BAC Information

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BAC

Clone NameB6Ng01-256I16
Chromosome2 (Build37)14 (Build37)
Map Location 43,429,120 - 43,430,287123,347,827 - 123,348,223
singlet/doubletsingletsinglet
Overlap geneKynu
Upstream geneLrp1b, LOC100041228, LOC100041245
Downstream geneArhgap15, Gtdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256I16.bB6Ng01-256I16.g
ACCGA062473GA062474
length1,171848
definitionB6Ng01-256I16.b B6Ng01-256I16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(43,429,120 - 43,430,287)(123,347,827 - 123,348,223)
sequence
gaattctttcaaagcaaataatgtattttttggagttacatctcactgag
gtatttcattgtctttcatcctccccccacatgccttcaggctaaaacat
tagcataaagtgctctacagctgatcacagcaatctgtcctgagacaatg
ttgtcaaagcagctttgggaccagagtgttccccaagtcaggacctcagc
tttgacagcttggcttttttgtgtcactctgtactttgacatctctgaag
cactaagtggtgagttctctcattcacagaaaaaaaaaaaaagtcaagcc
tggacaatattttttaaaaagaacacgtcctgcaaaacaataaaagaatg
ctagtcttttatcctaaattattttaataacagacatcaattgcatggaa
ataaatgttactgttttacctttctgaaactaactgagtgcaattgcctc
taaatgctgatgtgtagactacaagaaagcctgtggctcagacatgctaa
gttcacactaggcacccagtgagctcagtcactaacatatgaatacatta
tagaatcatttctctctctctctctcttttttgttttttttttttttggt
ttttcaagacagggtttctctgtatagccctggctgtcctggaactcact
ttgtagaacaggctgacctcgaattcagaaatccacctgcctctgcctcc
aaagtgctgagattaaaggcgtgctccaccactgcccagccattttattt
tcaaaaacattgttttgtacacattggtgatgatcagctagacagatggc
ttagagattggcagcacttgctgctcctcaagaggacctgagtttggtcc
ccagcatccacatcaggcagctacttgcctcccgtaattccatcaccaaa
ggcatctgatgcttttttctgggcctctgtgggcaagatgcttgggcatc
tgtctgcacatacttgggcagacacacagaacacatgaataaaaaacaaa
cataaagtaaggagagccatgttagtaagaagctaagtcatgtttcctct
tgaaactctgtagatgctcaaaaataaagactgttattggtctgctgtgg
tatctgctctgtaattgtatccggacttgttgccttttcaatttgagaac
catgggctgaacactcctcct

gaattctatccttttctctctcccataatgctcactctaatctcagtacc
aaggatcagtgactggctagtactcgtttgaaaaataagagtcctttaaa
aattaaattatatttctagcaaggaactgttttgagctttctgaaataaa
agtcctctatcaaccaaaaacaaacaaaagacgaattaaccatctctcct
cctccctgtacaatcagactgtcctcccacacatggtgtatgatggaaat
gaaactaatggcaagcaattgctcaggatgggtttcgcaaacttataaca
agacttagaattcaagcagaacaaaaagtatgcctctcttcccagtgatg
gccaactaggccatcttctgctacatatgtagctagagatacaagctctg
ggggcactggctagttcatattgatgttccacctatagggttgcagaccc
cttcagctccttgggtgctttctttagcttctccattgggggccttgtgt
tccatcctatagatgactgtgagcatccacttctgtatttgacaggcact
ggcatagcctcacatgagacagctataacagggtcccctcagcaaaatct
tcctggcatatgcaatagtgtctgggtttggtggctgattatgggatgga
cccctgggtggggtagtctctgcatagtccatcctttcatctcagctcca
aactttgtctctgtaactcctttcatgggtattatgttccctattctaag
gaggaatgaaatattgcaaactttatatgcctcagtacaggggaatgcca
gggccaagaagcaggagtgggtgggtaggggagcagggcgtggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_43429120_43430287
seq2: B6Ng01-256I16.b_49_1219

