BAC Information

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BAC

Clone NameB6Ng01-257D06
Chromosome14 (Build37)
Map Location 4,481,690 - 4,577,170
singlet/doubletdoublet
Overlap geneLOC100041139, LOC100041151
Upstream geneLOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik
Downstream geneLOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257D06.bB6Ng01-257D06.g
ACCGA062962GA062963
length1,2001,185
definitionB6Ng01-257D06.b B6Ng01-257D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,481,690 - 4,482,891)(4,575,986 - 4,577,170)
sequence
gaattcattctttttaatagctgagtagctcttcattgtttaaatgtatt
ataatttctgtatccattcctctgttaactgacattttggttctttccag
ctactggctatcataattaaggctgctataaacataatggaggttgtgca
gattcaaggcaatttatatactacatagcctataaatcaatgttgttact
tgacttgcaagggacacagcaagtcagactcatctttcatttggggacaa
taagacttaagagtaactttcaggatttgtcaagggtaagataagctcaa
gtagaggacgaaaaggggaaggtagctgttatcagtctgcaattagagga
ccccctagaaaggttgttgttagttaagtgctatatgcctctacaaatcc
tagtataaggggtcagattaaccctgcattgaaaacattaacaaaccagg
aatgtgctatgctgagcactcacagagaattatgaggagctgactaaggc
tccttttacagcaagtaaaaatagacaaagagatcaaatatcctaatacc
acaagatgataaaactgacaactgtagattgcactcagtatcagcgagtt
tagtttcttgtgcatctacagattgtcatgcaacatctgcatcaggaaca
gtacataaggagatggctgctcagtggcatgacaaacaaacaagaagagc
cataacctctacccctctgatctggatgctgagacttaaaagtcttagtt
tgtcaccacctgtcccaggactgctagcatcatttttgcatatgtttacc
ctagcacttgtctacctttggtacaaacacagtggacagtcccacagccc
acagaggaggctccactaccaggcactcactctatcacgaccaggatctt
agaatcccaggatcccagaatcccaggagttagtcacacaagaatcttag
aagtctcacagggaacttttctcccaggaactgcgacacacccaaatctc
aggatcacaggatcccgggaattttacacctgtatccttatagcttatga
tcaggacaggatgcagctggactggaggggtgtgaagaaatacagacatg
tcatgctgagattctgtgtctagaacatctaagctctgcgagtgtgactt
caagatgcaatctttgcacctcaatgcacatatacctggaagttttaaaa

gaattcaacattggaaaatcactaacagcactgtgaagttttctaaggtg
gacagcaggaagcctgtccttttcctatcctctccctcagcccctcttcc
cccacctgtgtaggattttgaggtcgaatgtgcattgtgcactgctgctg
caaggtagctcttccctgtggctgtgctgaagcagctggccagggaagcc
tgggagctgaggctccagcctgtggattctctttcctcagactttagtct
gcaccagggagtggtgttctctcctgtggatgtgtgtatatatattcttt
actttatactttgttcacgtagttcggtgcattcttccaggccttctgga
tgggcgctttagcctagacatttatttcggcatattgtcatcttgggctg
catgcctgtcctctcttgtttctgtgtcctcaccatgcccttcccagctt
cctgttagccaaagggaatcactctttctgaaccaaaagctctcagagca
gagctgaacctcccagaaaatgctcttctctacctaatgcgacagatggg
ggtgggcccgatgctaaacagcactgtagaggtggcctaatggaccggaa
cccccaggcagaggtgggaggtaaggtcctagcaatgtgagggtccgtaa
gacccagttcttctcctgtgcagagggaacttttacttagctggaatggt
agcttgtggtccgagcatgtcgagggattcggggttcagagtgcacccca
gaacataggagatagctccatgtccccctttccctcaggagccttctcct
cactcctgctgcctagaacaaagggaggaggatctccactgcctggcctg
ctgcatcatgcccctgcctatctctactctccatttcctctgagccctcc
agaccctaggaggagtgagagggaggtccttcgaggcgtatctcgacatc
tgtcatcttcatttctgatgctggtcatattcctgggtcagcaacaccag
acatctcaaggctgggtgcccagcggtgaagtgcacaggaggactcagag
gttctagcaggggaggcttgtgatcaaggttccaggtcaagggtgctgcg
ctgaagggatcgcgcagatgggtgctagcttagggcaggctcagaacttc
cgggtcaggtccagcagctgactcaggccctgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4481690_4482891
seq2: B6Ng01-257D06.b_47_1246

