BAC Information

Click to search

BAC

Clone NameB6Ng01-250E06
Chromosome14 (Build37)
Map Location 60,661,465 - 60,837,611
singlet/doubletdoublet
Overlap geneAtp8a2, LOC628768
Upstream gene1700129C05Rik, EG380907, Rcbtb1, EG628693, Phf11, EG236451, D14Ertd668e, EG628705, Setdb2, Cab39l, Cdadc1, Tmem46, LOC668162
Downstream geneNupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19, Sacs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250E06.bB6Ng01-250E06.g
ACCGA057857GA057858
length1,1611,173
definitionB6Ng01-250E06.b B6Ng01-250E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,661,465 - 60,662,644)(60,836,471 - 60,837,611)
sequence
gaattcactgcagcctcagaaggagcctcctgtctctcaactgtaaaaca
gctaaaggactctcagaatttatcccaataattgaggtctacctctctga
gatcaccagagccaagcaaagctcagggtctctgtctcaaatgtaatact
ctcgcatgagttcagctgggtgtggctctcaaggacacctacgtgttcct
tccctacgctctgtcttgaacaacatctttttctcaaaccctaccaaggt
ccccagattcactgttccgcagtgaactgcccatatcaccagcagaagcc
gttcctgtgaacttgtcaaaatgtaaacttaagactctgattcaggaatt
ctgggaagaggactggtgtgtgattgaccagtgttggttgccaaggatac
ccgatttgattgagaggacaactgcataagaagattcgatcacaaattcc
atggttggtagtctctagcatctgctaactggcctgcttaagatggctca
ccacaatgcattgaaaatggaaatcgaagtgtattgaaccagggcctata
ctgtggtggtgataccccaagcacatgtgggaacaggaaggaattctggg
agtctgtaagactaccagctcttgaactcagaaatcagtgactccgtgtc
ccaccacattgagtggcgtcaagccacttctggtgcctttctgaagagca
ggcagccagaagacccctggaaagatggagggtctatgaggattctccag
ctcccactgcgcagtgccagttctctcctgggaattccgccttttgacca
agaaccatcacactgaacttttaaagttcagaaaggccagtgaggcctca
agggttatagtggcctacaaaacactacaaagagaagttttctttaaagg
cttgatggttctcctagatggggtaaaatcgaataaaaaaccatagtgag
tgctataggcacactggcaacatccccacctctccccgtgacccatcccc
cacagaaagggctacgtgaggcaatgctatacgcatatttttagaaaaaa
caatacttgagttgctctctaaaatattttttttcttttcaaaagtcagt
ttgactgcagattgatgatgtgtccttaattcaatcggtggctgtcaaca
aggtccagcta
gaattcattgccttaggaccgtgacagcgtgaaagtagttttcaggtgga
atgaacacatggaattgcacggaaatagtttaatttttttacatagaagg
ttttgtatataatgtttatcagtgaatactttcaggatcattttcactaa
ggcaccttttttttattttattcaaaacaggtctggtgtacatacatacg
aacatacatacatacatattttagtataatgttacttgggtttgattata
aaaattgttggtctgttttatttatctgcatataacagtgattggcattc
ctgaatttaatatttgcatcttgacgcattaaaataaggagagttatttg
tctctgagcactaaacatttgtatatttttgtaattctgcaaccctcagt
ccagactatgggggaggataggaaaaaggtgtgctttggcattttaaatt
accatcagagttacatatacaattacaaaaatactgctttgttcgttttt
taagtacattgtattatgctgcaaatatctgaatatttatatttctctgg
gttatttttttctttatatacattttcatatgttgaaccactggagactt
gtagcattcatttgtggtaggagtcagagtgttgtctttgtctcctttgt
cttcgccttgtctattgtggaaataataaaatttgttagttgctttgaat
ctttgtaggtctcagcagttgtacatacttaattttattactgcttctta
ttctctttaattgattttagtgttgtctacacttgtaagttatagtcttg
ttctcttttgttttttaacaaaagctaaagacaatgtagcaaattcttga
cttggacaggtggcccagttattaacatgctttgttatgctgataaagtg
agttaaatgctgggatgggtgtgggttgcccctccctgattccaggtggg
ccaggagtcagagaagggaatccccagagctagctgctttagagagacta
gccacacccaaccagctcagggttttgaccaagagaatccctggccttat
ggaataatggtggaagaggcattcaagaatggagtcctcagcacgggcgt
ggtgggcgcacgctctttattctcgatcagtcatgtaaggcagaagtcga
ggcgggtattttctgagtttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_60661465_60662644
seq2: B6Ng01-250E06.b_44_1204

