BAC Information

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BAC

Clone NameB6Ng01-258N10
Chromosome14 (Build37)
Map Location 117,746,039 - 117,747,202
singlet/doubletsinglet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258N10.bB6Ng01-258N10.g
ACCGA064174GA064175
length2421,178
definitionB6Ng01-258N10.b B6Ng01-258N10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aaggagctgaagtggatggtaaccacacaaaagaccaacagtgtcaatta
accctgacccctcggagctcccagagactaagccaccaaccaaagagcat
acaggagctggtccatggcccctggcatgtatgtagccttttctggcctc
agtgggagagagtaggtctaatcctgtagagacttgatgccctatggaag
ggggatggctgaggatgatctgggggtggtggggcaggggtg
gaattcactgcatccctgaactacataaaaacatagagctttgaatttgg
taaaactattttcatattttgtggtcgcatatacctgcaatcccagcact
caggaggcagaggtaggcagatctctgagactgaggccagcctggtcttc
agggtgagctctgggacagccaaagctatacagagaaaccctgtatccaa
acaataaaataataataataataataataataataataaatattaataat
attttcactacaaatcaaaacaaaattttactttaattttattttaattt
tattttaatgtctcatttgaataatttcaaggtagacattgcccattcaa
aagcaaacaaattggtcaggagagcactgcaaaatgatgaacaaattaat
atatcaaaaataacaaattgcaattatctctgatatgattaccatctaaa
aataaataactgcttgattgttaaaaccacaaatatttctctttcttctt
cctttgcaaaacacaaatccataaatattatgaggaaaacaaaacaataa
caataatgaataacaacccatttcaaacacagtgggtaataaatacagta
ctaaattactggaacttaattatacaagctcacatcatcatattactcct
agtatattgaataaaattacatttatattttaaggataaaatttttaatt
aacatatagtctgttattattgcatgctttgtctattcatggaaaagtgc
ttttcttttcctatgaaatcccagtaggtactgatttgttttgtcttaat
gaaaataattgttcttatatatcttctaatctaaggttttaaatacagtg
actttaataacttgaggagataaatactaaatttgtttcatgtatacagg
gcttctctgccctgaattcaaaatcccatgaagacttccacagagaatga
tcaggaaaggattcctaccatattttttttagcctgatcacattgatcat
gaaactgattcacctaaaccttagatgcattcctgtgtgccaattcagtt
tcaaatttaaatatttgttcaagtttcagagtggcgggtgataatacagg
atcttgccttaggcccaagccatgggaaaagaaccattctatagtccgaa
ttctgggtgggtctatccaatttcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117746039_117747202
seq2: B6Ng01-258N10.g_69_1246

seq1  GAATTCACTGCATCCCTGAACTACATAAAAACATAGAGCTTTGAATTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCATCCCTGAACTACATAAAAACATAGAGCTTTGAATTTGG  50

seq1  TAAAACTATTTTCATATTTTATGGTCGCATATACCTGCAATCCCAGCACT  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAAAACTATTTTCATATTTTGTGGTCGCATATACCTGCAATCCCAGCACT  100

seq1  CAGGAGGCAGAGGTAGGCAGATCTCTGAGACTGAGGCCAGCCTGGTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCAGAGGTAGGCAGATCTCTGAGACTGAGGCCAGCCTGGTCTTC  150

seq1  AGGGTGAGCTCTGGGACAGCCAAAGCTATACAGAGAAACCCTGTATCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGCTCTGGGACAGCCAAAGCTATACAGAGAAACCCTGTATCCAA  200

seq1  ACAATAAAATAATAATAATAATAATAATAATAATAATAAATATTAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAATAATAATAATAATAATAATAATAATAATAAATATTAATAAT  250

seq1  ATTTTCACTACAAATCAAAACAAAATTTTACTTTAATTTTATTTTAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACTACAAATCAAAACAAAATTTTACTTTAATTTTATTTTAATTT  300

seq1  TATTTTAATGTCTCATTTGAATAATTTCAAGGTAGACATTGCCCATTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATGTCTCATTTGAATAATTTCAAGGTAGACATTGCCCATTCAA  350

