BAC Information

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BAC

Clone NameB6Ng01-258L11
Chromosome14 (Build37)
Map Location 9,869,445 - 9,870,594
singlet/doubletsinglet
Overlap geneLOC100041948
Upstream geneAbhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258L11.bB6Ng01-258L11.g
ACCGA064084GA064085
length1,1401,201
definitionB6Ng01-258L11.b B6Ng01-258L11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggttgaagcctggatccctgaggtcataggaggaaccctgaca
ctgattcacatgtttggagcatagataaagaagctgctactcaataaaag
gggaagagtaggatagaggaggggccaatggaggggatcccagttaccaa
tgtatatatttacaggcaaatgtaaaaatatatacctatttgaaagacaa
atgtaaaataaaaatattaaagagggacagtgaaatggtttagtaggtaa
aggtacttagcctcaagcttgagctctattccatggactgcaataatttt
gagaaaaaatatgaattcatattcctttattattatttagtgattaagtt
ccaaacactctcttatacaatcacattttgtccatttattctattcatgt
caagataactcagggtaagacacaaaactgaaaagatatagtttatcacc
tgagattaacatgaaaatagataataattatataagtgagtggggaaaat
aaatactctcatgaaagtccaggcaagatgtagcaggaatccagaggaca
gagaactctaaatgattgtgtctctatttgatggaagaagatattgagct
ataaagaagttaaattaaaacaatccagtctagaggaactgaattccaga
acaggcaatcagatgttagtcatattaaataagcacattagccaaacagc
tcttagatggtaagctgaggccaaaactttagtcaaatgtgtaagttttc
tttacaatgtggaagcactggggatgacttggaaagctggataactattt
atcagcctaaaagttctcaaagttgccaataacaaccactccagatacag
aaaggcttcaaggtggtgcaaggtctcaaagggcagaagtggcaagcatg
aaaggggaaagtagtgtcaggggtgggatttcggtcttcacaagccttgt
taaaaggttcttcccaatctgtactcacagagctatttgctaccattggc
ctttatcactgtctttcagttacactgcaaataagaggtgaccagtcact
atttaagagaagcagaatctagtgtcaaaataactagcatagacagttct
ctagtttcaaggagcaaatgaaaaatacaagagacttgag
gaattctttgttcagttctaagccccattttttaatggggttatttgatt
ttctggagtccatcttcttgagttctttatatatattggatattagttcc
ctatctgatttaggataggtaacgatccttttccaatctgttagtggcct
gtttgtcttattgatgatgtcttttgccttacagaaggtttgcagtttca
tgaggtcccatttaccgattctcgatcttacagcacaagccattgctctt
ctattcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagatttaaccttagtacaaggagataggaatggatcagttcgt
attcttctacataataaccaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagcagggagcagtttcttaaaca
gaacttgaattgctcaggctctaagatcaacaattgataaattggacctc
atgaaactgaaaagctttatctgtaaggcaaaagacatattcaatatcac
aaaacagcaacctacagattggggaaaaaaatcttcactaaccccacatt
tgatagaaggctaatatctaaaatatataaagaactcaagaagctagcca
ccaaaaaaaagaaaaaatcaaacaacccaattaaaaaatggggtatagat
ctaaacagaatgttcacaacagaggaatcaagaatggtcaagaagcactt
aaagaaatgtccaaagtccttagtcatcagggaaacacaaatcaaaatga
ccccgagattccacctgtcaccaataaatggctaagatcaaaaacttagt
gacatcacatgtgggtgaggatatgaggaaagagaactctcctccattgc
tggtaggatgcacacaggtacatctactctggaaatcatctggaggttcc
tcagaaaatcggaaatagatctactgaagacccagctataccactctgag
tacccaaagattgtacaacaggttcagtgtcactatgttcataagttgcc
ttatctggaatgcgaagctggaaccacctggaatttcccaacagaaatgt
accagaatgtgttcatttacccaatgaaatgattattcacgctcatatta
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_9869445_9870594
seq2: B6Ng01-258L11.b_49_1188 (reverse)

seq1  CTCATGTCTCTTGTATTTTCTCATTTGCTCCTTGAAACTAGAGACCTGTC  50
      |||| |||||||||||||| |||||||||||||||||||||||| |||||
seq2  CTCAAGTCTCTTGTATTTT-TCATTTGCTCCTTGAAACTAGAGAACTGTC  49

seq1  CTTATGCTAGTTTAATTTTTGACACTAGATTCCTGCCTTCTCTTTAAATT  100
        ||||||||||    ||||||||||||||| ||| |||||| |||||| 
seq2  --TATGCTAGTT---ATTTTGACACTAGATT-CTG-CTTCTC-TTAAAT-  90

