BAC Information

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BAC

Clone NameB6Ng01-256L09
Chromosome14 (Build37)
Map Location 92,895,001 - 92,972,965
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665377
Downstream geneLOC638252, Pcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256L09.bB6Ng01-256L09.g
ACCGA062600GA062601
length1,0911,137
definitionB6Ng01-256L09.b B6Ng01-256L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,971,858 - 92,972,965)(92,895,001 - 92,896,151)
sequence
gaattcacaacagaggaatcttgaatgtctgagaagcaattaatgaaata
aatgttcaaattacttagtcatcagggaaatacaaatcaaaaagaccctg
agattccaccttacaacaatcggaatggctaagatcaaaagtttagtcaa
caaccacacatgttggtgagaatgtggagaaagaggcacattgctggtgg
gatagcaaatgtagtttcaattaaattagtggaaatttattttatctcat
gtgctgctttacagatgaatatctctagtagtctctggcatttgcatgtt
tgacctccatttggtatctatgtactttgtagatttagaaagtatggtca
tgctgctggtaacatgaccctggagaaggcctttgagattttaggggctc
ctgtcctttgtactttgttatttccttcctccttgcagacccaggtgtgt
gtcttcaacttctatcccagccaatttgccagacatgaagggaacttatc
catcagacacagtaagcaaaataaagtctctcttgcctctcttttataag
tgttggtttgtttttttgtttttttatgtttgttttgtgtttttgttttt
tttttttttgttttttttttttggctgtagtgatttattacagcagtaga
aaagcaactattacacattttaaataaatttgcattcaaagttactttat
aggaaacaggaatataattgacttcccagtcacaaaagactaaaagttac
tgaataattagaaccttcatacaatttacacatgtatttaagcctttatt
atcacaacatttccgtagttttatactcaagagactatgaaggtaaccag
agagatggcttgctaaaacgcactggctggtcttatactatcagcaatgt
ttctgtccatgctcctaagagacctgactcagccagtctttaaatagttt
cctaaaataatttaaatggggggacatggtcatactgagtgtatgtgata
tgtgctagtgatagacacatcttatgagacatgccacaggtgttttctag
tttcaatggatcatctcatctcaggccaccaatgtccagca

gaattcacaatctggagaaatgatggtcctgactttccatgactgctcat
atttattgacacatgcattaattatgactctagactgctctaagtttttg
tagaaattttactttccaaacaaaactcccggtaatttcacatatttaaa
ataacaagtctcagtaaatatctcccatacctgacttttcaaggatagag
agtaagtcccagagaaattcagaaaatgatgaagctcaatttcatcattg
cttttgtatattttgttgaaacaaccacaatcaggtcattgttagtagat
gtattctgccattagggatcttattctgaattaccttgttatctgtaccc
gttaaacacttatagacagggaagggtagtcttgtctctttaggaagaca
tattactggatatttgtgtgtcccatagaatacagaatttacaaatgaca
cattataactacccaagttacttttgaaatatgtgtttatctgccttttc
agagctaatgcctatgcaatctcaaatttaattggaacttacaattagta
ggcaggtgtctgccttagtgagctatccaaattcaatagtgcctaatggc
tatttgattggtatcatcaatacaatatgtcttttcaagcaaatatctat
ttcatgtagtcatcttaaaaattaatactaattgtattttaagccaaaga
gttaatctttgttccttctctgagaatagaatagaatagttattcaggca
actgctagatatgtctaggttattgcaattaaacaaaggcctccagtttg
ccataccataagtccagtgtcactaatattgaatactttcttttttaagg
gcagaaccatatacccatcttccatggcaattgctgcagaggagggtgca
acagagaagtaacccgggaaacctttcaagggatgagtgggcactgaaaa
ctggaaaagtggcaggaagtccaagtagggaaagaagagaaaatgtgtat
cgaaaaaagtagtttgggtaacaggagaaaaaaaatgatattttgcagaa
aacatctgttgctgtgctaattttgcaattgatgttctctcgtctggctc
tgagtagcacttctgagtagttcacacttggctattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_92971858_92972965
seq2: B6Ng01-256L09.b_48_1138 (reverse)

seq1  TGCTGGACATGTGTGCCTGGAGATGAGATGACTCACTGAAACATAGGAAA  50
      ||||||||||  ||| |  ||||||||||||  || |||||| |||  ||
seq2  TGCTGGACATTGGTGGCCTGAGATGAGATGATCCATTGAAAC-TAG--AA  47

seq1  ACCACCTGTGGCCATGTCCTCAATAAAGAATGGTTGTCTATCCACTAGCA  100
      | ||||||||| ||||| ||| ||||   |||  ||||||| ||||||||
seq2  AACACCTGTGG-CATGT-CTC-ATAA--GATG--TGTCTAT-CACTAGCA  89

seq1  CATATTCACAATAACACCTCAGTATGAACCATGTCCCCCCA-TTAAATTA  149
      |||| |||||   ||| ||||||||| |||||||||||||| ||||||||
seq2  CATA-TCACA--TACA-CTCAGTATG-ACCATGTCCCCCCATTTAAATTA  134

