BAC Information

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BAC

Clone NameB6Ng01-250A06
Chromosome14 (Build37)
Map Location 122,173,395 - 122,174,603
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668837, Ranbp5, Farp1, LOC100043837, Stk24, Slc15a1, LOC100043577, Dock9
Downstream geneLOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250A06.bB6Ng01-250A06.g
ACCGA057679GA057680
length1,2131,174
definitionB6Ng01-250A06.b B6Ng01-250A06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttagactattccagagagagacagtgacaaactggcagacaga
cacagagaaagagagacagagacagagaaactaaaattaaaaaaaaaaaa
aaatagtagggggtttaaaacatgtcctcaagtaggattccatcagagac
ccacactgtaggaatgttctagaaaccttcaaaaataaaatctgtgaccc
tggctagaagcgggaaagggggaatatgtgaggaaccggaaaggcaggag
gagagcaggaaacggcactgtttgtgctggctagggatgccccagcctgc
acctgataagagaaggctggctgggccaacgggtgaagggagaggtgaac
gggggcgcagaggtgaagggaggtttgtcaggcagcagcacatctgctgc
cagagccaagacaacgtagcaacaggccaggaatctggatgggggttctg
atggaaagccacccgcaactgcacatggcactaactacatgaaattgatt
acatgcatacagctatgcctgttcccggattcttccttcaggctgacatt
actgactaacaagcctgcacagtgtctctccagtcttaagggaagacaga
ctccagactggaaccccgaatgctagagcagatccaaggcccatcataaa
tccccagcccagcagctgggctctttctgcagaagcaaacccagctgtac
tgagctccacagggcacagtctctgtaataaaggtgtctttgtggctgag
tgaaacagagcccagtccgcttactgtattctacgccaaatgctctgaag
atgacaaatccaaattccacaggctcttcttccaagccagagaacacaaa
gtcggttcctgtaagtagttattcctataggaagcaccaaatacatgtat
gggccattttgagaatgtatgagagtttgaagtcatcccttggctacaca
gtgagtttaagaccagcctgggctacaaaaaaaaaaaaaaaaccctctct
caaaaaacgagaatatttaaagatgttttcggctaaaaaattataactga
ataacatgaacaaggaagatcagctgccctgtgtgtgttcagctgctgct
tttctgaacttggtgagagccggtgtgaccgtgcgcctgagagcctagca
tctgctcaatccttgggagagcctttgagcaagtctatgagtggaagccg
tctcgtataaagt
gaattcaaggtccctacctaaacatagtaaaagcaatatgcagcaaacca
gtagccaacatcaaactaaatggagagaaacttgaagcaatcccactaaa
atcagagactagacaaggctgcccactctctccctatctattcaacatag
aacttgaagatctagccagagcaattagacaacaaaaggatgtcaaaggg
atacaaattggaaagaagtcaaaatatcactatttgcagatgatacgatc
atatacttaagtgaccccaaaaatttcaccagagaactccttatagctga
ttaacaacttcagcaaagtggctggatataaaattaatgcaaacaaatca
gtagccttcctctactcaaaggataaacaggctgagaaagaaattagaga
aacaatacccttcacaatagtcacaaataatattacataccttggtgtga
ctctaaccaagcaagtgaaagatctgtatgacaagaacttcaagtctctg
aagaaagaaattgaagaagatctcaaaagatggaaagatctcccttgctc
atggattggcaggattaatatagtaaaaatggctatcctgccaaaagcaa
tctacagattcaatgcaatccccatcaaaattccaactcaattcttcact
gagttagaaagagcaatttgcaaattcatttggaaaaacaaaaaaactca
ggatagcaaaaactattctcaacaataacagaactcctgggggaatcacc
atccctgacctcaagctgtattacaaagcaatagtgataaaaactgcacg
gtattggtatatagagaggcaggaagatcaatggaatagtattgaagacc
cagaaatgaacccacacacctatggtcacttcatctttgacaaaggagcc
ataaccatccagtggaaaaaaagaccacattttaaacaatggtgctggtt
caactggtggtcagcatgtagaaaatgcaatcgacccattctcatctcct
gtacaagctcagtcaagtggacagactcataataaaacagaagacactga
aactataaggagaagtgggtagagctgaacacaggtcacagggaacttct
gaacgaacacaagcttggcctggaatcgaataccatggaacttaaattgc
aatctccgtaaggcaacggaccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_122173395_122174603
seq2: B6Ng01-250A06.b_45_1257

seq1  GAATTCTTTAGACTATTCCAGAGAGAGACAGTGACAAACTGGCAGACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGACTATTCCAGAGAGAGACAGTGACAAACTGGCAGACAGA  50

seq1  CACAGAGAAAGAGAGACAGAGACAGAGAAACTAAAATTAAAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAAGAGAGACAGAGACAGAGAAACTAAAATTAAAAAAAAAAAA  100

seq1  AAATAGTAGGGGGTTTAAAACATGTCCTCAAGTAGGATTCCATCAGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAGGGGGTTTAAAACATGTCCTCAAGTAGGATTCCATCAGAGAC  150

seq1  CCACACTGTAGGAATGTTCTAGAAACCTTCAAAAATAAAATCTGTGACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGTAGGAATGTTCTAGAAACCTTCAAAAATAAAATCTGTGACCC  200

