BAC Information

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BAC

Clone NameB6Ng01-249O01
Chromosome14 (Build37)
Map Location 89,616,028 - 89,617,179
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249O01.bB6Ng01-249O01.g
ACCGA057583GA057584
length1,1301,199
definitionB6Ng01-249O01.b B6Ng01-249O01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgatttcatattaacctcctgcagactccacttcttagtactga
aatactcaagttcagtttagggcaaatattgaagggcacacagcattcaa
ctctttgccacagtgtgatacaattttctattcacatattttgctgtaca
gatggatagaaggctgtgctcctttcatttttttcttcatttttttattt
tcagattttatttacaattttatttaaaatttttattttatttacatgag
tgtttatctgaatctatgtctgtgtaccacatccatgatccatgtagtgg
ttaagaaggccataaaagacaatgagaaccactgtggctgtagtcacaac
gttatgagttgccaaatggatacaaggatttgaatctctgctcctaaaat
agaacacagtaattttaaccactgtgtcatcagaccctatcaggttcttg
ttttaggtgggaacttctaatcctattctgtgactttcacttgggttctg
atatcttgagttatcatagttataaatttcagctacacggctattcatgt
cagtagacacacatagaaagacctctgttcaatactatttaatgcattgt
tgttatacctttatctatgtcatccctaaccctccatacttgaattttaa
caaagtcatcttttttttctacaaacttgcataaaaatgactcatgaatt
tgtttatgtggagttttagaaaatttttttcatagtatgcaaataatatt
gttaaagttgcttttcccccctctgttaccaagtaaggctttgctattgt
catcgattaaatgtaatctttgcctagaggcttaaaatgctgaaaagctg
tgtttacataaatgttaatggtaattgaatttactcacaatataattgtt
aatagaagttcaatttttttagaatgtttgttgttggcattcaattaatt
gctaaaggttcataaccaacagtatatactgatattacttactaagatct
atattaggtttggggtaccaaaccttatatgaatgcaagtcatattttaa
cagaaatatagaagaatgttatatgattaacttttatatatgtataaaat
atatgattttgtatatacaaatgactgttt

gaattctcttcagctgttttcttggtttttatttttattaattaatttat
ttttttatattccatattttatttcccctgatccacctgccaaagctcct
ttcccctacctgtcaccacatggatgtccctacccccaactccacctgac
ctctaaactccctggggactgcagtttcttaagggttaggtgcctcatct
atgaatgaacactggcccagcagtcgtctactgtatgtgtgttgggggcc
tcctatcagcaagtgtatgctgcctgtttggtggtccaatgtctgagata
tctcaggggtccagattaattgagactgctgttcctcctacaggatcacc
cttctcttcaggttcttccagtcttccctaattcaacagcaggagtcagc
tgcttctgtccattggttgtgtgcaaatatctgcatcctatctcctgagg
ttgcctatttccattgtttctgtttccctctgggtttccgtccttttccc
tcacccaataccagaccaggttcccctcccctcttccttccctgtccaat
ttccctcccaggtccctccctccctcccacttgagattgttttcttctct
ccccaaagtgaaactgaggtgtccttacttgggtccttcagctttttgaa
atttttgattctgtactttcttttttggctaatatctacttattagtgag
gacataccatgcatgtccttttaggtgtgagttacgtcactcaggatgac
attttctagttttgtacattttcctgcaaaactcaggatgccctcatttc
gtaacagctgagtactattccaatgtgtaaatgaaccaaattttctgtat
ccactcttttgtcatggggacatctcagtttgtttctagcttctggctac
cacaaataaggccactaagaaaatagtgggtacagtttgcccctggtggg
catggtggtggcatctttttgggtatattcccaaggagttggtatagctt
tggtcttcaggtagatctatttccaattttcagaagggaactttctattc
tgatgtccagagtgtgtttgtaatgggtttgcattccacaaggcaatgga
ggactgttctttttttcacattcctcttcaactgggttgtcactgaggat
ttgaatctaggtatctggactggttataatgggtgggaactccctcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89616028_89617179
seq2: B6Ng01-249O01.b_45_1174

seq1  GAATTCTGATTTCATATTAACCTCCTGCAGACTCCACTTCTTAGTACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTTCATATTAACCTCCTGCAGACTCCACTTCTTAGTACTGA  50

seq1  AATACTCAAGTTCAGTTTAGGGCAAATATTGAAGGGCACACAGCATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCAAGTTCAGTTTAGGGCAAATATTGAAGGGCACACAGCATTCAA  100

seq1  CTCTTTGCCACAGTGTGATACAATTTTCTATTCACATATTTTGCTGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCCACAGTGTGATACAATTTTCTATTCACATATTTTGCTGTACA  150