seq1  TTTTTAGGAAACTATTTAAAGACTGGCTGAGTCAGGTCTCTTAGGAGCAT  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTAGGAAACTATTTAAAGACTGGCTGAGTCAGGTCTCTTAGGAGCAT  183

seq1  GGGACAGAAACATTGCTGATAGTATAAGACCAGCCAGTGCGTTTTAGCAA  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGACAGAAACATTGCTGATAGTATAAGACCAGCCAGTGCGTTTTAGCAA  232

seq1  GCCATCTCTCTGGTTACCTTCATAGTCTCTTGAGTATAAAACTACGGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCTCTGGTTACCTTCATAGTCTCTTGAGTATAAAACTACGGAAA  282

seq1  TGTTGTGATAATAAAGGCTTAAATACATGTGTAAATTGTATGAAGGTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGATAATAAAGGCTTAAATACATGTGTAAATTGTATGAAGGTTCT  332

seq1  AATTATTCAGTAACTTTTAGTCTTTTGTGACTGGGAAGTCAATTATATTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCAGTAACTTTTAGTCTTTTGTGACTGGGAAGTCAATTATATTC  382

seq1  CTGTTTCCTATAAAGTAACTTTGAATGCAAATTTATTTAAAATGTGTAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTATAAAGTAACTTTGAATGCAAATTTATTTAAAATGTGTAAT  432

seq1  AGTTGCTTTTCTACTGCTGTAATAAATCACTACAGCCAAAAAAAAAAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTTTCTACTGCTGTAATAAATCACTACAGCCAAAAAAAAAAAAC  482

seq1  AAAAAAAAAAAAAACAAAAACACAAAACAAACATAAAAAAACAAAAAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAACAAAAACACAAAACAAACATAAAAAAACAAAAAAAC  532

seq1  AAACCAACACTTATAAAAGAGAGGCAAGAGAGACTTTATTTTGCTTACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACACTTATAAAAGAGAGGCAAGAGAGACTTTATTTTGCTTACTG  582

seq1  TGTCTGATGGATAAGTTCCCTTCATGTCTGGCAAATTGGCTGGGATAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATGGATAAGTTCCCTTCATGTCTGGCAAATTGGCTGGGATAGAA  632

seq1  GTTGAAGACACACACCTGGGTCTGCAAGGAGGAAGGAAATAACAAAGTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGACACACACCTGGGTCTGCAAGGAGGAAGGAAATAACAAAGTAC  682

seq1  AAAGGACAGGAGCCCCTAAAATCTCAAAGGCCTTCTCCAGGGTCATGTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAGGAGCCCCTAAAATCTCAAAGGCCTTCTCCAGGGTCATGTTA  732

seq1  CCAGCAGCATGACCATACTTTCTAAATCTACAAAGTACATAGATACCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCATGACCATACTTTCTAAATCTACAAAGTACATAGATACCAAA  782

seq1  TGGAGGTCAAACATGCAAATGCCAGAGACTACTAGAGATATTCATCTGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTCAAACATGCAAATGCCAGAGACTACTAGAGATATTCATCTGTA  832

seq1  AAGCAGCACATGAGATAAAATAAATTTCCACTAATTTAATTGAAACTACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCACATGAGATAAAATAAATTTCCACTAATTTAATTGAAACTACA  882

seq1  TTTGCTATCCCACCAGCAATGTGCCTCTTTCTCCACATTCTCACCAACAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATCCCACCAGCAATGTGCCTCTTTCTCCACATTCTCACCAACAT  932

seq1  GTGTGGTTGTTGACTAAACTTTTGATCTTAGCCATTCCGATTGTTGTAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTGTTGACTAAACTTTTGATCTTAGCCATTCCGATTGTTGTAAG  982

seq1  GTGGAATCTCAGGGTCTTTTTGATTTGTATTTCCCTGATGACTAAGTAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATCTCAGGGTCTTTTTGATTTGTATTTCCCTGATGACTAAGTAAT  1032

seq1  TTGAACATTTATTTCATTAATTGCTTCTCAGACATTCAAGATTCCTCTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATTTATTTCATTAATTGCTTCTCAGACATTCAAGATTCCTCTGT  1082

seq1  TGTGAATTC  1108
      |||||||||
seq2  TGTGAATTC  1091


seq1: chr14_92895001_92896151
seq2: B6Ng01-256L09.g_64_1200

seq1  GAATTCACAATCTGGAGAAATGATGGTCCTGACTTTCCATGACTGCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATCTGGAGAAATGATGGTCCTGACTTTCCATGACTGCTCAT  50

seq1  ATTTATTGACACATGCATTAATTATGACTCTAGACTGCTCTAAGTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGACACATGCATTAATTATGACTCTAGACTGCTCTAAGTTTTTG  100

seq1  TAGAAATTTTACTTTCCAAACAAAACTCCCGGTAATTTCACATATTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTTACTTTCCAAACAAAACTCCCGGTAATTTCACATATTTAAA  150

