtttttaaaatt
attgtaatttaaagaaactttcgcctttatctcaacaaagtgcaagtgtc
tctttttttcatatcattgagtcctcctgatacctatgaatactattaca
gagaataaacagagcagacgtgcctgcctgcactttagacagccggctct
tggtatacgtagtagaatgagtgatgtgacacgtgtaccagccttcttcc
tgcctgtgcagcactgagtttgccaggctggctgtgcagggttctaccag
gcagacccgatgtccagtgacagaggtgctgagactcctctgctctttgt
ttccagtgtagaagaaacacagcggttgtggagccaatggtcctaagcag
tttcccagttctgagaaggagggaagtacagaagagattcccgaagcttt
gctgatctcctagggtatcagtctgtgggagggtcagagaaagagaaaaa
ataggagtagtgctaagaaattgggctcctgtgatagcaaacagctggct
ggttggccggctctaaaatttgtaggcttattggaatctcccggagtctc
taggggtagcctaaaaactctgggatttgtatgtttcctgtgctgaggca
aaaatccccggttctctggaaacctcggtctttttctttacgtcaccgat
agaacattagatattccccaaactcccagacaatattaagtgaaacatcc
actggagctggggaagagggcctcagtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78549810_78550536
seq2: B6Ng01-249J13.b_45_772 (reverse)

seq1  ACTTTCTCCACCCCTTCCCCTTTCTCTC-TTATTCTCCCGACTTTCCATA  49
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACTTTCTCCACCCCTTCCCCTTTCTCTCTTTATTCTCCCGACTTTCCATA  50

seq1  CTTCCTGTTTGCTCATGCCCTTAACCACTATGCCCCACTGCCTCTACACC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTTTGCTCATGCCCTTAACCACTATGCCCCACTGCCTCTACACC  100

seq1  CGACTCCTCACCTGCATCACTCTGAGACCTTTGACCCAAAGTTTCCTAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCCTCACCTGCATCACTCTGAGACCTTTGACCCAAAGTTTCCTAAA  150

seq1  GAAAATCTCACACAAACCCAACTATTATACATATGGCAGCCCTTTGAATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTCACACAAACCCAACTATTATACATATGGCAGCCCTTTGAATG  200

seq1  GAGCTCTTGTTCGAGGTACCTGGAAAGTCTGATCAGGCTCTATCCCTGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTTGTTCGAGGTACCTGGAAAGTCTGATCAGGCTCTATCCCTGGT  250

seq1  CTGGTCAGCTGAAGCCAGGTGACAGGTACCTACAGAATAAGCAGGGAGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAGCTGAAGCCAGGTGACAGGTACCTACAGAATAAGCAGGGAGGC  300

seq1  CTTTATAAAAGCAAACAGTGAGGCTAGCACTCGGACTCCTGAGAAGAGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAAAAGCAAACAGTGAGGCTAGCACTCGGACTCCTGAGAAGAGGC  350

seq1  AGTGAGAGCCAAGGCTTAGACTACCTTCTGGAAAGTCCTCTTTCTAGCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGCCAAGGCTTAGACTACCTTCTGGAAAGTCCTCTTTCTAGCTC  400

seq1  TCTTTCTATGACAAACATTTTTAAAAATACCATTTTGGAACACCAAAGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTATGACAAACATTTTTAAAAATACCATTTTGGAACACCAAAGCC  450

seq1  ACCAGTGTGACACCTCTCAATCTTGCACATATCTGATGTTTTACCTAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTGACACCTCTCAATCTTGCACATATCTGATGTTTTACCTAAAT  500

seq1  ATAAACTAATGCCCAAGGGAGAAAAGAAACTGAGGGCAGTGGCTTTCTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTAATGCCCAAGGGAGAAAAGAAACTGAGGGCAGTGGCTTTCTAT  550

seq1  AATAAGAGAGCAAGCATTCTATCAAATGGGACCCAAGCTGATTATGTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGAGCAAGCATTCTATCAAATGGGACCCAAGCTGATTATGTTTC  600

seq1  TGATATACTAAAATGACCATTACAGCAATGACTCAGACTGTCACTAACGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATACTAAAATGACCATTACAGCAATGACTCAGACTGTCACTAACGT  650

seq1  GCTCAGGTAACACAGTGGCCCTGCAGACCAGGACCACAGCTCTCATAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGTAACACAGTGGCCCTGCAGACCAGGACCACAGCTCTCATAGAA  700

seq1  AGCATTGTCGAGTCCAAGGACTGAATTC  727
      ||||||||||||||||||||||||||||
seq2  AGCATTGTCGAGTCCAAGGACTGAATTC  728

seq1: chr14_78441017_78442085
seq2: B6Ng01-249J13.g_72_1151

seq1  GAATTCTTTATATCCTATTTATCCTTCCCTGCCCCCCCTCAGGCTATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATCCTATTTATCCTTCCCTGCCCCCCCTCAGGCTATTAA  50

seq1  GTGAAGCATAATATTGAAATAATTTTAGATTCATGGGAAATGTATGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCATAATATTGAAATAATTTTAGATTCATGGGAAATGTATGTATA  100

