BAC Information

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BAC

Clone NameB6Ng01-250A23
Chromosome14 (Build37)
Map Location 111,728,851 - 111,730,003
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250A23.bB6Ng01-250A23.g
ACCGA057711GA057712
length1,1731,212
definitionB6Ng01-250A23.b B6Ng01-250A23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttgattagaaatggctgaccaagaaaatctaagaaaaataat
gcttttctcaatgtacttaactcaataatattagtaaatttgcctacatt
ttattatgtggacactttaggagcgtatttttcaggctagcaccacagct
aagtattttgttgttgttgttgttgttgttgaaggtaaaaatagaaatat
aataaaatcaggattttttgcatttattttagcaacaaaattaatcaatt
aatttatgctatggaagggtaagaaatgttttatttattttaaccaatga
acttcttagagaaaaataagtccatagattttgacattatgtgctagaca
tcttcatatgcttcctgctagcataaagctttgaaagaatctagaacttt
ttattgtaatatggaaggtccatatatatttactatatttatagtcttat
gaactatatattcagcatgactatataaatcttacttccaaatatcaaga
gaattaattaatttatatcatacaaatattggtttaagtaatatgtggct
taaaaatagtaagatttcttttttcctccagttttctcagtttcttcata
aaattcatattaatacctagaatttaattgccttataagcttattaatat
atttttcataatgaattctatatcaagtactacagatacagcatttcaca
gagctcattattgcttactttacgttctttctttgagacgaatctgagat
ttctttgatatttgataagagagaagaaaacatagaagcagcaaaacaag
tgccaacaccaatgtataaaatattgattaaaattatcagattctaaatt
gtacagaattgaacaatatgaatggtttacaatttgtgaagatcttggtg
agattcataagtgtgatgatatgactggagcatcacagaataataaaact
cctgagaccttaaactgataaaacataactgatcttatttttaaaatgct
gcggattctttacaataataggaccaaataaattcctcttatcatttttc
tagaagtggaattacagaaaattgtcattgttctatttctagagaaagcc
tttgtttacgccaggatgcactggtctatataagtcctcccacatgtctg
tttccaagatatcaggcgctgga

gaattctgtttaggaaacttccccctgtgcccatgagttcacggctcctt
tccactttctcttctattagattcagtatatctggttttatgttgaggtc
cttgatctacttggacttgagctttgtgcaaggtgacaaatataggtcta
atttcatttttctacagacagccaacaagaccagcagcacttagtgaaga
tgcttttttttcccccattgtatatttttggcttctttatcaacaatcaa
gtgaccataagtgtgtggttttaaatctgggtcttcgattctattccatt
gatcaatgtgtctgtatctgtaccaatatcatgcagtttttatcactatt
gctcagtaataaagcttgaggtcaaggatagtgattcccgaagccatact
tttattgttaaacattgtgggttttttttgttttgttttggtttggtttt
tgtttgccttttcagatgaatttgagaattgctctttccatatctttgaa
taattgtgttgggattttgatggggattgaaatgaatctgtagattgctt
ttgataaaaaaggatagccatttttactacattaattctgccaatccatg
agcatgggaaatctctccgttttctgaaatcttccttgtgttctttcttg
gaagacttgaagttattgtcatacagatatttcacttgtttggttagagt
tacctcaagatattttgtttaatttgtggctactgtgaaggaagttcttt
tcctaattttttctctcagcttgtttatcatttgtatagaggaaggctaa
tgatttatttgagttaattttatatctggccaatttgctgaagttattaa
tcagctggagattttcattggtagaagttttagggtctgttatgtatact
atcttatcatctgtaaatagtgatacctttatttcttctttgccaatttg
tacctgaggaccttattttataccaatcctggcatatacaccaaaaagaa
tgcctcacaatataacaaggatgcattgtcccatattgtttataccgacc
taattttataattagctgaagctaaaaaggaattcaagtttcttcacaga
gggaatggatatcacagaaaatgtggtacattttcacaatgaatgtataa
aacactgaattcatgaaattcttatgcaatgttagtgaaagttagtaaat
gacttcgtctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111728851_111730003
seq2: B6Ng01-250A23.b_43_1215

seq1  GAATTCACTTGATTAGAAATGGCTGACCAAGAAAATCTAAGAAAAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGATTAGAAATGGCTGACCAAGAAAATCTAAGAAAAATAAT  50

seq1  GCTTTTCTCAATGTACTTAACTCAATAATATTAGTAAATTTGCCTACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTCAATGTACTTAACTCAATAATATTAGTAAATTTGCCTACATT  100

seq1  TTATTATGTGGACACTTTAGGAGCGTATTTTTCAGGCTAGCACCACAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGTGGACACTTTAGGAGCGTATTTTTCAGGCTAGCACCACAGCT  150

