BAC Information

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BAC

Clone NameB6Ng01-250D19
Chromosome14 (Build37)
Map Location 12,809,001 - 12,976,365
singlet/doubletdoublet
Overlap genePtprg, LOC100042441
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream gene3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250D19.bB6Ng01-250D19.g
ACCGA057839GA057840
length1,1271,029
definitionB6Ng01-250D19.b B6Ng01-250D19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,809,001 - 12,810,131)(12,975,341 - 12,976,365)
sequence
gaattcactaaagtagaccaacctcttagatagagatcctcctgcttctg
cctccctcccaaatgctgcattaaaggggtgcatcaccactcctagacaa
caccttgattttattttcaacaaggtctgttactgtatgccaattacagt
gggttgtctagctgtctttgcgccaccatgctgggattcagtggtgagcc
acctcacctggctttaggctggaactccggctttaaagctcccacaggac
tcccacaggaacattttcctgaatgaactgtattccctgtccctgaagcc
cttgaactacacctcattgtctcttttgctttcaaaccttccattgttag
tttccagctatatcgtaaataaatccaaaaaaaaccctctccttaccttc
tgagatccgacatcaccagactcctgttccctctccccatctaagagtct
tctccactttgcctttttcagtggttgtctgagtgttctccgcctgccat
gttgctcgtggctggcatttctcccactcacagcatcgtgtgcgctctcc
tctcagccctgctgctttctttcctgttgcatgcttcctctgctataccc
atcactttctgaaattacttattgatttgtttacttgtttattaactccc
tccaatatctgtaccagctgcatgtatactttgggggacaagaggactgt
ctgtaggtttctgcatcttggtacccataaggtatcccatagcaggataa
gcaatagtacctgctaagaaaataacattttcttatcgtagcctctactg
gtaggctccctaatttggaaagcaggactctaattcctgagagtggaatt
ttttaattcattcatttaaaagatgtttaaagaaagcaaccctccctcca
acctgcctcgtatatgaaagatgagaagccccaaataaattagttattcc
ctagtaagcacattcatccacttgcctcctgcttcgaggtgggggctagt
cctgtagcccagaaagtgttcttttagaacctgttcttccagagcatgct
cttctataccaccatcacattctatgcatcagaacagattgtccaataag
tccgtgaaggtccagggttttgagagc
gaattcactccatgccagtgtctctttatctctgcatatttaattatttt
ccacttagaacaagaaacagaagaagcgcctagatggtttctgctgatta
atgtgagctcaactcagggagagacccctgatggacttccactgagaaag
agaaaggttcaaacacaccgtaaccttgggtgcctttcaatgcagccttc
tctcctttcatgaaggcctctgctccctaatgtgacccagataacaatgt
ctagtgggggaattgaaaatataaatggaaatgaagtaaaggaatcctca
tctaaaggaatatgaaaagtattattctataactgattgaatgggccctg
aggactttctattgggagagaaaaaagtggtaagtcattaagaggcgcac
tcagagccgaaacatttttcatgtgcatatacaattacaggcttcattat
tccggggcctcctttgattaacaataaagcatcgaggctttcaaacccaa
atgtgtcacttggagtttctgtgtaaagtcttaaagcctagtgcttgtgg
gaggtttacgatgataagggaagaagaatgcttctacatgtactactcaa
agggctgggctgagggtctgatgatagatacttacatatattttaaacag
aaatgttggcctggggtctgtgtggtcaccaaaaggtagagactgagggc
agatatgtcatggcatctacaacagctcaggactctagccctggcccctg
gagtctagcagcaatgtttactgtcatgtgagacaaggggtggtggggac
tgtggacagcagcaggcatagttgtggcaggaaatatgaggaggtagcag
cagaggtgaggtacgtgtaagagataacacacagtgttccctagctgtgt
gacccttccattacattagatcttacataacatatagtactataacaacc
tcatcaaaagaaaggggccttgtttgcaatgaattgaaagaggaaaaatc
tgtggtgtatgcgttgcatgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12809001_12810131
seq2: B6Ng01-250D19.b_44_1170

seq1  GAATTCACTAAAGTAGACCAACCTCTTAGATAGAGATCCTCCTGCTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAAGTAGACCAACCTCTTAGATAGAGATCCTCCTGCTTCTG  50

seq1  CCTCCCTCCCAAATGCTGCATTAAAGGGGTGCATCACCACTCCTAGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCAAATGCTGCATTAAAGGGGTGCATCACCACTCCTAGACAA  100

seq1  CACCTTGATTTTATTTTCAACAAGGTCTGTTACTGTATGCCAATTACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGATTTTATTTTCAACAAGGTCTGTTACTGTATGCCAATTACAGT  150