seq1  TGGCTAGAAGCGGGAAAGGGGGAATATGTGAGGAACCGGAAAGGCAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGAAGCGGGAAAGGGGGAATATGTGAGGAACCGGAAAGGCAGGAG  250

seq1  GAGAGCAGGAAACGGCACTGTTTGTGCTGGCTAGGGATGCCCCAGCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGGAAACGGCACTGTTTGTGCTGGCTAGGGATGCCCCAGCCTGC  300

seq1  ACCTGATAAGAGAAGGCTGGCTGGGCCAACGGGTGAAGGGAGAGGTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATAAGAGAAGGCTGGCTGGGCCAACGGGTGAAGGGAGAGGTGAAC  350

seq1  GGGGGCGCAGAGGTGAAGGGAGGTTTGTCAGGCAGCAGCACATCTGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCGCAGAGGTGAAGGGAGGTTTGTCAGGCAGCAGCACATCTGCTGC  400

seq1  CAGAGCCAAGACAACGTAGCAACAGGCCAGGAATCTGGATGGGGGTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAAGACAACGTAGCAACAGGCCAGGAATCTGGATGGGGGTTCTG  450

seq1  ATGGAAAGCCACCCGCAACTGCACATGGCACTAACTACATGAAATTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGCCACCCGCAACTGCACATGGCACTAACTACATGAAATTGATT  500

seq1  ACATGCATACAGCTATGCCTGTTCCCGGATTCTTCCTTCAGGCTGACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATACAGCTATGCCTGTTCCCGGATTCTTCCTTCAGGCTGACATT  550

seq1  ACTGACTAACAAGCCTGCACAGTGTCTCTCCAGTCTTAAGGGAAGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTAACAAGCCTGCACAGTGTCTCTCCAGTCTTAAGGGAAGACAGA  600

seq1  CTCCAGACTGGAACCCCGAATGCTAGAGCAGATCCAAGGCCCATCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACTGGAACCCCGAATGCTAGAGCAGATCCAAGGCCCATCATAAA  650

seq1  TCCCCAGCCCAGCAGCTGGGCTCTTTCTGCAGAAGCAAACCCAGCTGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCCCAGCAGCTGGGCTCTTTCTGCAGAAGCAAACCCAGCTGTAC  700

seq1  TGAGCTCCACAGGGCACAGTCTCTGTAATAAAGGTGTCTTTGTGGCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCACAGGGCACAGTCTCTGTAATAAAGGTGTCTTTGTGGCTGAG  750

seq1  TGAAACAGAGCCCAGTCCGCTTACTGTATTCTACGCCAAATGCTCTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGAGCCCAGTCCGCTTACTGTATTCTACGCCAAATGCTCTGAAG  800

seq1  ATGACAAATCCAAATTCCACAGGCTCTTCTTCCAAGCCAGAGAACACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAATCCAAATTCCACAGGCTCTTCTTCCAAGCCAGAGAACACAAA  850

seq1  GTCGGTTCCTGTAAGTAGTTATTCCTATAGGAAGCACCAAATACATGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTTCCTGTAAGTAGTTATTCCTATAGGAAGCACCAAATACATGTAT  900

seq1  GGGCCATTTTGAGAATGTATGAGAGTTTGAAGTCAT-CCTTGGCTACACA  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGCCATTTTGAGAATGTATGAGAGTTTGAAGTCATCCCTTGGCTACACA  950

seq1  GTGAGTTTAAGACCAGCCTGGGCTACAAAAAAAAAAAAAAAAAACCCTCT  999
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  GTGAGTTTAAGACCAGCCTGGGCTAC--AAAAAAAAAAAAAAAACCCTCT  998

seq1  CTCAAAAAAACGAGAATAATTTAAAGATGTTTTCGGCCTACAGA-TATAA  1048
      ||| ||||||||||||| |||||||||||||||||||  | | | |||||
seq2  CTC-AAAAAACGAGAAT-ATTTAAAGATGTTTTCGGCTAAAAAATTATAA  1046

seq1  CTG-ATAACATGAACA--GGAGATCCAGCTGCCC--TGTGTGTCCAGCTG  1093
      ||| ||||||||||||  | |||| |||||||||  ||||||| ||||||
seq2  CTGAATAACATGAACAAGGAAGAT-CAGCTGCCCTGTGTGTGTTCAGCTG  1095

seq1  CTGC-TTTCTG-ACATTGTGAG-GCC-GTGTGA-CGTGGCGCTGAGAAGC  1138
      |||| |||||| || | ||||| ||| |||||| ||||   ||||| |||
seq2  CTGCTTTTCTGAACTTGGTGAGAGCCGGTGTGACCGTGCGCCTGAG-AGC  1144

seq1  CAAGCATCGTGGCTC-ATACTTGGGAG-GC--TTGAGGCAAGAGTGCTAT  1184
      | ||||||   |||| || |||||||| ||  |||| |||||    ||||
seq2  CTAGCATC--TGCTCAATCCTTGGGAGAGCCTTTGA-GCAAG---TCTAT  1188

seq1  GAGTGGAGGCCTGTCT-GTATAAAGT  1209
      ||||||| ||| |||| |||||||||
seq2  GAGTGGAAGCC-GTCTCGTATAAAGT  1213