seq1  GAATTCACTGCAGCCTCAGAAGGAGCCTCCTGTCTCTCAACTGTAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCAGCCTCAGAAGGAGCCTCCTGTCTCTCAACTGTAAAACA  50

seq1  GCTAAAGGACTCTCAGAATTTATCCCAATAATTGAGGTCTACCTCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGGACTCTCAGAATTTATCCCAATAATTGAGGTCTACCTCTCTGA  100

seq1  GATCACCAGAGCCAAGCAAAGCTCAGGGTCTCTGTCTCAAATGTAATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCAGAGCCAAGCAAAGCTCAGGGTCTCTGTCTCAAATGTAATACT  150

seq1  CTCGCATGAGTTCAGCTGGGTGTGGCTCTCAAGGACACCTACGTGTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCATGAGTTCAGCTGGGTGTGGCTCTCAAGGACACCTACGTGTTCCT  200

seq1  TCCCTACGCTCTGTCTTGAACAACATCTTTTTCTCAAACCCTACCAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACGCTCTGTCTTGAACAACATCTTTTTCTCAAACCCTACCAAGGT  250

seq1  CCCCAGATTCACTGTTCCGCAGTGAACTGCCCATATCACCAGCAGAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGATTCACTGTTCCGCAGTGAACTGCCCATATCACCAGCAGAAGCC  300

seq1  GTTCCTGTGAACTTGTCAAAATGTAAACTTAAGACTCTGATTCAGGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTGAACTTGTCAAAATGTAAACTTAAGACTCTGATTCAGGAATT  350

seq1  CTGGGAAGAGGACTGGTGTGTGATTGACCAGTGTTGGTTGCCAAGGATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGAGGACTGGTGTGTGATTGACCAGTGTTGGTTGCCAAGGATAC  400

seq1  CCGATTTGATTGAGAGGACAACTGCATAAGAAGATTCGATCACAAATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATTTGATTGAGAGGACAACTGCATAAGAAGATTCGATCACAAATTCC  450

seq1  ATGGTTGGTAGTCTCTAGCATCTGCTAACTGGCCTGCTTAAGATGGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGGTAGTCTCTAGCATCTGCTAACTGGCCTGCTTAAGATGGCTCA  500

seq1  CCACAATGCATTGAAAATGGAAATCGAAGTGTATTGAACCAGGGCCTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATGCATTGAAAATGGAAATCGAAGTGTATTGAACCAGGGCCTATA  550

seq1  CTGTGGTGGTGATACCCCAAGCACATGTGGGAACAGGAAGGAATTCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGGTGATACCCCAAGCACATGTGGGAACAGGAAGGAATTCTGGG  600

seq1  AGTCTGTAAGACTACCAGCTCTTGAACTCAGAAATCAGTGACTCCGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTAAGACTACCAGCTCTTGAACTCAGAAATCAGTGACTCCGTGTC  650

seq1  CCACCACATTGAGTGGCGTCAAGCCACTTCTGGTGCCTTTCTGAAGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACATTGAGTGGCGTCAAGCCACTTCTGGTGCCTTTCTGAAGAGCA  700

seq1  GGCAGCCAGAAGACCCCTGGAAAGATGGAGGGTCTATGAGGATTCTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCAGAAGACCCCTGGAAAGATGGAGGGTCTATGAGGATTCTCCAG  750

seq1  CTCCCACTGCGCAGGTGCCAGTTCTCTCCTGGGAATTCCGCCTTTTGACC  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTGCGCA-GTGCCAGTTCTCTCCTGGGAATTCCGCCTTTTGACC  799