seq1  GATGGATAGAAGGCTGTGCTCCTTTCATTTTTTTCTTCATTTTTTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATAGAAGGCTGTGCTCCTTTCATTTTTTTCTTCATTTTTTTATTT  200

seq1  TCAGATTTTATTTACAATTTTATTTAAAATTTTTATTTTATTTACATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTTATTTACAATTTTATTTAAAATTTTTATTTTATTTACATGAG  250

seq1  TGTTTATCTGAATCTATGTCTGTGTACCACATCCATGATCCATGTAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCTGAATCTATGTCTGTGTACCACATCCATGATCCATGTAGTGG  300

seq1  TTAAGAAGGCCATAAAAGACAATGAGAACCACTGTGGCTGTAGTCACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGGCCATAAAAGACAATGAGAACCACTGTGGCTGTAGTCACAAC  350

seq1  GTTATGAGTTGCCAAATGGATACAAGGATTTGAATCTCTGCTCCTAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAGTTGCCAAATGGATACAAGGATTTGAATCTCTGCTCCTAAAAT  400

seq1  AGAACACAGTAATTTTAACCACTGTGTCATCAGACCCTATCAGGTTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAGTAATTTTAACCACTGTGTCATCAGACCCTATCAGGTTCTTG  450

seq1  TTTTAGGTGGGAACTTCTAATCCTATTCTGTGACTTTCACTTGGGTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTGGGAACTTCTAATCCTATTCTGTGACTTTCACTTGGGTTCTG  500

seq1  ATATCTTGAGTTATCATAGTTATAAATTTCAGCTACACGGCTATTCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGAGTTATCATAGTTATAAATTTCAGCTACACGGCTATTCATGT  550

seq1  CAGTAGACACACATAGAAAGACCTCTGTTCAATACTATTTAATGCATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGACACACATAGAAAGACCTCTGTTCAATACTATTTAATGCATTGT  600

seq1  TGTTATACCTTTATCTATGTCATCCCTAACCCTCCATACTTGAATTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATACCTTTATCTATGTCATCCCTAACCCTCCATACTTGAATTTTAA  650

seq1  CAAAGTCATCTTTTTTTTCTACAAACTTGCATAAAAATGACTCATGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCATCTTTTTTTTCTACAAACTTGCATAAAAATGACTCATGAATT  700

seq1  TGTTTATGTGGAGTTTTAGAAAATTTTTTTCATAGTATGCAAATAATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGTGGAGTTTTAGAAAATTTTTTTCATAGTATGCAAATAATATT  750

seq1  GTTAAAGTTGCTTTTCCCCCCTCTGTTACCAAGTAAGGCTTTGCTATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGTTGCTTTTCCCCCCTCTGTTACCAAGTAAGGCTTTGCTATTGT  800

seq1  CATCGATTAAATGTAATCTTTGCCTAGAGGCTTAAAATGCTGAAAAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGATTAAATGTAATCTTTGCCTAGAGGCTTAAAATGCTGAAAAGCTG  850

seq1  TGTTTACATAAATGTTAATGGTAATTGAATTTACTCACAATATAATTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACATAAATGTTAATGGTAATTGAATTTACTCACAATATAATTGTT  900

seq1  AATAGAAGTTCAATTTTTTTAGAATGTTTGTTGTTGGCAATTCAATTAAT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATAGAAGTTCAATTTTTTTAGAATGTTTGTTGTTGGC-ATTCAATTAAT  949

seq1  TGCTAAAGGTTCAATAAACCAAACAGTATATACTGATAATTAACTTACTA  1000
      |||||||||||| ||||  | |||||||||||||||||  | ||||||| 
seq2  TGCTAAAGGTTC-ATAA--CCAACAGTATATACTGATA--TTACTTACT-  993

seq1  AAGATCTTAATAATTAGGTTTGGGGTAACCAAACCTTATATGAATGCAAA  1050
      |||||||  || |||||||||||||| |||||||||||||||||||| ||
seq2  AAGATCT--AT-ATTAGGTTTGGGGT-ACCAAACCTTATATGAATGC-AA  1038

seq1  GTCATATTTTAAACAGAAATATAGAGAAATGTTATATTGATTTTACTTTT  1100
      |||||||||| ||||||||||||||  ||||||||| ||| || ||||| 
seq2  GTCATATTTT-AACAGAAATATAGAAGAATGTTATA-TGA-TTAACTTT-  1084

seq1  ATATATATGTATAAAATATAAATGATTTTTTGTAATACAAAATGAACTGT  1150
       ||||||||||||||||||  |||||||| | | |||| ||||| |||||
seq2  -TATATATGTATAAAATAT--ATGATTTTGTAT-ATAC-AAATG-ACTGT  1128

seq1  TT  1152
      ||
seq2  TT  1130


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