BAC Information

Click to search

BAC

Clone NameB6Ng01-254D09
Chromosome14 (Build37)
Map Location 73,563,121 - 73,748,411
singlet/doubletdoublet
Overlap geneRcbtb2, Rb1, P2ry5
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149
Downstream geneItm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578, LOC629583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254D09.bB6Ng01-254D09.g
ACCGA060741GA060742
length1,1581,178
definitionB6Ng01-254D09.b B6Ng01-254D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,563,121 - 73,564,283)(73,747,226 - 73,748,411)
sequence
gaattctaggaaggaaaaggagaagactgagtaaaaccatccctgaattc
gcagctatagatctgtgtcacattagactgaatggtctggggagtctcag
gccatgaagtatattaagagtgtgatagagattcatgcagatcctttgta
gcatgagttgcctctacggaagcctggaaggatcatcagaggcagctttt
cagtgttagtaagccacatgtgatctaagataagcagttgtgggcactaa
ggcaccgtggctgtggtgaaagacacatccttgtggcctttccttgctga
tttagagtcggccagtacttctctccattaagtgcctgcttctgtcagct
gagcagaggggtggggtttgtacggaaaggactgaagtctgcaggtggcg
gacactcttctgtttgggaacgtggctcctgctcttccctgtcttggtct
ctctggtcagatgacagcgtagccttgcttgctcatgtggaaaaggagca
tgcgtgagcactgccacacttgggttggggacagcaccagagctcagtcc
aaacgccaacttcctgtaaagtctaaacacatgagacctggtagaagtag
tggacaggtgattagtaaacatgagctgttagaatatcagacaagatggc
agaaaagaaaatatctgcagaggaaaaaagatctacatcatagaagattt
ggaaaagacccagtaaacaattattgtcaagtgagccttgactggacaaa
ttctatagcagtttgtataccacaaaagaagaaaatcaaaccagacaatc
agagaaagccactcagaatacagcctatggaatgtggtagaaaacacagg
gagcacacatgtgattgatttcattcaaagtgcagaatcagaaaaggaag
tcattttgtggaaggtgcgcatatcgagggctttggggaaacacgctatg
ttttggcctgagtagtatgtgggtgttatgatttcttatccataaattgc
acattttatgaattttataattgtatgagtactatgataaatttaaaatg
tggtcatcatcctctaagggaagtgaggaccagagagttaggacaccctc
gaactttgattcgccttctttacctattgcagaaacacgtctagctctag
attaactt
gaattcactggactcagaaccctattgtgcttctgtaaatcacgggccag
gaaggatttcctagcagaggctgagggccaggaccaaagacagatgtttg
agagggagagaaaacgtttttaatttattttttaaaaaaattattcttaa
ggggaagagagaggcaggagaggggaggggaacggaaggggagcaaaaga
gaagaggcctgtgccagccagaggcatcagatccctagttttagaattac
agctggttgtgagctttgacctgggtgctgggaactgaacttgggtcttc
tgcaagagcatacaggctctgaaccggagccatctcgtcagactgaaaat
acattttaagtagggctatggttatattctcatgagtttgtttatgtatg
tattcgtttgtttattctgagtatttcatttagacccacatggcccctca
agctgacaatatatatgggaatggctttgaactaccttggtgctggggtc
acaggtgagaagcgccatgccaggtgcctgaggtgctgggactgaaccca
ggcctctaggtttgctgggcaagcactctaccaactaactgagctctgtc
ttcagcccagtttccttatttttaaacatcatcatctgtgtgaataagtt
tgagcaaatatacattttaagaattactcagctgggtatggtgacacatg
cctttaatcctagcttttgcaaagcagagacagatggatctcttgagttt
gaggccagcctggtctccagaacgagttccaggacagccagggctacaca
gaaaaaccctgtcttggggaaaagaaaacaaaccaaagaatcgaatatcc
ctccccatgccctacttcaaaccgtacatgtgaaggttagaaataaattg
gcaggaaacagctaattgttcttcagcaacagctcagggacaatcgtgtg
aagcagcgtgctgatgggctcactcttcagtttcctatcagctcataaac
atggcctggctgtttctcatgggtaaatttaacctcgcacctcaggcctc
cgcgtcttcactgctgtctgtgtgcagagcatgatcaagcaagttctgga
cactgtgacttaacaggaacatcttcagtcaaacagacggtgtacattag
catcaatccaggtttattcctggaccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_73563121_73564283
seq2: B6Ng01-254D09.b_52_1209

