BAC Information

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BAC

Clone NameB6Ng01-253K04
Chromosome14 (Build37)
Map Location 89,533,162 - 89,672,151
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253K04.bB6Ng01-253K04.g
ACCGA060314GA060315
length1,1581,089
definitionB6Ng01-253K04.b B6Ng01-253K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,670,993 - 89,672,151)(89,533,162 - 89,534,263)
sequence
tataattttgtgggatatgtagtattttaaatttccctagtgaggtcagt
cagctgaaaatacactgagcaaaagaaattaagcacaaataaatgataac
ccataaaaccccaaaacaaattagcagatatccttagaagagaatacatt
agaaaattagcagtttatttttttaaaagaaatactatttctacttatag
ggtcttttaacatttgtgaaaattgctttggaaatcagagcacaaatcga
ttggagcaacaggggaaaaggaataattagatagttggtaggtcatagag
aaactatccaatcatgtggcaactttggggactactaaaaggtgattgtc
tgaatatgattacagcattttaacaaaattatgtagcaatgtttaggttt
aagttgacaatattctctgtgttgtttttacagaggcctaattcagtgca
gaaatgagtttaggagacaaagtaattgaggagtgcaaatgtaattcact
aggctgcaataatattttgacaggttaaatataattcccacagcgatttg
aatgaagagctccaagagaaattgtctgggtgcaaagcaaccccaaacaa
attttgtgaatgcattagtcaagcaacacgaatgcaaaatgaaattgaca
aattcaatatagaagtattccccaagaatattggaatggagattctgtga
gttgtctttaagtgacttataagataaggagtccatctacatctttcctc
tatattacattctacaaaatattttaagacaatttcataaatgtcaaaaa
gctatagtctttttaagtatatgaactatgttgtcgctatgtttgtgctc
taaaattataactagatggcttatggattttcataaatttatctttataa
gcttatctcacaaaatataatttaaaggtttactaaaataaagtaattat
acatttaattatacattaaaaataattttgtagtctataaatatatatgg
gcatttgaatgttagaatacttttttctttctatttagtacacgtgatta
tatattcccaattccttgactgggatgaacaggagtaatacatcaataca
aatgcctctttctttctagcaactcatactgtaacacttgcttttttatc
aattactg

gaattccataaaacaagtgtacactctggcctttattattgatttcagaa
atttcactgtattcagaaatagataagataatattggtttacaatttcct
taatagaacatcaatagctcaggcactaagatcaataattaatatttgaa
acttcatgaaactgaaaacttctataaggacttggatactctcagtagga
caaaatgacagtctacacaatcgaaaaactcttcaccaaacctacaattg
accgaaggctaatatccaaaatacataaagggcttaagaaattagacacc
aacaacctaagcaacccaattaattagtgggctacagaaataaccagaga
attctcaatagagggatctctaattgccaagtagcacttaaagaaatgtt
caaagtactcagtcatcatgaaatgcaaatcaaaatggcactgaaattcc
atcttctacctgtcaggatggctaaagtcaaaaactcaaagggcaaagga
cagcacatgctgttggggttgtggagcaagtagaacactgccctgttgct
ggtggaaggcaaattgtccaaccactttgtcaaacaatctggtggtttct
cagaaaattgggactactgttaccttaagacctggctataccacttctgg
gcatgtacccaaaactacaccattataccacacaaatacttgtttcaact
atgttcatagtaattttattcataagggccagaagtggaagcataccagg
tgcccaccaaaagaagaatgaataaaaaaattggtacatttaaacaattt
aatcctactcagctattaaaacaaggacatcatgaagtttgcaggcaaat
gggtgcaactaaaaaatatcattctgagggaggtaacccagacccagaaa
acacgtatggtatgtactcattataagtagctattatccatatattatag
gacacacacactattctcacagacccaataagctaagtattttttcatgt
aaaactgaaaatttctctttgtgcccagaaattgtattatagtattgata
acatatatttgcatacctgtcagagagtgactatctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89670993_89672151
seq2: B6Ng01-253K04.b_54_1211 (reverse)

seq1  CAGTATTTGATAAAAAACCAAATTGTTTACAGTATGAGTTGCTAGAAGGA  50
      ||||| ||||||||||| ||| |   ||||||||||||||||||||| ||
seq2  CAGTAATTGATAAAAAAGCAAGT--GTTACAGTATGAGTTGCTAGAAAGA  48

seq1  AAAGGAAGCATTTGTA-TGATGTATTAACTCTTGTTCATCCCAGTCAAGG  99
      ||  || ||||||||| ||||||||| |||| ||||||||||||||||||
seq2  AA--GAGGCATTTGTATTGATGTATT-ACTCCTGTTCATCCCAGTCAAGG  95

seq1  AATTGGGAATATATAATCACGTGTACTAAATAGAAAG-AAAAAGTATTCT  148
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATTGGGAATATATAATCACGTGTACTAAATAGAAAGAAAAAAGTATTCT  145

