BAC Information

Click to search

BAC

Clone NameB6Ng01-257G23
Chromosome14 (Build37)
Map Location 89,528,917 - 89,530,156
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257G23.bB6Ng01-257G23.g
ACCGA063135GA063136
length1,2271,205
definitionB6Ng01-257G23.b B6Ng01-257G23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ggaattccatatagtcaccttggtttattgaaatattttaagatgtgtta
acatatggtttagtaacatacagtgtgtcttcccaagtacattttccgaa
ggcttgattacagtacttaaactcatgtaacttgatttactaaagagcta
atatttccaaacccgaaagctcttattattaattattactattatcatta
ttattatctttaacttttttttaatatccagtcattatctgctcccccat
gttctacccacctatagttcctcatccctttcctcctcactctgtctcca
agaggatgtcctcacaccccatatcccccacaccctctagacctctccat
tccctgtagcctcaagtctctcaaatgttagatgcatctcctctcactga
ggccagactaggtagtcctttgctgaatatgtgtcaggggcctcacacta
gctagtgtaggctgcctggttattgcctcagtgtctgagagttttcaggg
atacaggtttgttgagactgtcctcctatggggttgttctcctcctcagc
tttttccagcactttttgtaatacaagtgagctccattgcagcttctgat
acacattttatttctttatgccaaattcacctccttagaacatgaattac
taggatatcaactcctctaactctctcttctctctctctctttctctctc
tcttcctctctctatttctctctcaaaaatatatatatacatttacatac
taaatagttatataaatatttaatgcatatttgtatatatacacaaatac
atgcatatatcttatatataatcatttatattttaatatagctatacaaa
tcacatgtagtcataattccaaattttatttattttagcagcgtgtgtat
ggcattatacggatctgtagctataaaatggttctgtataattttatttt
taaaatacataatagatacgatttttttcttagacaccacatagacaaga
actggagtattaaacaataattctaggaatggaggactaaaattccatcc
aggcaattccctccgaattgcctacttaggcagaggtagacccaccaaat
tggatctcattttcaatttgaagttttgttatacttacaggattcattaa
tcggattcaagaagaatatatattttgccgtatatcatggaatggaacca
tagattggccaattgaaggttcgtgaa

gaattcagtgagaaggttacctattcagtaacattcaaattcacttctag
tagagacagtgaaactaattaggcattacaaagagcagagctagaataac
tcagggctagtctgcagagtgattacttaggacagtagccaagccaagtc
ttacccaaacaaggggaatacacaatgacctagcaaataggtgggttaac
catgaaagagttagggaatccccctggttcaggtttcttcactaggtcca
aaggaacagtataatcaggcatttactaagaacccctggtggttggttta
acaatagactagctttatacccatccccattctaagtggtaatctgaggc
cttgccctgccatcttttgatgtatgcattccttttgttttgtgtcactc
taactctgtgaatgtgtttgcctggcttttcttgtttttcttctgtataa
aaaagtgtggtgttcgtttggacaacacacaaagattcaacacactctca
tgtcgtgtctgtttgtcactcactgactctatgtctgagaccttgattga
ggagggcccacagagcccccatctgtggcaatcctcttgtttttcaatag
aagcacacatcttcattaagagaaaatagcagttattacaaagaacaaga
cctctagttcagaactctatagagttttattgagtttttcataccttcat
attgaaactttagtagtgtgaattgcactataggactagaaatttcaatt
tggccaatttagttttgggtaatagatggaaaacaggtattatatgttaa
tagtttcaaagctaccactcttctctgctgttagattaccctttagttgg
aagaatacattttcccaaaatgaagaagtatgcagacatacttaaaaata
tcaagagtgaaatatcaagaagggctcttgtttgtcagacatgtggaaat
gtatataatctaagtgccactcaaatgcgcaagcctcaaatatccacttc
tggatgaaaagactatagtaaaggaagtcttactttaaaataggttttga
gtcaaatatcatagccagggttatggtaggattcatgtgtctgataacag
gattgccttatctaaggtcaatgtaaatctattacctgaattcagagaac
aggctatcagtactttgctagattggcagagatacataaaggtctatcat
catag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89528917_89530156
seq2: B6Ng01-257G23.b_48_1273

seq1  GAATTCCATATAGTCACCTTGGTTTATTGAAATATTTTAAGATGTGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATAGTCACCTTGGTTTATTGAAATATTTTAAGATGTGTTAA  50

seq1  CATATGGTTTAGTAACATACAGTGTGTCTTCCCAAGTACATTTTCCGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGTTTAGTAACATACAGTGTGTCTTCCCAAGTACATTTTCCGAAG  100

seq1  GCTTGATTACAGTACTTAAACTCATGTAACTTGATTTACTAAAGAGCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATTACAGTACTTAAACTCATGTAACTTGATTTACTAAAGAGCTAA  150

seq1  TATTTCCAAACCCGAAAGCTCTTATTATTAATTATTACTATTATCATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCAAACCCGAAAGCTCTTATTATTAATTATTACTATTATCATTAT  200