seq1  TGTCCCTCTGCCCAAAGGTACCTGCATGTGCACCTGTGTAAAACAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCTGCCCAAAGGTACCTGCATGTGCACCTGTGTAAAACAGAAAA  150

seq1  CATGTAAAATTCCACTTACTGAAAGTTAAATAGAAATAAAATTATATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAAATTCCACTTACTGAAAGTTAAATAGAAATAAAATTATATGAT  200

seq1  TGTCTCAAGCCTTATGTCTGTGCTGGAGTACAAAAGCCTTTCTTAGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAGCCTTATGTCTGTGCTGGAGTACAAAAGCCTTTCTTAGGCTC  250

seq1  GTCAGTGAGAAATGTGATCACTCTTTCTACTCTCTTAAATCACATACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGAGAAATGTGATCACTCTTTCTACTCTCTTAAATCACATACTTG  300

seq1  ATATAAAGCCTTGTCCCCAGACAAATAGAAGTTAAGTCGTTTTTAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGCCTTGTCCCCAGACAAATAGAAGTTAAGTCGTTTTTAAAATT  350

seq1  ATTGTAATTTAAAGAAACTTTCGCCTTTATCTCAACAAAGTGCAAGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATTTAAAGAAACTTTCGCCTTTATCTCAACAAAGTGCAAGTGTC  400

seq1  TCTTTTTTTCATATCATTGAGTCCTCCTGATACCTATGAATACTATTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTCATATCATTGAGTCCTCCTGATACCTATGAATACTATTACA  450

seq1  GAGAATAAACAGAGCAGACGTGCCTGCCTGCACTTTAGACAGCCGGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAAACAGAGCAGACGTGCCTGCCTGCACTTTAGACAGCCGGCTCT  500

seq1  TGGTATACGTAGTAGAATGAGTGATGTGACACGTGTACCAGCCTTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATACGTAGTAGAATGAGTGATGTGACACGTGTACCAGCCTTCTTCC  550

seq1  TGCCTGTGCAGCACTGAGTTTGCCAGGCTGGCTGTGCAGGGTTCTACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGCAGCACTGAGTTTGCCAGGCTGGCTGTGCAGGGTTCTACCAG  600

seq1  GCAGACCCGATGTCCAGTGACAGAGGTGCTGAGACTCCTCTGCTCTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCCGATGTCCAGTGACAGAGGTGCTGAGACTCCTCTGCTCTTTGT  650

seq1  TTCCAGTGTAGAAGAAACACAGCGGTTGTGGAGCCAATGGTCCTAAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGTAGAAGAAACACAGCGGTTGTGGAGCCAATGGTCCTAAGCAG  700

seq1  TTTCCCAGTTCTGAGAAGGAGGGAAGTACAGAAGAGATTCCCGAAGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGTTCTGAGAAGGAGGGAAGTACAGAAGAGATTCCCGAAGCTTT  750

seq1  GCTGATCTCCTAGGGTATCAGTCTGTGGGAGGGTCAGAGAAAGAGAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTCCTAGGGTATCAGTCTGTGGGAGGGTCAGAGAAAGAGAAAAA  800

seq1  ATAGGAGTAGTGCTAAGAAATT-GGCTCCTGTGATAGCAAACAGCTGGCT  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAGGAGTAGTGCTAAGAAATTGGGCTCCTGTGATAGCAAACAGCTGGCT  850

seq1  GGTT-GCCGGCTCTAAAATTTGTAGGC-TATTGGAATCT-CCGGAGTCTC  896
      |||| |||||||||||||||||||||| ||||||||||| ||||||||||
seq2  GGTTGGCCGGCTCTAAAATTTGTAGGCTTATTGGAATCTCCCGGAGTCTC  900

seq1  TA-GGGTAGCCTAAAAACTCT-GGATTTGTATGTTT-CTGTGCTGAGGCA  943
      || |||||||||||||||||| |||||||||||||| |||||||||||||
seq2  TAGGGGTAGCCTAAAAACTCTGGGATTTGTATGTTTCCTGTGCTGAGGCA  950

seq1  AAAAT-CCCGGTTCTCTGGAAACCTCGGTTCTTTTTCTTTACGTCAACCG  992
      ||||| |||||||||||||||||||||| |||||||||||||||| ||||
seq2  AAAATCCCCGGTTCTCTGGAAACCTCGG-TCTTTTTCTTTACGTC-ACCG  998

seq1  ATAG-ACATTAGATA-TCCCCAAACTCACAGAC-ATATTAAGTGAAACAT  1039
      |||| |||||||||| ||||||||||| ||||| ||||||||||||||||
seq2  ATAGAACATTAGATATTCCCCAAACTCCCAGACAATATTAAGTGAAACAT  1048

seq1  CAGTTGGAGCTGGGG-AGAGGG-CTCAGTGGA  1069
      |   ||||||||||| |||||| |||||||||
seq2  CCACTGGAGCTGGGGAAGAGGGCCTCAGTGGA  1080