seq1  GAATTCATTCTTTTTAATAGCTGAGTAGCTCTTCATTGTTTAAATGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTTTTAATAGCTGAGTAGCTCTTCATTGTTTAAATGTATT  50

seq1  ATAATTTCTGTATCCATTCCTCTGTTAACTGACATTTTGGTTCTTTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCTGTATCCATTCCTCTGTTAACTGACATTTTGGTTCTTTCCAG  100

seq1  CTACTGGCTATCATAATTAAGGCTGCTATAAACATAATGGAGGTTGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGCTATCATAATTAAGGCTGCTATAAACATAATGGAGGTTGTGCA  150

seq1  GATTCAAGGCAATTTATATACTACATAGCCTATAAATCAATGTTGTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAGGCAATTTATATACTACATAGCCTATAAATCAATGTTGTTACT  200

seq1  TGACTTGCAAGGGACACAGCAAGTCAGACTCATCTTTCATTTGGGGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGCAAGGGACACAGCAAGTCAGACTCATCTTTCATTTGGGGACAA  250

seq1  TAAGACTTAAGAGTAACTTTCAGGATTTGTCAAGGGTAAGATAAGCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTAAGAGTAACTTTCAGGATTTGTCAAGGGTAAGATAAGCTCAA  300

seq1  GTAGAGGACGAAAAGGGGAAGGTAGCTGTTATCAGTCTGCAATTAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGACGAAAAGGGGAAGGTAGCTGTTATCAGTCTGCAATTAGAGGA  350

seq1  CCCCCTAGAAAGGTTGTTGTTAGTTAAGTGCTATATGCCTCTACAAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTAGAAAGGTTGTTGTTAGTTAAGTGCTATATGCCTCTACAAATCC  400

seq1  TAGTATAAGGGGTCAGATTAACCCTGCATTGAAAACATTAACAAACCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAAGGGGTCAGATTAACCCTGCATTGAAAACATTAACAAACCAGG  450

seq1  AATGTGCTATGCTGAGCACTCACAGAGAATTATGAGGAGCTGACTAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTATGCTGAGCACTCACAGAGAATTATGAGGAGCTGACTAAGGC  500

seq1  TCCTTTTACAGCAAGTAAAAATAGACAAAGAGATCAAATATCCTAATACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTACAGCAAGTAAAAATAGACAAAGAGATCAAATATCCTAATACC  550

seq1  ACAAGATGATAAAACTGACAACTGTAGATTGCACTCAGTATCAGCGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGATAAAACTGACAACTGTAGATTGCACTCAGTATCAGCGAGTT  600

seq1  TAGTTTCTTGTGCATCTACAGATTGTCATGCAACATCTGCATCAGGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTTGTGCATCTACAGATTGTCATGCAACATCTGCATCAGGAACA  650

seq1  GTACATAAGGAGATGGCTGCTCAGTGGCATGACAAACAAACAAGAAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATAAGGAGATGGCTGCTCAGTGGCATGACAAACAAACAAGAAGAGC  700

seq1  CATAACCTCTACCCCTCTGATCTGGATGCTGAGACTTAAAAGTCTTAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCTCTACCCCTCTGATCTGGATGCTGAGACTTAAAAGTCTTAGTT  750

seq1  TGTCACCACCTGTCCCAGGACTGCTAGCATCATTTTTGCATATGTTTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCACCTGTCCCAGGACTGCTAGCATCATTTTTGCATATGTTTACC  800

seq1  CTAGCACTTGTCTACCTTTGGTACAAACACAGTGGACAGTCCCACAGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTTGTCTACCTTTGGTACAAACACAGTGGACAGTCCCACAGCCC  850