seq1  TATTATCTTTAACTTTTTTTTAATATCCAGTCATTATCTGCTCCCCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTTTAACTTTTTTTTAATATCCAGTCATTATCTGCTCCCCCATG  250

seq1  TTCTACCCACCTATAGTTCCTCATCCCTTTCCTCCTCACTCTGTCTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCCACCTATAGTTCCTCATCCCTTTCCTCCTCACTCTGTCTCCAA  300

seq1  GAGGATGTCCTCACACCCCATATCCCCCACACCCTCTAGACCTCTCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGTCCTCACACCCCATATCCCCCACACCCTCTAGACCTCTCCATT  350

seq1  CCCTGTAGCCTCAAGTCTCTCAAATGTTAGATGCATCTCCTCTCACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAGCCTCAAGTCTCTCAAATGTTAGATGCATCTCCTCTCACTGAG  400

seq1  GCCAGACTAGGTAGTCCTTTGCTGAATATGTGTCAGGGGCCTCACACTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACTAGGTAGTCCTTTGCTGAATATGTGTCAGGGGCCTCACACTAG  450

seq1  CTAGTGTAGGCTGCCTGGTTATTGCCTCAGTGTCTGAGAGTTTTCAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTAGGCTGCCTGGTTATTGCCTCAGTGTCTGAGAGTTTTCAGGGA  500

seq1  TACAGGTTTGTTGAGACTGTCCTCCTATGGGGTTGTTCTCCTCCTCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTTTGTTGAGACTGTCCTCCTATGGGGTTGTTCTCCTCCTCAGCT  550

seq1  TTTTCCAGCACTTTTTGTAATACAAGTGAGCTCCATTGCAGCTTCTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGCACTTTTTGTAATACAAGTGAGCTCCATTGCAGCTTCTGATA  600

seq1  CACATTTTATTTCTTTATGCCAAATTCACCTCCTTAGAACATGAATTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTATTTCTTTATGCCAAATTCACCTCCTTAGAACATGAATTACT  650

seq1  AGGATATCAACTCCTCTAACTCTCTCTTCTCTCTCTCTCTTTCTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATCAACTCCTCTAACTCTCTCTTCTCTCTCTCTCTTTCTCTCTCT  700

seq1  CTTCCTCTCTCTATTTCTCTCTCAAAAATATATATATACATTTACATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCTCTATTTCTCTCTCAAAAATATATATATACATTTACATACT  750

seq1  AAATAGTTATATAAATATTTAATGCATATTTGTATATATACACAAATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTATATAAATATTTAATGCATATTTGTATATATACACAAATACA  800

seq1  TGCATATATCTTATATATAATCATTTATATTTTAATATAGCTATACAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATATCTTATATATAATCATTTATATTTTAATATAGCTATACAAAT  850

seq1  CACATGTAGTCATAATTCCAAATTTTATTTATTTTAGCAGCGTGTGTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAGTCATAATTCCAAATTTTATTTATTTTAGCAGCGTGTGTATG  900

seq1  GCATTATACGGATCTGTAGCTATAAAATGGTTCTGTATAATTTTATTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATACGGATCTGTAGCTATAAAATGGTTCTGTATAATTTTATTTTT  950

seq1  AAAATACATAATAGATACGATTTTTTTCTTAGACA-CACATAGACAAGAA  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAATACATAATAGATACGATTTTTTTCTTAGACACCACATAGACAAGAA  1000

seq1  CTGGAGTATTAAACAAATAATTCTAGGAAATGAGGACTAAAAATTCCATC  1049
      |||||||||||||| ||||||||||||||  ||||||| |||||||||||
seq2  CTGGAGTATTAAAC-AATAATTCTAGGAATGGAGGACT-AAAATTCCATC  1048

seq1  AAGCAAATTTCCCCCCGAATTG-CTAACTAAGCAGA-GTAGACACACCAT  1097
       ||  || ||||| |||||||| |||  || ||||| |||||| ||||| 
seq2  CAGGCAA-TTCCCTCCGAATTGCCTACTTAGGCAGAGGTAGACCCACCAA  1097

seq1  ATTTGATCTTCATTTTTCATTTGTAAATTTTTGTTTATCTTACAGTATTC  1147
      ||| |||| |||||||  |||||  || |||||||   ||||||| ||||
seq2  ATTGGATC-TCATTTTCAATTTG--AAGTTTTGTTATACTTACAGGATTC  1144

seq1  ATTATATTGAGTTCTAAGAAG-ATAATTATTTTGCTGTTTATTTATTTCA  1196
      |||| || |  ||| |||||| |||  |||||||| |      ||| |||
seq2  ATTA-ATCGGATTC-AAGAAGAATATATATTTTGCCG------TATATCA  1186

seq1  TTGTAGTGTGGACCACAATAGATTGGCCATTTG-AGGTTCATGAA  1240
      | | |   ||||  || |||||||||||| ||| |||||| ||||
seq2  TGGAA---TGGA--ACCATAGATTGGCCAATTGAAGGTTCGTGAA  1226


| Home | SequenceCutter | Blast | Download |