seq1  GGGTTGTCTAGCTGTCTTTGCGCCACCATGCTGGGATTCAGTGGTGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTCTAGCTGTCTTTGCGCCACCATGCTGGGATTCAGTGGTGAGCC  200

seq1  ACCTCACCTGGCTTTAGGCTGGAACTCCGGCTTTAAAGCTCCCACAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACCTGGCTTTAGGCTGGAACTCCGGCTTTAAAGCTCCCACAGGAC  250

seq1  TCCCACAGGAACATTTTCCTGAATGAACTGTATTCCCTGTCCCTGAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGGAACATTTTCCTGAATGAACTGTATTCCCTGTCCCTGAAGCC  300

seq1  CTTGAACTACACCTCATTGTCTCTTTTGCTTTCAAACCTTCCATTGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTACACCTCATTGTCTCTTTTGCTTTCAAACCTTCCATTGTTAG  350

seq1  TTTCCAGCTATATCGTAAATAAATCCAAAAAAAACCCTCTCCTTACCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCTATATCGTAAATAAATCCAAAAAAAACCCTCTCCTTACCTTC  400

seq1  TGAGATCCGACATCACCAGACTCCTGTTCCCTCTCCCCATCTAAGAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCCGACATCACCAGACTCCTGTTCCCTCTCCCCATCTAAGAGTCT  450

seq1  TCTCCACTTTGCCTTTTTCAGTGGTTGTCTGAGTGTTCTCCGCCTGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTTTGCCTTTTTCAGTGGTTGTCTGAGTGTTCTCCGCCTGCCAT  500

seq1  GTTGCTCGTGGCTGGCATTTCTCCCACTCACAGCATCGTGTGCGCTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCGTGGCTGGCATTTCTCCCACTCACAGCATCGTGTGCGCTCTCC  550

seq1  TCTCAGCCCTGCTGCTTTCTTTCCTGTTGCATGCTTCCTCTGCTATACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCCTGCTGCTTTCTTTCCTGTTGCATGCTTCCTCTGCTATACCC  600

seq1  ATCACTTTCTGAAATTACTTATTGATTTGTTTACTTGTTTATTAACTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTCTGAAATTACTTATTGATTTGTTTACTTGTTTATTAACTCCC  650

seq1  TCCAATATCTGTACCAGCTGCATGTATACTTTGGGGGACAAGAGGACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATCTGTACCAGCTGCATGTATACTTTGGGGGACAAGAGGACTGT  700

seq1  CTGTAGGTTTCTGCATCTTGGTACCCATAAGGTATCCCATAGCAGGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGTTTCTGCATCTTGGTACCCATAAGGTATCCCATAGCAGGATAA  750

seq1  GCAATAGTACCTGCTAAGAAAATAACATTTTCTTATCGTAGCCTCTACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGTACCTGCTAAGAAAATAACATTTTCTTATCGTAGCCTCTACTG  800

seq1  GTAGGCTCCCTAATTTGGAAAGCAGGACTCTAATTCCTGAGAGTGGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTCCCTAATTTGGAAAGCAGGACTCTAATTCCTGAGAGTGGAATT  850

seq1  TTTTAATTCATTCATTTAAAAGATGTTTAAAGAAGCAAACCCTCCCTCCA  900
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  TTTTAATTCATTCATTTAAAAGATGTTTAAAGAAAGCAACCCTCCCTCCA  900

seq1  ACCTGCCTCGTATATGAAAGATGAGAAAGCCCCAAATAAATTAGTTATTC  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACCTGCCTCGTATATGAAAGATGAG-AAGCCCCAAATAAATTAGTTATTC  949

seq1  CCTAGTAAGCACATTCATCCACTTGCCTCCTGCTTCGAGGTGGGGGCTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTAAGCACATTCATCCACTTGCCTCCTGCTTCGAGGTGGGGGCTAG  999

seq1  TCCTGTAGCCCAGAAAGTGTTCTTTTAGAAACCTGTTCTTCCAGAGCATG  1050
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  TCCTGTAGCCCAGAAAGTGTTCTTTTAG-AACCTGTTCTTCCAGAGCAT-  1047

seq1  GCTCTTCTATTAACCACCATCACA-TCTATGCATCAAGACAGATTGTTCC  1099
      ||||||||||  |||||||||||| |||||||||||  |||||||| |||
seq2  GCTCTTCTAT--ACCACCATCACATTCTATGCATCAGAACAGATTG-TCC  1094

seq1  AATTAGTCGGTG-AGGTCCAGGTTTTTGAGAGC  1131
      ||| |||| ||| ||||||||| ||||||||||
seq2  AATAAGTCCGTGAAGGTCCAGGGTTTTGAGAGC  1127

seq1: chr14_12975341_12976365
seq2: B6Ng01-250D19.g_66_1094 (reverse)