seq1  AACATTCAAATGCCCATATATATTTATAGACTACAAAATTA-TTTTAATG  197
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACATTCAAATGCCCATATATATTTATAGACTACAAAATTATTTTTAATG  195

seq1  TATAATT-AATGTATAATTACTTTATTTTAGTAAACCTTTAAATTATATT  246
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAAATGTATAATTACTTTATTTTAGTAAACCTTTAAATTATATT  245

seq1  TTGTGAGATAAGCTTATAAAGATAAATTTATGAAAATCCATAAGCCATCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGATAAGCTTATAAAGATAAATTTATGAAAATCCATAAGCCATCT  295

seq1  AGTTATAATTTTAGAGCACAAACATAGCGACAACATAGTTCATATACTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAATTTTAGAGCACAAACATAGCGACAACATAGTTCATATACTTA  345

seq1  AAAAGACTATAGCTTTTTGACATTTATGAAATTGTCTTAAAATATTTTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTATAGCTTTTTGACATTTATGAAATTGTCTTAAAATATTTTGT  395

seq1  AGAATGTAATATAGAGGAAAGATGTAGATGGACTCCTTATCTTATAAGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTAATATAGAGGAAAGATGTAGATGGACTCCTTATCTTATAAGTC  445

seq1  ACTTAAAGACAACTCACAGAATCTCCATTCCAATATTCTTGGGGAATACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGACAACTCACAGAATCTCCATTCCAATATTCTTGGGGAATACT  495

seq1  TCTATATTGAATTTGTCAATTTCATTTTGCATTCGTGTTGCTTGACTAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTGAATTTGTCAATTTCATTTTGCATTCGTGTTGCTTGACTAAT  545

seq1  GCATTCACAAAATTTGTTTGGGGTTGCTTTGCACCCAGACAATTTCTCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCACAAAATTTGTTTGGGGTTGCTTTGCACCCAGACAATTTCTCTT  595

seq1  GGAGCTCTTCATTCAAATCGCTGTGGGAATTATATTTAACCTGTCAAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTTCATTCAAATCGCTGTGGGAATTATATTTAACCTGTCAAAAT  645

seq1  ATTATTGCAGCCTAGTGAATTACATTTGCACTCCTCAATTACTTTGTCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGCAGCCTAGTGAATTACATTTGCACTCCTCAATTACTTTGTCTC  695

seq1  CTAAACTCATTTCTGCACTGAATTAGGCCTCTGTAAAAACAACACAGAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCATTTCTGCACTGAATTAGGCCTCTGTAAAAACAACACAGAGA  745

seq1  ATATTGTCAACTTAAACCTAAACATTGCTACATAATTTTGTTAAAATGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTCAACTTAAACCTAAACATTGCTACATAATTTTGTTAAAATGCT  795

seq1  GTAATCATATTCAGACAATCACCTTTTAGTAGTCCCCAAAGTTGCCACAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCATATTCAGACAATCACCTTTTAGTAGTCCCCAAAGTTGCCACAT  845

seq1  GATTGGATAGTTTCTCTATGACCTACCAACTATCTAATTATTCCTTTTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGATAGTTTCTCTATGACCTACCAACTATCTAATTATTCCTTTTCC  895

seq1  CCTGTTGCTCCAATCGATTTGTGCTCTGATTTCCAAAGCAATTTTCACAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGCTCCAATCGATTTGTGCTCTGATTTCCAAAGCAATTTTCACAA  945

seq1  ATGTTAAAAGACCCTATAAGTAGAAATAGTATTTCTTTTAAAAAAATAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAAGACCCTATAAGTAGAAATAGTATTTCTTTTAAAAAAATAAA  995

seq1  CTGCTAATTTTCTAATGTATTCTCTTCTAAGGATATCTGCTAATTTGTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAATTTTCTAATGTATTCTCTTCTAAGGATATCTGCTAATTTGTTT  1045

seq1  TGGGGTTTTATGGGTTATCATTTATTTGTGCTTAATTTCTTTTGCTCAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTTTATGGGTTATCATTTATTTGTGCTTAATTTCTTTTGCTCAGT  1095

seq1  GTATTTTCAGCTGACTGACCTCACTAGGGAAATTTAAAATACTACATATC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCAGCTGACTGACCTCACTAGGGAAATTTAAAATACTACATATC  1145

seq1  CCACAAAATTATA  1159
      |||||||||||||
seq2  CCACAAAATTATA  1158


seq1: chr14_89533162_89534263
seq2: B6Ng01-253K04.g_63_1151

seq1  GAATTCCATAAAACAAGTGTACACTCTGGCCTTTATTATTGATTTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAACAAGTGTACACTCTGGCCTTTATTATTGATTTCAGAA  50

