BAC Information

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BAC

Clone NameB6Ng01-250I09
Chromosome7 (Build37)14 (Build37)
Map Location 79,763,441 - 79,763,654102,979,645 - 102,980,815
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665535, Mctp2, LOC100042873
Downstream geneLOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250I09.bB6Ng01-250I09.g
ACCGA058043GA058044
length5161,167
definitionB6Ng01-250I09.b B6Ng01-250I09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,763,441 - 79,763,654)(102,979,645 - 102,980,815)
sequence
gaattctagactggaagaacagtttgagaaaaaggtggagatgataatgt
tcttgtcctgttgggcaataacgatcagtctagagagtccaaagagaaaa
ggtgaagcaaagaaataagtggatattagcccaaaacctaggatacccaa
gatataagatacaatttgctaaacacatgaaactcaagaagaatgaagac
tgaagtgtggacactatgcccctccttagaagtgggaacaaaacacccat
ggaaggagttacagagacaaagtttggagcttagacgaaaggatggacca
tctagagactgccatatccagggatccaccccataatcagcttccaaacg
ctgacaccattgcatacactagcaagattttgttgaaaggacccagatgt
agctgtctcttgtgagactatgccggggcctagcaaacacagaagtggat
gctcacagtcagctgttggatggatcacagggctcccaatggaggagcta
gagaaagtacccaagg

gaattcaaacacctgcaacaaaaggaactcaaagtcttcataccttatca
tgtgtgtttaattaaactccaaagcagagtctgcaaacaggtgtgtactt
ctctagtggagattctccaaggggctcgagcacacatttgtgagtttcaa
gaaatgaaacatcttctgtagagctaggacttcagatcagcaagtgaaaa
gcatgatgtttttgaggtgcatttcctcagctgtttattcttctagcaaa
gcttatttatggtgttaccgcgaagtaacaaattaaaatggcttatagct
ctataatactgccatttaaaaggctgtcattatgaacaaatcagaacctt
gcagcctgcaggaacagagcagtataaataaatgatgaccatctctaaaa
agtgagctgaggtaaagaattaggagaatggcacacatttaattagggag
ctctaccattattggaataaggacattcttcccatgtaggatggcaagtc
ccattgtatccacagatccctagaggcctcagctctccctttggcatcca
gatccagcatcacaacatcctacactgcagctccttgggcgctgggcagc
cctagtgagctgctaagtgcatttgctgtgcaagggaaacctctttgttg
tctcatcctcgcagtgtttacatacaaagagatgactactgtcagctgcc
tcagttttccatacacttggctgtgaacaagtgccagatgacatatttat
tgattaaactcttacctgtggtgtttattttcaaatgatttgagagaact
ggaaacagtagaattgttcaaacgatcagatatgacatcaatgatttact
gcaacgcttctgtgactgtgacagaaacaggctcaaggttttcctactgt
tttgatttaaggtaatcactgcttttgttggtttgagcagttggtcttga
gaagattttaattcttccccttctccctctcttttcttgttgtcacgctt
gtgaaatggatgagaacacttttcaacagattttttctgataattctaca
atacgaaacaacattttttatacattccttagctgcagatatacaataga
cacctgccttcatttctgttcctatgcccaggtgatcgaaccagatttat
gatcgttctgtgagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_79763441_79763654
seq2: B6Ng01-250I09.b_349_562

seq1  TAGAGACTGCCATATCCAGGGATCCATCCCATAATCAGCCTCCAAACGCT  50
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  TAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCTTCCAAACGCT  50

seq1  GACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGATATAG  100
      |||||||||||||||||||||||||||||| ||||||||||| ||| |||
seq2  GACACCATTGCATACACTAGCAAGATTTTGTTGAAAGGACCCAGATGTAG  100

seq1  CTGTCTCTTGTGAAACTAGGCCGGGGCCTAGCAAACACAGAAATGGATGC  150
      ||||||||||||| |||| ||||||||||||||||||||||| |||||||
seq2  CTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGC  150

seq1  TCACAGTCAGCTATTGGATGGCTCACAGGGCCCCCAATGTAGGAGCTAGA  200
      |||||||||||| |||||||| ||||||||| ||||||| ||||||||||
seq2  TCACAGTCAGCTGTTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGA  200

seq1  GAAAATACCCAAGG  214
      |||| |||||||||
seq2  GAAAGTACCCAAGG  214


seq1: chr14_102979645_102980815
seq2: B6Ng01-250I09.g_70_1236

seq1  GAATTCAAACACCTGCAACAAAAGGAACTCAAAGTCTTCATACCTTATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACACCTGCAACAAAAGGAACTCAAAGTCTTCATACCTTATCA  50

seq1  TGTGTGTTTAATTAAACTCCAAAGCAGAGTCTGCAAACAGGTGTGTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTAATTAAACTCCAAAGCAGAGTCTGCAAACAGGTGTGTACTT  100

seq1  CTCTAGTGGAGATTCTCCAAGGGGCTCGAGCACACATTTGTGAGTTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTGGAGATTCTCCAAGGGGCTCGAGCACACATTTGTGAGTTTCAA  150