seq1  AAGAACCATCACACTGAACTTTTAAAGTTCAG-AAGGCCAGTGAGGCCTC  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGAACCATCACACTGAACTTTTAAAGTTCAGAAAGGCCAGTGAGGCCTC  849

seq1  AAGGGTTATAGTGGCCTACAAAACACTACAAAGAGAAGTTTTCTTTAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTATAGTGGCCTACAAAACACTACAAAGAGAAGTTTTCTTTAAAG  899

seq1  GCTTGATGGTTCTCCTAGATGGGGTAAAATCGAATAAAAAACCATAGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATGGTTCTCCTAGATGGGGTAAAATCGAATAAAAAACCATAGTGA  949

seq1  GTGCTATAGGCACACTGGCAACATCCCCACCTCTCCCCGTGACCCATCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGCTATAGGCACACTGGCAACATCCCCACCTCTCCCCGTGACCCAT-CC  998

seq1  CCCACAGAAAGGGCTACGTGAGGCATTGGCTATAACGCATATTTTTAAGG  1049
      ||||||||||||||||||||||||| | ||||| |||||||||||||  |
seq2  CCCACAGAAAGGGCTACGTGAGGCAAT-GCTAT-ACGCATATTTTTA--G  1044

seq1  AAAAAACAATACTTGAAGTTGCTCTTCTAAAATATATTTTTTTTCTTTTC  1099
      ||||||||||||||| |||||||| ||||||  |||||||||||||||||
seq2  AAAAAACAATACTTG-AGTTGCTC-TCTAAA--ATATTTTTTTTCTTTTC  1090

seq1  CAAAAAGTCAGTTTTGACTGCCAGAATGATGAATGGTGTCTTTAAAATCA  1149
        ||||||||| |||||||| |||| ||||||   ||||| || || |||
seq2  --AAAAGTCAG-TTTGACTG-CAGATTGATGA--TGTGTCCTT-AATTCA  1133

seq1  ATACCGTGTGGCTGTCAACAAGGCCCAGCTA  1180
      ||  || |||||||||||||||| |||||||
seq2  AT--CG-GTGGCTGTCAACAAGGTCCAGCTA  1161

seq1: chr14_60836471_60837611
seq2: B6Ng01-250E06.g_69_1241 (reverse)

seq1  CTCAAACTCAGAA---ATCCGCCT--GCCTCTGCCT--CCTGACTGCT-G  42
      |||||||||||||   | ||||||   | |||||||  | |||||| | |
seq2  CTCAAACTCAGAAAATACCCGCCTCGACTTCTGCCTTACATGACTGATCG  50

seq1  GGATTAAAG-GCGTGCG-CCACCACGCCTG-GCTGA-GACT-CATTCTTG  87
       || ||||| ||||||| |||||||||| | ||||| |||| ||||||||
seq2  AGAATAAAGAGCGTGCGCCCACCACGCCCGTGCTGAGGACTCCATTCTTG  100

seq1  AATG-CTCTTCCACCA-TATTCATTAAGG-CAGGG-TTCTCTTGGTC-AA  132
      |||| ||||||||||| |||||  ||||| ||||| ||||||||||| ||
seq2  AATGCCTCTTCCACCATTATTCCATAAGGCCAGGGATTCTCTTGGTCAAA  150

seq1  ACCTGGAGCTTGCT-GGTGTGGCTAGTCTCTCT-AAGCAGCTAGCTCT-G  179
      |||  ||||| | | |||||||||||||||||| |||||||||||||| |
seq2  ACCCTGAGCTGGTTGGGTGTGGCTAGTCTCTCTAAAGCAGCTAGCTCTGG  200

seq1  GGAATCCCTTCTCTGACT-CTGGCC--ACTGGAATCAGG--AGGGCAA-C  223
      ||| |||||||||||||| ||||||   |||||||||||   |||||| |
seq2  GGATTCCCTTCTCTGACTCCTGGCCCACCTGGAATCAGGGAGGGGCAACC  250

seq1  CACACCCAT-CCAGCATTT-ACTCACTTTATCAGCATAAC-AAGCATGTT  270
      ||||||||| ||||||||| |||||||||||||||||||| |||||||||
seq2  CACACCCATCCCAGCATTTAACTCACTTTATCAGCATAACAAAGCATGTT  300