seq1  CCCCCCCCCCATGC-ACGCATACA-CACAGATTTTT-CTCTTTCAATTCA  47
      |||||||||||||| ||||||||| ||||||||||| |||||||||||||
seq2  CCCCCCCCCCATGCAACGCATACACCACAGATTTTTCCTCTTTCAATTCA  50

seq1  TTGCAAACAA-GCCCCTTTCTTTTGATGAGGTTGTTATAGTACTATATGT  96
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACAAGGCCCCTTTCTTTTGATGAGGTTGTTATAGTACTATATGT  100

seq1  TATGTAAGATCTAATGTAATGGAA-GGTCACACAGCTAGGGAACACTGTG  145
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATGTAAGATCTAATGTAATGGAAGGGTCACACAGCTAGGGAACACTGTG  150

seq1  TGTTATCTCTTACACGTACCTCACCTCTGCTGCTACCTCCTCATATTTCC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTCTTACACGTACCTCACCTCTGCTGCTACCTCCTCATATTTCC  200

seq1  TGCCACAACTATGCCTGCTGCTGTCCACAGTCCCCACCACCCCTTGTCTC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAACTATGCCTGCTGCTGTCCACAGTCCCCACCACCCCTTGTCTC  250

seq1  ACATGACAGTAAACATTGCCTGCTAGACTCCAGGGGCCAGGGCTAGAGTC  295
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACATGACAGTAAACATTG-CTGCTAGACTCCAGGGGCCAGGGCTAGAGTC  299

seq1  CTGAGCTGTTGTAGATGCCATGACATATCTGCCCTCAGTCTCTACCTTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGTTGTAGATGCCATGACATATCTGCCCTCAGTCTCTACCTTTT  349

seq1  GGTGACCACACAGACCCCAGGCCAACATTTCTGTTTAAAATATATGTAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCACACAGACCCCAGGCCAACATTTCTGTTTAAAATATATGTAAG  399

seq1  TATCTATCATCAGACCCTCAGCCCAGCCCTTTGAGTAGTACATGTAGAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCATCAGACCCTCAGCCCAGCCCTTTGAGTAGTACATGTAGAAG  449

seq1  CATTCTTCTTCCCTTATCATCGTAAACCTCCCACAAGCACTAGGCTTTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCTTCCCTTATCATCGTAAACCTCCCACAAGCACTAGGCTTTAA  499

seq1  GACTTTACACAGAAACTCCAAGTGACACATTTGGGTTTGAAAGCCTCGAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTACACAGAAACTCCAAGTGACACATTTGGGTTTGAAAGCCTCGAT  549

seq1  GCTTTATTGTTAATCAAAGGAGGCCCCGGAATAATGAAGCCTGTAATTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTGTTAATCAAAGGAGGCCCCGGAATAATGAAGCCTGTAATTGT  599

seq1  ATATGCACATGAAAAATGTTTCGGCTCTGAGTGCGCCTCTTAATGACTTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACATGAAAAATGTTTCGGCTCTGAGTGCGCCTCTTAATGACTTA  649

seq1  CCACTTTTTTCTCTCCCAATAGAAAGTCCTCAGGGCCCATTCAATCAGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTTTTCTCTCCCAATAGAAAGTCCTCAGGGCCCATTCAATCAGTT  699

seq1  ATAGAATAATACTTTTCATATTCCTTTAGATGAGGATTCCTTTACTTCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATAATACTTTTCATATTCCTTTAGATGAGGATTCCTTTACTTCAT  749

seq1  TTCCATTTATATTTTCAATTCCCCCACTAGACATTGTTATCTGGGTCACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTATATTTTCAATTCCCCCACTAGACATTGTTATCTGGGTCACA  799

seq1  TTAGGGAGCAGAGGCCTTCATGAAAGGAGAGAAGGCTGCATTGAAAGGCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAGCAGAGGCCTTCATGAAAGGAGAGAAGGCTGCATTGAAAGGCA  849

seq1  CCCAAGGTTACGGTGTGTTTGAACCTTTCTCTTTCTCAGTGGAAGTCCAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGTTACGGTGTGTTTGAACCTTTCTCTTTCTCAGTGGAAGTCCAT  899

seq1  CAGGGGTCTCTCCCTGAGTTGAGCTCACATTAATCAGCAGAAACCATCTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTCTCTCCCTGAGTTGAGCTCACATTAATCAGCAGAAACCATCTA  949

seq1  GGCGCTTCTTCTGTTTCTTGTTCTAAGTGGAAAATAATTAAATATGCAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTTCTTCTGTTTCTTGTTCTAAGTGGAAAATAATTAAATATGCAGA  999

seq1  GATAAAGAGACACTGGCATGGAGTGAATTC  1025
      ||||||||||||||||||||||||||||||
seq2  GATAAAGAGACACTGGCATGGAGTGAATTC  1029