seq1  AGGTGACTGGTTCCACCTC-TATTTGCAGTGTAACTGAAAGACAGTGATA  149
        |||||||||  |||||| ||||||||||||||||||||||||||||||
seq2  -AGTGACTGGT--CACCTCTTATTTGCAGTGTAACTGAAAGACAGTGATA  137

seq1  AAGGCCAATGGTAGCAAATAGCTCTGTGAGTACAGATTGGGAAGAACCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAATGGTAGCAAATAGCTCTGTGAGTACAGATTGGGAAGAACCTT  187

seq1  TTAACAAGGCTTGTGAAGACCGAAATCCCACCCCTGACACTACTTTCCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAGGCTTGTGAAGACCGAAATCCCACCCCTGACACTACTTTCCCC  237

seq1  -TTCATGCTTGCCACTTCTGCCCTTTGAGACCTTGCACCACCTTGAAGCC  298
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCTTGCCACTTCTGCCCTTTGAGACCTTGCACCACCTTGAAGCC  287

seq1  -TTCTGTATCTGGAGTGGTTGTTATTGGCAACTTTGAGAACTTTTAGGCT  347
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTATCTGGAGTGGTTGTTATTGGCAACTTTGAGAACTTTTAGGCT  337

seq1  GATAAATAGTTATCCAGCTTTCCAAGTCATCCCCAGTGCTTCCACATTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATAGTTATCCAGCTTTCCAAGTCATCCCCAGTGCTTCCACATTGT  387

seq1  AAAGAAAACTTACACATTTGACTAAAGTTTTGGCCTCAGCTTACCATCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACTTACACATTTGACTAAAGTTTTGGCCTCAGCTTACCATCTA  437

seq1  AGAGCTGTTTGGCTAATGTGCTTATTTAATATGACTAACATCTGATTGCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTTTGGCTAATGTGCTTATTTAATATGACTAACATCTGATTGCC  487

seq1  TGTTCTGGAATTCAGTTCCTCTAGACTGGATTGTTTTAATTTAACTTCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGAATTCAGTTCCTCTAGACTGGATTGTTTTAATTTAACTTCTT  537

seq1  TATAGCTCAATATCTTCTTCCATCAAATAGAGACACAATCATTTAGAGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTCAATATCTTCTTCCATCAAATAGAGACACAATCATTTAGAGTT  587

seq1  CTCTGTCCTCTGGATTCCTGCTACATCTTGCCTGGACTTTCATGAGAGTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCTCTGGATTCCTGCTACATCTTGCCTGGACTTTCATGAGAGTA  637

seq1  TTTATTTTCCCCACTCACTTATATAATTATTATCTATTTTCATGTTAATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCCCCACTCACTTATATAATTATTATCTATTTTCATGTTAATC  687

seq1  TCAGGTGATAAACTATATCTTTTCAGTTTTGTGTCTTACCCTGAGTTATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGATAAACTATATCTTTTCAGTTTTGTGTCTTACCCTGAGTTATC  737

seq1  TTGACATGAATAGAATAAATGGACAAAATGTGATTGTATAAGAGAGTGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATGAATAGAATAAATGGACAAAATGTGATTGTATAAGAGAGTGTT  787

seq1  TGGAACTTAATCACTAAATAATAATAAAGGAATATGAATTCATATTTTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTTAATCACTAAATAATAATAAAGGAATATGAATTCATATTTTTT  837

seq1  CTCAAAATTATTGCAGTCCATGGAATAGAGCTCAAGCTTGAGGCTAAGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATTATTGCAGTCCATGGAATAGAGCTCAAGCTTGAGGCTAAGTA  887

seq1  CCTTTACCTACTAAACCATTTCACTGTCCCTCTTTAATATTTTTATTTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCTACTAAACCATTTCACTGTCCCTCTTTAATATTTTTATTTTA  937

seq1  CATTTGTCTTTCAAATAGGTATATATTTTTACATTTGCCTGTAAATATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCTTTCAAATAGGTATATATTTTTACATTTGCCTGTAAATATAT  987

seq1  ACATTGGTAACTGGGATCCCCTCCATTGGCCCCTCCTCTATCCTACTCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGTAACTGGGATCCCCTCCATTGGCCCCTCCTCTATCCTACTCTT  1037

seq1  CCCCTTTTATTGAGTAGCAGCTTCTTTATCTATGCTCCAAACATGTGAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTATTGAGTAGCAGCTTCTTTATCTATGCTCCAAACATGTGAAT  1087

seq1  CAGTGTCAGGGTTCCTCCTATGACCTCAGGGATCCAGGCTTCAACCTGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCAGGGTTCCTCCTATGACCTCAGGGATCCAGGCTTCAACCTGAA  1137

seq1  TTC  1150
      |||
seq2  TTC  1140