seq1  GAATTCTAGGAAGGAAAAGGAGAAGACTGAGTAAAACCATCCCTGAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAAGGAAAAGGAGAAGACTGAGTAAAACCATCCCTGAATTC  50

seq1  GCAGCTATAGATCTGTGTCACATTAGACTGAATGGTCTGGGGAGTCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTATAGATCTGTGTCACATTAGACTGAATGGTCTGGGGAGTCTCAG  100

seq1  GCCATGAAGTATATTAAGAGTGTGATAGAGATTCATGCAGATCCTTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAAGTATATTAAGAGTGTGATAGAGATTCATGCAGATCCTTTGTA  150

seq1  GCATGAGTTGCCTCTACGGAAGCCTGGAAGGATCATCAGAGGCAGCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGTTGCCTCTACGGAAGCCTGGAAGGATCATCAGAGGCAGCTTTT  200

seq1  CAGTGTTAGTAAGCCACATGTGATCTAAGATAAGCAGTTGTGGGCACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTAGTAAGCCACATGTGATCTAAGATAAGCAGTTGTGGGCACTAA  250

seq1  GGCACCGTGGCTGTGGTGAAAGACACATCCTTGTGGCCTTTCCTTGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCGTGGCTGTGGTGAAAGACACATCCTTGTGGCCTTTCCTTGCTGA  300

seq1  TTTAGAGTCGGCCAGTACTTCTCTCCATTAAGTGCCTGCTTCTGTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTCGGCCAGTACTTCTCTCCATTAAGTGCCTGCTTCTGTCAGCT  350

seq1  GAGCAGAGGGGTGGGGTTTGTACGGAAAGGACTGAAGTCTGCAGGTGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGGGGTGGGGTTTGTACGGAAAGGACTGAAGTCTGCAGGTGGCG  400

seq1  GACACTCTTCTGTTTGGGAACGTGGCTCCTGCTCTTCCCTGTCTTGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCTTCTGTTTGGGAACGTGGCTCCTGCTCTTCCCTGTCTTGGTCT  450

seq1  CTCTGGTCAGATGACAGCGTAGCCTTGCTTGCTCATGTGGAAAAGGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCAGATGACAGCGTAGCCTTGCTTGCTCATGTGGAAAAGGAGCA  500

seq1  TGCGTGAGCACTGCCACACTTGGGTTGGGGACAGCACCAGAGCTCAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGAGCACTGCCACACTTGGGTTGGGGACAGCACCAGAGCTCAGTCC  550

seq1  AAACGCCAACTTCCTGTAAAGTCTAAACACATGAGACCTGGTAGAAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCCAACTTCCTGTAAAGTCTAAACACATGAGACCTGGTAGAAGTAG  600

seq1  TGGACAGGTGATTAGTAAACATGAGCTGTTAGAATATCAGACAAGATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGTGATTAGTAAACATGAGCTGTTAGAATATCAGACAAGATGGC  650

seq1  AGAAAAGAAAATATCTGCAGAGGAAAAAAGATCTACATCATAGAAGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAATATCTGCAGAGGAAAAAAGATCTACATCATAGAAGATTT  700

seq1  GGAAAAGACCCAGTAAACAATTATTGTCAAGTGAGCCTTGACTGGACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGACCCAGTAAACAATTATTGTCAAGTGAGCCTTGACTGGACAAA  750

seq1  TTCTATAGCAGTTTGTATACCACAAAAGAAGAAAATCAAACCAGACAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAGCAGTTTGTATACCACAAAAGAAGAAAATCAAACCAGACAATC  800