seq1  ATTTCACTGTATTCAGAAATAGATAAGATAATATTGGTTTACAATTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACTGTATTCAGAAATAGATAAGATAATATTGGTTTACAATTTCCT  100

seq1  TAATAGAACATCAATAGCTCAGGCACTAAGATCAATAATTAATATTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAACATCAATAGCTCAGGCACTAAGATCAATAATTAATATTTGAA  150

seq1  ACTTCATGAAACTGAAAACTTCTATAAGGACTTGGATACTCTCAGTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATGAAACTGAAAACTTCTATAAGGACTTGGATACTCTCAGTAGGA  200

seq1  CAAAATGACAGTCTACACAATCGAAAAACTCTTCACCAAACCTACAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGACAGTCTACACAATCGAAAAACTCTTCACCAAACCTACAATTG  250

seq1  ACCGAAGGCTAATATCCAAAATACATAAAGGGCTTAAGAAATTAGACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAAGGCTAATATCCAAAATACATAAAGGGCTTAAGAAATTAGACACC  300

seq1  AACAACCTAAGCAACCCAATTAATTAGTGGGCTACAGAAATAACCAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCTAAGCAACCCAATTAATTAGTGGGCTACAGAAATAACCAGAGA  350

seq1  ATTCTCAATAGAGGGATCTCTAATTGCCAAGTAGCACTTAAAGAAATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAATAGAGGGATCTCTAATTGCCAAGTAGCACTTAAAGAAATGTT  400

seq1  CAAAGTACTCAGTCATCATGAAATGCAAATCAAAATGGCACTGAAATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTACTCAGTCATCATGAAATGCAAATCAAAATGGCACTGAAATTCC  450

seq1  ATCTTCTACCTGTCAGGATGGCTAAAGTCAAAAACTCAAAGGGCAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTACCTGTCAGGATGGCTAAAGTCAAAAACTCAAAGGGCAAAGGA  500

seq1  CAGCACATGCTGTTGGGGTTGTGGAGCAAGTAGAACACTGCCCTGTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACATGCTGTTGGGGTTGTGGAGCAAGTAGAACACTGCCCTGTTGCT  550

seq1  GGTGGAAGGCAAATTGTCCAACCACTTTGTCAAACAATCTGGTGGTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAGGCAAATTGTCCAACCACTTTGTCAAACAATCTGGTGGTTTCT  600

seq1  CAGAAAATTGGGACTACTGTTACCTTAAGACCTGGCTATACCACTTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATTGGGACTACTGTTACCTTAAGACCTGGCTATACCACTTCTGG  650

seq1  GCATGTACCCAAAACTACACCATTATACCACACAAATACTTGTTTCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTACCCAAAACTACACCATTATACCACACAAATACTTGTTTCAACT  700

seq1  ATGTTCATAGTAATTTTATTCATAAGGGCCAGAAGTGGAAGCATACCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATAGTAATTTTATTCATAAGGGCCAGAAGTGGAAGCATACCAGG  750

seq1  TGCCCACCAAAAGAAGAATGAATAAAAAAATTGGTACATTTAAACAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCAAAAGAAGAATGAATAAAAAAATTGGTACATTTAAACAATTT  800

seq1  AATCCTACTCAGCTATTAAAACAAGGACATCATGAAGTTTGCAGGCAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTACTCAGCTATTAAAACAAGGACATCATGAAGTTTGCAGGCAAAT  850

seq1  GGGTGCAACTAAAAAATATCATTCTGAGGGAGGTAACCCAGACCCAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCAACTAAAAAATATCATTCTGAGGGAGGTAACCCAGACCCAGAAA  900

seq1  ACACGTATGGTATGTACTCATTTATAAGTAGCTATTATCCATATATTATA  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACACGTATGGTATGTACTCA-TTATAAGTAGCTATTATCCATATATTATA  949

seq1  GGACACACACACTATTCTCCACAGACCCAAATAAGCTAAGTAATTTTTTC  1000
      |||||||||||||||||| ||||||||| |||||||||||| ||||||||
seq2  GGACACACACACTATTCT-CACAGACCC-AATAAGCTAAGT-ATTTTTTC  996

seq1  ATTGGTAAAAACTGAAAATTTCTCTTTGTGCCCCAGAAATTGTATTATAG  1050
      ||  || ||||||||||||||||||||||| |||||||||||||||||||
seq2  AT--GT-AAAACTGAAAATTTCTCTTTGTG-CCCAGAAATTGTATTATAG  1042

seq1  TAATTTGATAACATTATAATTTGCATA-CTGTCAGAGAGTGACATATTCT  1099
      ||  ||||||||| ||| ||||||||| ||||||||||||||| || |||
seq2  TA--TTGATAACA-TAT-ATTTGCATACCTGTCAGAGAGTGAC-TA-TCT  1086

seq1  ATG  1102
      |||
seq2  ATG  1089


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