BAC Information

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BAC

Clone NameB6Ng01-256I15
Chromosome14 (Build37)
Map Location 5,039,924 - 5,041,186
singlet/doubletsinglet
Overlap geneLOC666808
Upstream geneLOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815
Downstream geneEG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256I15.bB6Ng01-256I15.g
ACCGA062471GA062472
length1,1711,170
definitionB6Ng01-256I15.b B6Ng01-256I15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtgttgttcagagcagcctgcaaggctatgtttttataagtaa
cagatgcctgcactttgagaaattaattgcctggctcctggatgtgaagg
tgtgcaatgtgtctttaagcaatcagcatcctttcaaagagtaagaaata
aaacccgtcctcttccccaaataggcatgggccttagaccacctttcact
tcagtcacccttgactggattctgggaaatgttgctatataaaacctgaa
agtttaatgtgtaggttgaaatacaggatagctgccaaagtgacctttca
ctatatagagtgtggggaagagaacattagaatcataatcacattttggt
cccagcttgtgccctctgtcttctttacattaaaaggaaaagtctgaact
gtgttaggccttttactaggggtctttgtcttgacttgtctgtgaccaaa
tagtcagactaagacaaaggtcactaaaaggacattattttggttttggc
cgtgtataggctttctgtactctaggcactgatctggatctccgaccaag
gccatttgatgctattgtttcttagaaagttctcggcagtgtgtactagt
agttacagaatttcatattatagggccagaaggacttttgaagtccattt
caccccgtgttttccctcgctaaagggaataactgacacacaagagaggc
tgtctctgtgctaaaaggattgctctactgagaacccccccaccaagtcg
gtagagaattcaccattggaaaatcactaacagcactgtgaaggtttcta
aggtgggcagcaggaagcctgtccttttcctaccctctccctcagcccct
cttccccaacctgtgtaggattttgaggtcgaatgtgcattgtgcactgc
tgctgcaaggtagctcttccctgtggctgtgctgaagcagctggccaggg
aggtctggagctgaggctccagcctgtgattctctttccttagattttag
tctgcaccaggggaggtggtgttcttctcctggtggggtggtggtgtata
taattatccttacttatactttgttcaacggtagttccggtgcaattcct
tcagcaatttctggaatgggcgctaggattcaccctttccttgaacaaaa
agctctcagagacgagctgaa
gaattcaataactcacttaaagagatacagggaaacactgctaaagagtt
acaagtccttaaagaaaaacaggaaaacactgctaaagagttacaagtcc
ttaaagaaaaacaggaaaacacaaccaaacaggtagaagtccttatagaa
aaaaaggaaaacacatacaaacaggtgatggaaatgaacaaaaccatact
agacctaaaaagggaagtagacacaataaagaaaacccaaagtgaggcaa
cgctggagatagaaaccctaggaaagaaatctggaaccatagatgccagc
atcagcaacagaatacaagagatggaagagagaatctcaggtgcagaaga
ctccatagagaacatcggcacaacaattaaagaaaatggaaaatgcaaaa
agatcctaactaaaaacatccaggaaatccaggacacaatgagaagacca
aacctacggataataggagtggatgagaatgaagattttcaactcaaagg
accagcaaacatcttcaacaaaattattgaagaaaacttcccaaatctaa
agaaagagatgcccatgaacatacaagaagcctacagaactccaaataga
ctggaccagaaaagaaattcctcccgacacataataatcagaacatcaaa
tgcactaaataaagatagaatactaaaagcagtaagggaaaaaggtcaag
taacatataaaggcaagcctatcagaattacaccagatttttcaccagag
actatgaaagccagaagagcctggactgatgttatacagacactaagaga
acacaaatgccagcccaggctactatacccagccaaactctcaattacca
tagatggagaaaccaaagtattccacgacaaaactaaattcacccattat
ctctccatgaatccagccctttcaaaggatagtaacagaaaaaaaaccaa
tacaaggacggaaccacgccctagaaaaaacaagaaggataatccctcac
aaactaaaaagaaggacagccacaaggaacagaatgccacttaacacaaa
aaaataacaggagcacattaccattcgtatatctcttatatcatgtctca
ttcccataaagaactggactatgactgcttacacaaacagaaccaaacaa
tttctgggccgtgccttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_5039924_5041186
seq2: B6Ng01-256I15.b_45_1215

seq1  GAATTCTGTGTTGATCAGAGCAGCCTGCAAGGCTAGGTTTTTATAAGTAA  50
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  GAATTCTGTGTTGTTCAGAGCAGCCTGCAAGGCTATGTTTTTATAAGTAA  50

seq1  CAGATACCTGCACTTTGAGAAATTAATTGCCTGGCTCCTGGATGTGAAGG  100
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCCTGCACTTTGAGAAATTAATTGCCTGGCTCCTGGATGTGAAGG  100

seq1  TGTGCAATGTGTCTTTAAGCAATCAGCATCCTTTCAAAGAGTAAGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAATGTGTCTTTAAGCAATCAGCATCCTTTCAAAGAGTAAGAAATA  150

seq1  AAACCCGTCCTCTTCTCCAAATAGGCATGGGCCTTAGACCACCTTTCACT  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAACCCGTCCTCTTCCCCAAATAGGCATGGGCCTTAGACCACCTTTCACT  200