seq1  AGAGAAAGCCACTCAGAATACAGCCTATGGAATGTGGTAGAAAACACAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCCACTCAGAATACAGCCTATGGAATGTGGTAGAAAACACAGG  850

seq1  GAGCACACATGTGATTGA-TTCATTCAAAGTGCAGAATCAGAAAAGGAAG  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGCACACATGTGATTGATTTCATTCAAAGTGCAGAATCAGAAAAGGAAG  900

seq1  TCATTTTGTGGAAGGTGCGCATATCGAGGGCTTTGGGGAAACACGCTATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTGGAAGGTGCGCATATCGAGGGCTTTGGGGAAACACGCTATG  950

seq1  TTTTGGCCTGAGTAGTATGTGGGTGTTATGATTTCTTATCCATAAAATTG  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTGGCCTGAGTAGTATGTGGGTGTTATGATTTCTTATCCAT-AAATTG  999

seq1  CACATTTTATGAATTTTTATAATTGTATGAGTACTATGATAAATTTTAAA  1049
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  CACATTTTATGAA-TTTTATAATTGTATGAGTACTATGATAAA-TTTAAA  1047

seq1  ATGTGGTCATCAT-CTCTAAAGGAAGTGAAGACCCAGAAGAGTTAAGGAA  1098
      ||||||||||||| |||||| |||||||| || |||| |||||| |||| 
seq2  ATGTGGTCATCATCCTCTAAGGGAAGTGAGGA-CCAG-AGAGTT-AGGAC  1094

seq1  CACCTCGAACTTTGATTTTCGCTCTTTACTTA-TGCAGAAACCAACGTCT  1147
        |||||||||||||||  |  ||||||| || |||||||||  ||||||
seq2  ACCCTCGAACTTTGATTCGCCTTCTTTACCTATTGCAGAAAC--ACGTCT  1142

seq1  AGCTCTAGATTAACTT  1163
      ||||||||||||||||
seq2  AGCTCTAGATTAACTT  1158

seq1: chr14_73747226_73748411
seq2: B6Ng01-254D09.g_67_1244 (reverse)

seq1  CTGGTCCAGAAATAACACTGGGAAATGGGTTGCTAATGTACA-CGTCTGT  49
      ||||||||| |||||  ||||   ||  | |||||||||||| |||||||
seq2  CTGGTCCAGGAATAAACCTGG---AT-TGATGCTAATGTACACCGTCTGT  46

seq1  CTG-CTGAAAGATG-TCCTG-TAAGTCACAAGGTGTCAAGAACCTTTGGC  96
       || ||| |||||| ||||| |||||||||  ||||| |||||   | ||
seq2  TTGACTG-AAGATGTTCCTGTTAAGTCACA--GTGTCCAGAAC---TTGC  90

seq1  CTGATCATTGCTCTGCACACAGGACAGCAGTGGAGACGCGGAGG-CTGA-  144
       |||||| ||||||||||||| |||||||||| ||||||||||| |||| 
seq2  TTGATCA-TGCTCTGCACACA-GACAGCAGTGAAGACGCGGAGGCCTGAG  138

seq1  GTGCGAGGTTAAATTTACCCATGAAGGAAACAGCCAGGCCATGTTTATGA  194
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  GTGCGAGGTTAAATTTACCCATGA--GAAACAGCCAGGCCATGTTTATGA  186

seq1  GCTGATAGGAAACTGAAGAGTGAGCCCATCAGCACGCTGCTTCACACGAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAGGAAACTGAAGAGTGAGCCCATCAGCACGCTGCTTCACACGAT  236

seq1  TGTCCCTGAGCTGTTGCTGAAGAACAATTAGCTGTTTCCTGCC-ATTTAT  293
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTCCCTGAGCTGTTGCTGAAGAACAATTAGCTGTTTCCTGCCAATTTAT  286