seq1  GAATTCTTTCAAAGCAAATAATGTATTTTTTGGAGTTACATCTCACTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAAGCAAATAATGTATTTTTTGGAGTTACATCTCACTGAG  50

seq1  GTATTTCATTGTCTTTCATCCTCCCCCCACATGCCTTCAGGCTAAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCATTGTCTTTCATCCTCCCCCCACATGCCTTCAGGCTAAAACAT  100

seq1  TAGCATAAAGTGCTCTACAGCTGATCACAGCAATCTGTCCTGAGACAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAAAGTGCTCTACAGCTGATCACAGCAATCTGTCCTGAGACAATG  150

seq1  TTGTCAAAGCAGCTTTGGGACCAGAGTGTTCCCCAAGTCAGGACCTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAAGCAGCTTTGGGACCAGAGTGTTCCCCAAGTCAGGACCTCAGC  200

seq1  TTTGACAGCTTGGCTTTTTTGTGTCACTCTGTACTTTGACATCTCTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGCTTGGCTTTTTTGTGTCACTCTGTACTTTGACATCTCTGAAG  250

seq1  CACTAAGTGGTGAGTTCTCTCATTCACAGAAAAAAAAAAAAAGTCAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGTGGTGAGTTCTCTCATTCACAGAAAAAAAAAAAAAGTCAAGCC  300

seq1  TGGACAATATTTTTTAAAAAGAACACGTCCTGCAAAACAATAAAAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATATTTTTTAAAAAGAACACGTCCTGCAAAACAATAAAAGAATG  350

seq1  CTAGTCTTTTATCCTAAATTATTTTAATAACAGACATCAATTGCATGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTTTTATCCTAAATTATTTTAATAACAGACATCAATTGCATGGAA  400

seq1  ATAAATGTTACTGTTTTACCTTTCTGAAACTAACTGAGTGCAATTGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTTACTGTTTTACCTTTCTGAAACTAACTGAGTGCAATTGCCTC  450

seq1  TAAATGCTGATGTGTAGACTACAAGAAAGCCTGTGGCTCAGACATGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTGATGTGTAGACTACAAGAAAGCCTGTGGCTCAGACATGCTAA  500

seq1  GTTCACACTAGGCACCCAGTGAGCTCAGTCACTAACATATGAATACATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACACTAGGCACCCAGTGAGCTCAGTCACTAACATATGAATACATTA  550

seq1  TAGAATCATTTCTCTCTCTCTCTCTCTTTTTTGTTTTTTTTTTTTTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCATTTCTCTCTCTCTCTCTCTTTTTTGTTTTTTTTTTTTTTGGT  600

seq1  TTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACT  650

seq1  TTGTAGAACAGGCTGACCTCGAATTCAGAAATCCACCTGCCTCTGCCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAACAGGCTGACCTCGAATTCAGAAATCCACCTGCCTCTGCCTCC  700

seq1  AAAGTGCTGAGATTAAAGGCGTGCTCCACCACTGCCCAGCCATTTTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCTGAGATTAAAGGCGTGCTCCACCACTGCCCAGCCATTTTATTT  750

seq1  TCAAAAACATTGTTTTGTACACATTGGTGATGATCAGCTAGACAGATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACATTGTTTTGTACACATTGGTGATGATCAGCTAGACAGATGGC  800

seq1  TTAGAGATTGGCAGCACTTGCTGCTCCTCAAGAGGACCTGAGTTTGGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATTGGCAGCACTTGCTGCTCCTCAAGAGGACCTGAGTTTGGTCC  850

seq1  CCAGCATCCACATCAGGCAGCTACTTGCCTCCCGTAATTCCATCACC-AA  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCAGCATCCACATCAGGCAGCTACTTGCCTCCCGTAATTCCATCACCAAA  900

seq1  GGCATCTGATGC-TTTTTCT-GGCCTCTGTGGGC-AGATGCTT-GGCATC  945
      |||||||||||| ||||||| ||||||||||||| |||||||| ||||||
seq2  GGCATCTGATGCTTTTTTCTGGGCCTCTGTGGGCAAGATGCTTGGGCATC  950