seq1  ATAACAAGTCTCAGTAAATATCTCCCATACCTGACTTTTCAAGGATAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGTCTCAGTAAATATCTCCCATACCTGACTTTTCAAGGATAGAG  200

seq1  AGTAAGTCCCAGAGAAATTCAGAAAATGATGAAGCTCAATTTCATCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTCCCAGAGAAATTCAGAAAATGATGAAGCTCAATTTCATCATTG  250

seq1  CTTTTGTATATTTTGTTGAAACAACCACAATCAGGTCATTGTTAGTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTATATTTTGTTGAAACAACCACAATCAGGTCATTGTTAGTAGAT  300

seq1  GTATTCTGCCATTAGGGATCTTATTCTGAATTACCTTGTTATCTGTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTGCCATTAGGGATCTTATTCTGAATTACCTTGTTATCTGTACCC  350

seq1  GTTAAACACTTATAGACAGGGAAGGGTAGTCTTGTCTCTTTAGGAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACACTTATAGACAGGGAAGGGTAGTCTTGTCTCTTTAGGAAGACA  400

seq1  TATTACTGGATATTTGTGTGTCCCATAGAATACAGAATTTACAAATGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGGATATTTGTGTGTCCCATAGAATACAGAATTTACAAATGACA  450

seq1  CATTATAACTACCCAAGTTACTTTTGAAATATGTGTTTATCTGCCTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAACTACCCAAGTTACTTTTGAAATATGTGTTTATCTGCCTTTTC  500

seq1  AGAGCTAATGCCTATGCAATCTCAAATTTAATTGGAACTTACAATTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAATGCCTATGCAATCTCAAATTTAATTGGAACTTACAATTAGTA  550

seq1  GGCAGGTGTCTGCCTTAGTGAGCTATCCAAATTCAATAGTGCCTAATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGTCTGCCTTAGTGAGCTATCCAAATTCAATAGTGCCTAATGGC  600

seq1  TATTTGATTGGTATCATCAATACAATATGTCTTTTCAAGCAAATATCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATTGGTATCATCAATACAATATGTCTTTTCAAGCAAATATCTAT  650

seq1  TTCATGTAGTCATCTTAAAAATTAATACTAATTGTATTTTAAGCCAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTAGTCATCTTAAAAATTAATACTAATTGTATTTTAAGCCAAAGA  700

seq1  GTTAATCTTTGTTCCTTCTCTGAGAATAGAATAGAATAGTTATTCAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCTTTGTTCCTTCTCTGAGAATAGAATAGAATAGTTATTCAGGCA  750

seq1  ACTGCTAGATATGTCTAGGTTATTGCAATTAAACAAAGGCCTCCAGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAGATATGTCTAGGTTATTGCAATTAAACAAAGGCCTCCAGTTTG  800

seq1  CCATACCATAAGTCCAGTGTCACTAATATTGAATACTTTCTTTTTTAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCATAAGTCCAGTGTCACTAATATTGAATACTTTCTTTTTTAAGG  850

seq1  GCAGAACCATATACCCATCTTCCATGGCAATTGCTGCAGAGGAGGGTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACCATATACCCATCTTCCATGGCAATTGCTGCAGAGGAGGGTGCA  900

seq1  ACAGAGAAGTAACCC-GGAAACCTTTCAA-GGATGAGTGGGCACTGAAAA  948
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  ACAGAGAAGTAACCCGGGAAACCTTTCAAGGGATGAGTGGGCACTGAAAA  950

seq1  CTGGAAAAGTGGCAGGGAAGTCCAAGTTAGGGAAAGAAGAGAAAAATGTG  998
      |||||||||||||| ||||||||||| |||||||||||||| ||||||||
seq2  CTGGAAAAGTGGCA-GGAAGTCCAAG-TAGGGAAAGAAGAG-AAAATGTG  997

seq1  TATCGAAAAAAGTAGTTTGGTAAACAGGGAGAAAAAAAATGATATTTTGC  1048
      ||||||||||||||||||||  |||| |||||||||||||||||||||||
seq2  TATCGAAAAAAGTAGTTTGGGTAACA-GGAGAAAAAAAATGATATTTTGC  1046

seq1  AG-AAACATCTGTTTGCTGTTGCTTAAATTTTTGCATTTAAATGTTCTCT  1097
      || ||||||||| |||||| ||||   | ||||||| ||  |||||||||
seq2  AGAAAACATCTG-TTGCTG-TGCT---AATTTTGCAATT-GATGTTCTCT  1090

seq1  CGTCTGGGCTCTGAAGTTAGCACTTCCCTGAAGTAGTTCACACCTTTGCT  1147
      ||||| ||||||||   ||||||||  ||| ||||||||||| ||| |||
seq2  CGTCT-GGCTCTGA--GTAGCACTT--CTG-AGTAGTTCACA-CTTGGCT  1133

seq1  ATTG  1151
      ||||
seq2  ATTG  1137


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