seq1  ACAGAGGAGGCTCCACTACCAGGCACTCACTCTATCACGACCAGGATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAGGCTCCACTACCAGGCACTCACTCTATCACGACCAGGATCTT  900

seq1  AGAATCCCAGGATCCCAGAATCCCAGGAGTTAGTCACACAAGAATCTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCAGGATCCCAGAATCCCAGGAGTTAGTCACACAAGAATCTTAG  950

seq1  -AGTCTCACAGGGAACTTTTCTCCCAGGAACTGCGACACACCCAAATCTC  999
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCACAGGGAACTTTTCTCCCAGGAACTGCGACACACCCAAATCTC  1000

seq1  AGGATCACAGGATCCC-GGAATTTTACACCTGTATCCTTATAGCTTTAAT  1048
      |||||||||||||||| |||||||||||||||||||||||||||||  ||
seq2  AGGATCACAGGATCCCGGGAATTTTACACCTGTATCCTTATAGCTT--AT  1048

seq1  GATCAAGGACAAGGATGCAGCTGGGACTG--AGGGTGTGAAGAAAATACA  1096
      |||| ||||| ||||||||||| ||||||   |||||||||| |||||||
seq2  GATC-AGGAC-AGGATGCAGCT-GGACTGGAGGGGTGTGAAG-AAATACA  1094

seq1  GGACATGTTCAATGCTGAGATCCTGTTGTCTAGACATTCTTAAGCTCTGC  1146
       |||||||   |||||||||| ||| ||||||||   || ||||||||||
seq2  -GACATGT--CATGCTGAGATTCTG-TGTCTAGAACATC-TAAGCTCTGC  1139

seq1  AGATGTGGACTCACAGATGC-ATCTTTGCA-CTCAAATGACATATA-CTG  1193
         ||| ||||   |||||| ||||||||| |||||   ||||||| |||
seq2  GAGTGT-GACTTCAAGATGCAATCTTTGCACCTCAATGCACATATACCTG  1188

seq1  ---ATTTTAAAA  1202
          ||||||||
seq2  GAAGTTTTAAAA  1200

seq1: chr14_4575986_4577170
seq2: B6Ng01-257D06.g_64_1248 (reverse)

seq1  CCCCAGGGGCTGTGGTCAGCTGCTGGGCTCTG-CCCGAAAG-TCTGAGCC  48
      |||||||| |||  |||||||||||| | ||| |||| ||| |||||| |
seq2  CCCCAGGGCCTG-AGTCAGCTGCTGGAC-CTGACCCGGAAGTTCTGAG-C  47

seq1  CTGCCCCTAGCTAGCA-CCATCTTCCGCGATCCCCTCAGCGCAGCACCCT  97
      ||||||  |||||||| ||||| | ||||||||| |||||||||||||||
seq2  CTGCCCTAAGCTAGCACCCATC-TGCGCGATCCCTTCAGCGCAGCACCCT  96

seq1  GGACCCGGGACCCTGGATCACAAGCCTCCCCTGCCTAG-ACCTCTTGGGT  146
       || || ||| ||| |||||||||||||||||| |||| ||||| || ||
seq2  TGA-CCTGGAACCTTGATCACAAGCCTCCCCTG-CTAGAACCTC-TGAGT  143

seq1  CCT-CTGTGCACTTCACGCCTGGGCACCCAGCCTTGGGATGTTCTGGTGT  195
      ||| |||||||||||||  ||||||||||||||||| |||| ||||||||
seq2  CCTCCTGTGCACTTCACCGCTGGGCACCCAGCCTTGAGATG-TCTGGTGT  192

seq1  TGCTGACCCAGG-ATATGACCAGCATCAG-AATG-AGATGACAGATGTCG  242
      |||||||||||| |||||||||||||||| |||| |||||||||||||||
seq2  TGCTGACCCAGGAATATGACCAGCATCAGAAATGAAGATGACAGATGTCG  242

seq1  AGATACGCCTCGAAGGACCTCCCTCTCACTCCTCCTAGGGTCTGGAGGGC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACGCCTCGAAGGACCTCCCTCTCACTCCTCCTAGGGTCTGGAGGGC  292