seq1  GAAATGAAACATCTTCTGTAGAGCTAGGACTTCAGATCAGCAAGTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAACATCTTCTGTAGAGCTAGGACTTCAGATCAGCAAGTGAAAA  200

seq1  GCATGATGTTTTTGAGGTGCATTTCCTCAGCTGTTTATTCTTCTAGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATGTTTTTGAGGTGCATTTCCTCAGCTGTTTATTCTTCTAGCAAA  250

seq1  GCTTATTTATGGTGTTACCGCGAAGTAACAAATTAAAATGGCTTATAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTATGGTGTTACCGCGAAGTAACAAATTAAAATGGCTTATAGCT  300

seq1  CTATAATACTGCCATTTAAAAGGCTGTCATTATGAACAAATCAGAACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATACTGCCATTTAAAAGGCTGTCATTATGAACAAATCAGAACCTT  350

seq1  GCAGCCTGCAGGAACAGAGCAGTATAAATAAATGATGACCATCTCTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGCAGGAACAGAGCAGTATAAATAAATGATGACCATCTCTAAAA  400

seq1  AGTGAGCTGAGGTAAAGAATTAGGAGAATGGCACACATTTAATTAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTGAGGTAAAGAATTAGGAGAATGGCACACATTTAATTAGGGAG  450

seq1  CTCTACCATTATTGGAATAAGGACATTCTTCCCATGTAGGATGGCAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCATTATTGGAATAAGGACATTCTTCCCATGTAGGATGGCAAGTC  500

seq1  CCATTGTATCCACAGATCCCTAGAGGCCTCAGCTCTCCCTTTGGCATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTATCCACAGATCCCTAGAGGCCTCAGCTCTCCCTTTGGCATCCA  550

seq1  GATCCAGCATCACAACATCCTACACTGCAGCTCCTTGGGCGCTGGGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGCATCACAACATCCTACACTGCAGCTCCTTGGGCGCTGGGCAGC  600

seq1  CCTAGTGAGCTGCTAAGTGCATTTGCTGTGCAAGGGAAACCTCTTTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGAGCTGCTAAGTGCATTTGCTGTGCAAGGGAAACCTCTTTGTTG  650

seq1  TCTCATCCTCGCAGTGTTTACATACAAAGAGATGACTACTGTCAGCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCTCGCAGTGTTTACATACAAAGAGATGACTACTGTCAGCTGCC  700

seq1  TCAGTTTTCCATACACTTGGCTGTGAACAAGTGCCAGATGACATATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTCCATACACTTGGCTGTGAACAAGTGCCAGATGACATATTTAT  750

seq1  TGATT-AACTCTTACCTGTGGTGTTTATTTTCAAATGATTTGAGAGAACT  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAACTCTTACCTGTGGTGTTTATTTTCAAATGATTTGAGAGAACT  800

seq1  GGAAACAGTAGAATTGTTCAAACGATCAGATATGACATCAATGATTTACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAGTAGAATTGTTCAAACGATCAGATATGACATCAATGATTTACT  850

seq1  GCAACGCTTCTGTGACTGTGACAGAAACAGGCTCAAAGGTTTTCCTACTG  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCAACGCTTCTGTGACTGTGACAGAAACAGGCTC-AAGGTTTTCCTACTG  899

seq1  TTTTGATTTAAGGTAATCACTGCTTTTGTTGGTTTGAGCAGTTGGTCTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTAAGGTAATCACTGCTTTTGTTGGTTTGAGCAGTTGGTCTTG  949

seq1  AG-AGATTTTAATTCTTCCCCTTCTCCCTCTCTTTTCCTGTTGTCACGCT  998
      || |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAGATTTTAATTCTTCCCCTTCTCCCTCTCTTTTCTTGTTGTCACGCT  999

seq1  TGTGAAAT-GATGAG-ACACTTTTC-ACAGATTTTTCTGGATAAATTCTA  1045
      |||||||| |||||| ||||||||| ||||||||||   ||| |||||||
seq2  TGTGAAATGGATGAGAACACTTTTCAACAGATTTTTTCTGAT-AATTCTA  1048

seq1  CAAATACGAAACAACAATTTTAATACATTCCCTTAGCTGCAGGATATACA  1095
      | |||||||||||||| |||| ||||||| ||||||||||| ||||||| 
seq2  C-AATACGAAACAACATTTTTTATACATT-CCTTAGCTGCA-GATATAC-  1094

seq1  AATAGACA-CTGCCTTCATTTTCTGTTCTTATG-CCAAGTGATCAAAACC  1143
      |||||||| ||||||||| ||||||||| |||| ||| ||||||  ||||
seq2  AATAGACACCTGCCTTCA-TTTCTGTTCCTATGCCCAGGTGATC-GAACC  1142

seq1  AGTATTTTAATGATGGGTCTGTGAGTAG  1171
      || ||||  ||||| | |||||||||||
seq2  AG-ATTT--ATGATCGTTCTGTGAGTAG  1167


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