seq1  TGTCTGCACATACTT-GGCAGACACACAG-ACACATGAAT-AAAAACAAA  992
      ||||||||||||||| ||||||||||||| |||||||||| |||||||||
seq2  TGTCTGCACATACTTGGGCAGACACACAGAACACATGAATAAAAAACAAA  1000

seq1  CATAAAGTAAGGAGAGCCATGTTAGTAAGAAGGCTAAGTCATGTTTTCTT  1042
      ||||||||||||||||||||||||||||||| ||||||||||| |||| |
seq2  CATAAAGTAAGGAGAGCCATGTTAGTAAGAA-GCTAAGTCATG-TTTCCT  1048

seq1  CTTGAAACTTCTGTAGGATGCTCAAAA--TAAGACTGTTATTGGTTCTGT  1090
      |||||||| |||||| |||||||||||   |||||||||||||| |||| 
seq2  CTTGAAAC-TCTGTA-GATGCTCAAAAATAAAGACTGTTATTGG-TCTGC  1095

seq1  TTGTGTATCTGCTCTGTTAAATTGTATCGGGAC-TGTTGCCTTTTTCATT  1139
      |   |||||||||||||  ||||||||| |||| ||||||| |||||| |
seq2  TGTGGTATCTGCTCTGT--AATTGTATCCGGACTTGTTGCC-TTTTCAAT  1142

seq1  TTGAGACACCTGGGCTGAACCTTCCTCCT  1168
      ||||||  | ||||||||||  |||||||
seq2  TTGAGAACCATGGGCTGAACACTCCTCCT  1171


seq1: chr14_123347827_123348223
seq2: B6Ng01-256I16.g_690_912 (reverse)

seq1  CCTCCCCCTGCCCTGTTCCCCTACCCACCCACTCCCACTTCTTGGCCCTG  50
      |||||||  |||||| |||||||||||||||||||  |||||||||||||
seq2  CCTCCCCACGCCCTGCTCCCCTACCCACCCACTCCTGCTTCTTGGCCCTG  50

seq1  GCATTCCCCTGTACTGGGGCATATAAAGTTTGCTAGACCAAGGGGCCTCT  100
      |||||||||||||||| |||||||||||||||| | |          | |
seq2  GCATTCCCCTGTACTGAGGCATATAAAGTTTGCAATA----------TTT  90

seq1  C-TTCCCAATGATGGCCGACTAGGCCATCTTCTGCTACAT--ATGCAGCT  147
      | ||||   | |     || ||||  |  |  | |  |||  | | || |
seq2  CATTCCTCCTTA-----GAATAGGGAACATAATAC-CCATGAAAGGAGTT  134

seq1  AGAGACACGAGCTCTGGGGGGTACTGGTTAGTTCATATTGTTGTTCCACC  197
      | ||| || |  | ||| |    |||   || | | |   | |       
seq2  ACAGAGACAAAGTTTGGAG----CTG---AGATGAAAGGATGG-------  170

seq1  TCTCTTCAGCTCCTTGGGTACTTTCTCTAG-CTCCTCCATTGGGGGCCCT  246
       || | |||                   || || | |||       ||| 
seq2  ACTATGCAG-------------------AGACTACCCCA-------CCCA  194

seq1  GTGTTCCATCCTATAGATGACTGTGAGCATCCACTTCTATATTTGCCAGG  296
      | | ||||||| ||| ||  | |  | ||  |                  
seq2  GGGGTCCATCCCATA-AT--CAGCCACCAAAC------------------  223

seq1  CACTGGCATAGCCTCACAGGAGACAGCTATATCAGGGTCCTTTCAGCAAA  346
                                                        
seq2  --------------------------------------------------  223

seq1  ATCTTGCTGGCATATGCAATAGTGTCTGCATCCCATAATCAGCCACCAAA  396
                                                        
seq2  --------------------------------------------------  223

seq1  C  397
       
seq2  -  223


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