seq1  TCAGAGGAAATGGAGAGTAGAGATAGGCAGGGGCATGATGCAGCAGGCCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAAATGGAGAGTAGAGATAGGCAGGGGCATGATGCAGCAGGCCA  342

seq1  GGCAGTGGAGATCCTCCTCCCCTTGTTCTAGGCAGCAGGAGTGAGGAGAA  392
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCAGTGGAGATCCTCCTCCCTTTGTTCTAGGCAGCAGGAGTGAGGAGAA  392

seq1  GGCTCCTGAGGGAAAGGGGGACATGGAGCTATCTCCTATGTTCTGGGGTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGAGGGAAAGGGGGACATGGAGCTATCTCCTATGTTCTGGGGTG  442

seq1  CACTCTGAACCCCGAATCCCTCGACATGCTCGGACCACAAGCTACCATTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGAACCCCGAATCCCTCGACATGCTCGGACCACAAGCTACCATTC  492

seq1  CAGCTAAGTAAAAGTTCCCTCTGCACAGGAGAAGAACTGGGTCTTACGGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGTAAAAGTTCCCTCTGCACAGGAGAAGAACTGGGTCTTACGGA  542

seq1  CCCTCACATTGCTAGGACCTTACCTCCCACCTCTGCCTGGGGGTTCCGGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACATTGCTAGGACCTTACCTCCCACCTCTGCCTGGGGGTTCCGGT  592

seq1  CCATTAGGCCACCTCTACAGTGCTGTTTAGCATCGGGCCCACCCCCATCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGGCCACCTCTACAGTGCTGTTTAGCATCGGGCCCACCCCCATCT  642

seq1  GTCGCATTAGGTAGAGAAGAGCATTTTCTGGGAGGTTCAGCTCTGCTCTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCATTAGGTAGAGAAGAGCATTTTCTGGGAGGTTCAGCTCTGCTCTG  692

seq1  AGAGCTTTTGGTTCAGAAAGAGTGATTCCCTTTGGCTAACAGGAAGCTGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTTGGTTCAGAAAGAGTGATTCCCTTTGGCTAACAGGAAGCTGG  742

seq1  GAAGGGCATGGTGAGGACACAGAAACAAGAGAGGACAGGCATGCAGCCCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCATGGTGAGGACACAGAAACAAGAGAGGACAGGCATGCAGCCCA  792

seq1  AGATGACAATATGCCGAAATAAATGTCTAGGCTAAAGCGCCCATCCAGAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACAATATGCCGAAATAAATGTCTAGGCTAAAGCGCCCATCCAGAA  842

seq1  GGCCTGGAAGAATGCACCGAACTACGTGAACAAAGTATAAAGTAAAGAAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGAAGAATGCACCGAACTACGTGAACAAAGTATAAAGTAAAGAAT  892

seq1  ATATATACACACATCCACAGGAGAGAACACCACTCCCTGGTGCAGACTAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACACACATCCACAGGAGAGAACACCACTCCCTGGTGCAGACTAA  942

seq1  AGTCTGAGGAAAGAGAATCCACAGGCTGGAGCCTCAGCTCCCAGGCTTCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGGAAAGAGAATCCACAGGCTGGAGCCTCAGCTCCCAGGCTTCC  992

seq1  CTGGCCAGCTGCTTCAGCACAGCCACAGGGAAGAGCTACCTTGCAGCAGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAGCTGCTTCAGCACAGCCACAGGGAAGAGCTACCTTGCAGCAGC  1042

seq1  AGTGCACAATGCACATTCGACCTCAAAATCCTACACAGGTGGGGGAAGAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACAATGCACATTCGACCTCAAAATCCTACACAGGTGGGGGAAGAG  1092

seq1  GGGCTGAGGGAGAGGATAGGAAAAGGACAGGCTTCCTGCTGTCCACCTTA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGGGAGAGGATAGGAAAAGGACAGGCTTCCTGCTGTCCACCTTA  1142

seq1  GAAAACTTCACAGTGCTGTTAGTGATTTTCCAATGTTGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTCACAGTGCTGTTAGTGATTTTCCAATGTTGAATTC  1185