seq1  AAGTATTTTGTTGTTGTTGTTGTTGTTGTTGAAGGTAAAAATAGAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTTGTTGTTGTTGTTGTTGTTGTTGAAGGTAAAAATAGAAATAT  200

seq1  AATAAAATCAGGATTTTTTGCATTTATTTTAGCAACAAAATTAATCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCAGGATTTTTTGCATTTATTTTAGCAACAAAATTAATCAATT  250

seq1  AATTTATGCTATGGAAGGGTAAGAAATGTTTTATTTATTTTAACCAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGCTATGGAAGGGTAAGAAATGTTTTATTTATTTTAACCAATGA  300

seq1  ACTTCTTAGAGAAAAATAAGTCCATAGATTTTGACATTATGTGCTAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTAGAGAAAAATAAGTCCATAGATTTTGACATTATGTGCTAGACA  350

seq1  TCTTCATATGCTTCCTGCTAGCATAAAGCTTTGAAAGAATCTAGAACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATATGCTTCCTGCTAGCATAAAGCTTTGAAAGAATCTAGAACTTT  400

seq1  TTATTGTAATATGGAAGGTCCATATATATTTACTATATTTATAGTCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTAATATGGAAGGTCCATATATATTTACTATATTTATAGTCTTAT  450

seq1  GAACTATATATTCAGCATGACTATATAAATCTTACTTCCAAATATCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATATATTCAGCATGACTATATAAATCTTACTTCCAAATATCAAGA  500

seq1  GAATTAATTAATTTATATCATACAAATATTGGTTTAAGTAATATGTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAATTAATTTATATCATACAAATATTGGTTTAAGTAATATGTGGCT  550

seq1  TAAAAATAGTAAGATTTCTTTTTTCCTCCAGTTTTCTCAGTTTCTTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGTAAGATTTCTTTTTTCCTCCAGTTTTCTCAGTTTCTTCATA  600

seq1  AAATTCATATTAATACCTAGAATTTAATTGCCTTATAAGCTTATTAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATATTAATACCTAGAATTTAATTGCCTTATAAGCTTATTAATAT  650

seq1  ATTTTTCATAATGAATTCTATATCAAGTACTACAGATACAGCATTTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCATAATGAATTCTATATCAAGTACTACAGATACAGCATTTCACA  700

seq1  GAGCTCATTATTGCTTACTTTACGTTCTTTCTTTGAGACGAATCTGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATTATTGCTTACTTTACGTTCTTTCTTTGAGACGAATCTGAGAT  750

seq1  TTCTTTGATATTTGATAAGAGAGAAGAAAACATAGAAGCAGCAAAACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGATATTTGATAAGAGAGAAGAAAACATAGAAGCAGCAAAACAAG  800

seq1  TGCCAACACCAATGTATAAAATATTGATTAAAATTATCAGATTCTAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACACCAATGTATAAAATATTGATTAAAATTATCAGATTCTAAATT  850

seq1  GTACAGAATTGAACAATATGAATGGTTTACAATTTGTGAAGATCTTGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAATTGAACAATATGAATGGTTTACAATTTGTGAAGATCTTGGTG  900

seq1  AGATTCATAAGTGTGATGATATGACTGGAGCATCACAGAATAATAAAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCATAAGTGTGATGATATGACTGGAGCATCACAGAATAATAAAACT  950

seq1  CCTGAGACC-TAAACTGAT-ATACATAACTGATCTTA-TTTTAAAATGCT  997
      ||||||||| ||||||||| | ||||||||||||||| ||||||||||||
seq2  CCTGAGACCTTAAACTGATAAAACATAACTGATCTTATTTTTAAAATGCT  1000

seq1  GCGGATTCTTTACAAT-ATAGGACCAAATAAATT-CTCTTATCATTTTTC  1045
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  GCGGATTCTTTACAATAATAGGACCAAATAAATTCCTCTTATCATTTTTC  1050

seq1  TAG-AGTG--AATACAGAATA-TGTCA-TGTTCTA--TCTAGAGAA--GC  1086
      ||| ||||  | ||||||| | ||||| |||||||  |||||||||   |
seq2  TAGAAGTGGAATTACAGAAAATTGTCATTGTTCTATTTCTAGAGAAAGCC  1100

seq1  TTTG-TTACG-CAAGATGCACTGTTCTATTTAAGT-CTTCCACATG-CTG  1132
      |||| ||||| || ||||||||| ||||| ||||| || ||||||| |||
seq2  TTTGTTTACGCCAGGATGCACTGGTCTATATAAGTCCTCCCACATGTCTG  1150

seq1  -TTCCAAGTAGTCAGGC-CTGGA  1153
       |||||||   |||||| |||||
seq2  TTTCCAAGATATCAGGCGCTGGA  1173


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