seq1  TTCTAACCTTCACATGTACGGTTTGAAGTAGGGCATGGGGAGGGATATTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACCTTCACATGTACGGTTTGAAGTAGGGCATGGGGAGGGATATTC  336

seq1  GATTCTTTGGTTTTGTTTTCTTTTCCCCAAGACAGGGTTTTTCTGTGTAG  393
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTGG-TTTGTTTTCTTTTCCCCAAGACAGGGTTTTTCTGTGTAG  385

seq1  CCCTGGCTGTCCTGGAACTCGTTCTGGAGACCAGGCTGGCCTCAAACTCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAACTCGTTCTGGAGACCAGGCTGGCCTCAAACTCA  435

seq1  AGAGATCCATCTGTCTCTGCTTTGCAAAAGCTAGGATTAAAGGCATGTGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCATCTGTCTCTGCTTTGCAAAAGCTAGGATTAAAGGCATGTGT  485

seq1  CACCATACCCAGCTGAGTAATTCTTAAAATGTATATTTGCTCAAACTTAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATACCCAGCTGAGTAATTCTTAAAATGTATATTTGCTCAAACTTAT  535

seq1  TCACACAGATGATGATGTTTAAAAATAAGGAAACTGGGCTGAAGACAGAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGATGATGATGTTTAAAAATAAGGAAACTGGGCTGAAGACAGAG  585

seq1  CTCAGTTAGTTGGTAGAGTGCTTGCCCAGCAAACCTAGAGGCCTGGGTTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTAGTTGGTAGAGTGCTTGCCCAGCAAACCTAGAGGCCTGGGTTC  635

seq1  AGTCCCAGCACCTCAGGCACCTGGCATGGCGCTTCTCACCTGTGACCCCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGCACCTCAGGCACCTGGCATGGCGCTTCTCACCTGTGACCCCA  685

seq1  GCACCAAGGTAGTTCAAAGCCATTCCCATATATATTGTCAGCTTGAGGGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAGGTAGTTCAAAGCCATTCCCATATATATTGTCAGCTTGAGGGG  735

seq1  CCATGTGGGTCTAAATGAAATACTCAGAATAAACAAACGAATACATACAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGGTCTAAATGAAATACTCAGAATAAACAAACGAATACATACAT  785

seq1  AAACAAACTCATGAGAATATAACCATAGCCCTACTTAAAATGTATTTTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACTCATGAGAATATAACCATAGCCCTACTTAAAATGTATTTTCA  835

seq1  GTCTGACGAGATGGCTCCGGTTCAGAGCCTGTATGCTCTTGCAGAAGACC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACGAGATGGCTCCGGTTCAGAGCCTGTATGCTCTTGCAGAAGACC  885

seq1  CAAGTTCAGTTCCCAGCACCCAGGTCAAAGCTCACAACCAGCTGTAATTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCAGTTCCCAGCACCCAGGTCAAAGCTCACAACCAGCTGTAATTC  935

seq1  TAAAACTAGGGATCTGATGCCTCTGGCTGGCACAGGCCTCTTCTCTTTTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTAGGGATCTGATGCCTCTGGCTGGCACAGGCCTCTTCTCTTTTG  985

seq1  CTCCCCTTCCGTTCCCCTCCCCTCTCCTGCCTCTCTCTTCCCCTTAAGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTCCGTTCCCCTCCCCTCTCCTGCCTCTCTCTTCCCCTTAAGAA  1035

seq1  TAATTTTTTTAAAAAATAAATTAAAAACGTTTTCTCTCCCTCTCAAACAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTTAAAAAATAAATTAAAAACGTTTTCTCTCCCTCTCAAACAT  1085

seq1  CTGTCTTTGGTCCTGGCCCTCAGCCTCTGCTAGGAAATCCTTCCTGGCCC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTGGTCCTGGCCCTCAGCCTCTGCTAGGAAATCCTTCCTGGCCC  1135

seq1  GTGATTTACAGAAGCACAATAGGGTTCTGAGTCCAGTGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTACAGAAGCACAATAGGGTTCTGAGTCCAGTGAATTC  1178