seq1  TCAGTCACCCTTGACTGGATTCTGGGAAATGTTGCTATATAAAACCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACCCTTGACTGGATTCTGGGAAATGTTGCTATATAAAACCTGAA  250

seq1  AGTTTAATGTGTAGGTTGAAATACAGGATAGCTGCCAAAGTGACCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATGTGTAGGTTGAAATACAGGATAGCTGCCAAAGTGACCTTTCA  300

seq1  CTATATAGAGTGTGGGGAAGAGAACATTAGAATCATAATCACATTTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGAGTGTGGGGAAGAGAACATTAGAATCATAATCACATTTTGGT  350

seq1  CCCAGCTTGTGCCCTCTGTCTTCTTTACATTAAAAGGAAAAGTCTGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTGTGCCCTCTGTCTTCTTTACATTAAAAGGAAAAGTCTGAACT  400

seq1  GTGTTAGGCCTTTTACTAGGGGTCTTTGTCTTGACTTGTCTGTGACCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGGCCTTTTACTAGGGGTCTTTGTCTTGACTTGTCTGTGACCAAA  450

seq1  TAGTCAGACTAAGACAAAGGTCACTAAAAGGACATTATTTTGGTTTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGACTAAGACAAAGGTCACTAAAAGGACATTATTTTGGTTTTGGC  500

seq1  CGTGTATAGGCTTTCTGTACTCTAGGCACTGATCTGGATCTCCAACCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CGTGTATAGGCTTTCTGTACTCTAGGCACTGATCTGGATCTCCGACCAAG  550

seq1  GCCATTTGATGCTATTGTTTCTTAGAAAGTTCTCGGCAGTGTGTACTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGATGCTATTGTTTCTTAGAAAGTTCTCGGCAGTGTGTACTAGT  600

seq1  AGTTACAGAATTTCATATTATAGGGCCAGAAGGACTTTTGAAGTCCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGAATTTCATATTATAGGGCCAGAAGGACTTTTGAAGTCCATTT  650

seq1  CACCCCGTGTTTTCCCTCGCTAAAGGGAATAACTGACGCAAAAGAGAGGC  700
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  CACCCCGTGTTTTCCCTCGCTAAAGGGAATAACTGACACACAAGAGAGGC  700

seq1  TGTCTCTGTGCTAAAAGGATTGCTCTACTGAGAACCCCCCCACCAAGTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGTGCTAAAAGGATTGCTCTACTGAGAACCCCCCCACCAAGTCG  750

seq1  GTAGAGAATTCACCATTGGAAAATCACTAACAGCACTGTGAAGGTTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAATTCACCATTGGAAAATCACTAACAGCACTGTGAAGGTTTCTA  800

seq1  AGGTGGACAGCAGGAAGCCTGTCCTTTTCCTACCCTCTCCCTCAGCCCCT  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGCAGCAGGAAGCCTGTCCTTTTCCTACCCTCTCCCTCAGCCCCT  850

seq1  CTTCCCCCACCTGTGTAGGATTTTGAGGTCGAATGTGCATTGTGCACTGC  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCAACCTGTGTAGGATTTTGAGGTCGAATGTGCATTGTGCACTGC  900

seq1  TGCTGCAAGGTAGCTCTTCCCTGTGGCTGTGCTGAAGCAGCTGGCCAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAAGGTAGCTCTTCCCTGTGGCTGTGCTGAAGCAGCTGGCCAGGG  950

seq1  AAGCCTGGGAGCTGAGGCTCCAGCCTGTGGATTCTCTTTCCTCAGACTTT  1000
      | | || ||||||||||||||||||||| ||||||||||||| ||| |||
seq2  AGGTCT-GGAGCTGAGGCTCCAGCCTGT-GATTCTCTTTCCTTAGATTTT  998

seq1  AGTCTGGACCAGGG--AGTGGTGTTC-TCTCCTGTGGGTGT----GTGTA  1043
      |||||| |||||||   ||||||||| |||||||  || ||    |||||
seq2  AGTCTGCACCAGGGGAGGTGGTGTTCTTCTCCTGGTGGGGTGGTGGTGTA  1048

seq1  TAT-ATATTCTTTACTTTATACTTTGTTCA--CTTAGTT-CGGTGC-ATT  1088
      ||| ||  || |||| ||||||||||||||    ||||| |||||| |||
seq2  TATAATTATCCTTAC-TTATACTTTGTTCAACGGTAGTTCCGGTGCAATT  1097

seq1  CTTCCAGGCA-TTCTGG-ATGGGCGCTTTAGCCTAGACATTTATTTCGGC  1136
      | | |||  | |||||| |||||||||                       
seq2  CCTTCAGCAATTTCTGGAATGGGCGCT-----------------------  1124

seq1  ATATTGTCATCTTGGGCTGCATGCATGTCCTCTCTTGTTTCTGTGTCCTC  1186
                                                        
seq2  --------------------------------------------------  1124

seq1  ATCATGCCCTTCCCAGCTTCCTGTTAGCCAAAGGGAATCACTCTTTC--T  1234
                                       ||| |||| |||||  |
seq2  --------------------------------AGGATTCACCCTTTCCTT  1142

seq1  GAACCAAAAGCTCTCAGAGCAGAGCTGAA  1263
      |||| ||||||||||||||  ||||||||
seq2  GAACAAAAAGCTCTCAGAGACGAGCTGAA  1171