seq1  AATAACTGGGCCACCTGTCC-AGTC-AGAATTTGCTACATTGTCTTTAGC  318
      |||||||||||||||||||| |||| ||||||||||||||||||||||| 
seq2  AATAACTGGGCCACCTGTCCAAGTCAAGAATTTGCTACATTGTCTTTAG-  349

seq1  CTTTTGTT-AAAAACAAAAGAGAACAAGACTATAACTTACAAGTGTAGAC  367
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTAAAAAACAAAAGAGAACAAGACTATAACTTACAAGTGTAGAC  399

seq1  AACACTAAAATCAATTAAAGAGAATAAGAAGCAGTAATAAAATTAAGTAT  417
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAAAATCAATTAAAGAGAATAAGAAGCAGTAATAAAATTAAGTAT  449

seq1  GTACAACTGCTGAGACCTACAAAGATTCAAAGCAACTAACAAATTTTATT  467
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAACTGCTGAGACCTACAAAGATTCAAAGCAACTAACAAATTTTATT  499

seq1  ATTTCCACAATAGACAAGGCGAAGACAAAGGAGACAAAGACAACACTCTG  517
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACAATAGACAAGGCGAAGACAAAGGAGACAAAGACAACACTCTG  549

seq1  ACTCCTACCACAAATGAATGCTACAAGTCTCCAGTGGTTCAACATATGAA  567
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTACCACAAATGAATGCTACAAGTCTCCAGTGGTTCAACATATGAA  599

seq1  AATGTATATAAAGAAAAAAATAACCCAGAGAAATATAAATATTCAGATAT  617
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATATAAAGAAAAAAATAACCCAGAGAAATATAAATATTCAGATAT  649

seq1  TTGCAGCATAATACAATGTACTTAAAAAACGAACAAAGCAGTATTTTTGT  667
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCATAATACAATGTACTTAAAAAACGAACAAAGCAGTATTTTTGT  699

seq1  AATTGTATATGTAACTCTGATGGTAATTTAAAATGCCAAAGCACACCTTT  717
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATATGTAACTCTGATGGTAATTTAAAATGCCAAAGCACACCTTT  749

seq1  TTCCTATCCTCCCCCATAGTCTGGACTGAGGGTTGCAGAATTACAAAAAT  767
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATCCTCCCCCATAGTCTGGACTGAGGGTTGCAGAATTACAAAAAT  799

seq1  ATACAAATGTTTAGTGCTCAGAGACAAATAACTCTCCTTATTTTAATGCG  817
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATGTTTAGTGCTCAGAGACAAATAACTCTCCTTATTTTAATGCG  849

seq1  TCAAGATGCAAATATTAAATTCAGGAATGCCAATCACTGTTATATGCAGA  867
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATGCAAATATTAAATTCAGGAATGCCAATCACTGTTATATGCAGA  899

seq1  TAAATAAAACAGACCAACAATTTTTATAATCAAACCCAAGTAACATTATA  917
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAACAGACCAACAATTTTTATAATCAAACCCAAGTAACATTATA  949

seq1  CTAAAATATGTATGTATGTATGTTCGTATGTATGTACACCAGACCTGTTT  967
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATATGTATGTATGTATGTTCGTATGTATGTACACCAGACCTGTTT  999

seq1  TGAATAAAATAAAAAAAAGGTGCCTTAGTGAAAATGATCCTGAAAGTATT  1017
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAATAAAAAAAAGGTGCCTTAGTGAAAATGATCCTGAAAGTATT  1049

seq1  CACTGATAAACATTATATACAAAACCTTCTATGTAAAAAAATTAAACTAT  1067
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATAAACATTATATACAAAACCTTCTATGTAAAAAAATTAAACTAT  1099

seq1  TTCCGTGCAATTCCATGTGTTCATTCCACCTGAAAACTACTTTCACGCTG  1117
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTGCAATTCCATGTGTTCATTCCACCTGAAAACTACTTTCACGCTG  1149

seq1  TCACGGTCCTAAGGCAATGAATTC  1141
      ||||||||||||||||||||||||
seq2  TCACGGTCCTAAGGCAATGAATTC  1173