seq1  AAGCAAACAAATTGGTCAGGAGAGCACTGCAAAATGATGAACAAATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACAAATTGGTCAGGAGAGCACTGCAAAATGATGAACAAATTAAT  400

seq1  ATATCAAAAATAACAAATTGCAATTATCTCTGATATGATTACCATCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAAATAACAAATTGCAATTATCTCTGATATGATTACCATCTAAA  450

seq1  AATAAATAACTGCTTGATTGTTAAAACCACAAATATTTCTCTTTCTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAACTGCTTGATTGTTAAAACCACAAATATTTCTCTTTCTTCTT  500

seq1  CCTTTGCAAAACACAAATCCATAAATATTATGAGGAAAACAAAACAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCAAAACACAAATCCATAAATATTATGAGGAAAACAAAACAATAA  550

seq1  CAATAATGAATAACAACCCATTTCAAACACAGTGGGTAATAAATACAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATGAATAACAACCCATTTCAAACACAGTGGGTAATAAATACAGTA  600

seq1  CTAAATTACTGGAACTTAATTATACAAGCTCACATCATCATATTACTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTACTGGAACTTAATTATACAAGCTCACATCATCATATTACTCCT  650

seq1  AGTATATTGAATAAAATTACATTTATATTTTAAGGATAAAATTTTTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTGAATAAAATTACATTTATATTTTAAGGATAAAATTTTTAATT  700

seq1  AACATATAGTCTGTTATTATTGCATGCTTTGTCTATTCATGGAAAAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATAGTCTGTTATTATTGCATGCTTTGTCTATTCATGGAAAAGTGC  750

seq1  TTTTCTTTTCCTATGAAATCCCAGTAGGTACTGATTTGTTTTGTCTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCCTATGAAATCCCAGTAGGTACTGATTTGTTTTGTCTTAAT  800

seq1  GAAAATAATTGTTCTTATATATCTTCTAATCTAAGGTTTTAAATACAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATTGTTCTTATATATCTTCTAATCTAAGGTTTTAAATACAGTG  850

seq1  ACTTTAATAACTTGAGGAGATAAATACT-AATTTGTTTCATGTATACAGG  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACTTTAATAACTTGAGGAGATAAATACTAAATTTGTTTCATGTATACAGG  900

seq1  GCTTCTCTGCCCTGAATTCAAAATCCCATGAAGACTTCCACAGAGAATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTGCCCTGAATTCAAAATCCCATGAAGACTTCCACAGAGAATGA  950

seq1  TCAGGAAA-GAATCCTACCATATTTTTTTTAGCCTGATCACATTGATCAT  998
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAAGGATTCCTACCATATTTTTTTTAGCCTGATCACATTGATCAT  1000

seq1  GAAACTGATTCACCTAAA-CTTAGATGCATTCCTGTGTTGCCATTCAGTT  1047
      |||||||||||||||||| |||||||||||||||||||  | ||||||||
seq2  GAAACTGATTCACCTAAACCTTAGATGCATTCCTGTGTGCCAATTCAGTT  1050

seq1  TTCAAATTAAATATTTGTTCAGGTTTTCAGAGTG--CGGTGATAATTACA  1095
      |  || ||||||||||||||| | ||||||||||   |||||||| ||||
seq2  TCAAATTTAAATATTTGTTCAAG-TTTCAGAGTGGCGGGTGATAA-TACA  1098

seq1  -GATCTTGC--TAAGCCCA--GCATGG--AAAGACCCA-TCTATAGTCC-  1136
       ||||||||  || |||||   |||||  ||||| ||| |||||||||| 
seq2  GGATCTTGCCTTAGGCCCAAGCCATGGGAAAAGAACCATTCTATAGTCCG  1148

seq1  AGATCT-GGTGGGTC-ATCCATTTCCATTT  1164
      |  ||| |||||||| ||||| || |||||
seq2  AATTCTGGGTGGGTCTATCCAATTTCATTT  1178