BAC Information

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BAC

Clone NameB6Ng01-258O23
Chromosome14 (Build37)
Map Location 55,681,195 - 55,870,289
singlet/doubletdoublet
Overlap geneZfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720
Upstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn
Downstream geneLOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258O23.bB6Ng01-258O23.g
ACCGA064246GA064247
length7591,034
definitionB6Ng01-258O23.b B6Ng01-258O23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,681,195 - 55,681,949)(55,869,264 - 55,870,289)
sequence
gaattcaatgggggaaatgggggaacaaagcagacatgtatgccagagtg
ggggtgcatctgcaaggggctgagaatgagggtcagtgtgtttgtggggc
ggggaggaggcaggactctgctggaggtggggtgtgtgaagcccacggaa
ggtgggaattgacagactcccatgaggtgggcagagctgaaggttggggt
gagggaaccctgaggccctctcttgtccccatcttggtttatctgtttat
aaagctagaagtgtagaggtagtagtagtttttgggttggggtccgtgtg
aggtaatcttgcttcctctttggcaaaagccacagcagccgggacagcag
tggcgctgttggtaacggtgatgggagggcctcctgggggcggggctgcc
ttgcgcctgtgggctgaggagcgcagatgggaggctagggcttcacgccc
actcagcagcacctcgcaggccaggcagtggtaggtgcagataggcaccc
gcaatggggcgggcatggaggccccagagccccgcccaaagaagcagaag
gatctctggtgggcagtagctggggcctcgccgtcaaatgccatcttgca
ctggcggcacaaagtagcggtgagtcacatccacggtggagatgccagtg
ctgcctgtcagcagctcatcagcctcactactttcccccttcccccgaag
ccggcagctcgggggggctttggagggggctgtggctgtaggctcggggg
cttggggtg
gaattctcttcatacaacttcatttttggaccatgatctgtcagacatgc
tattgcggaaggggacatctcttgttgcaggattttccctgtctaatcac
gttagggtagtgggaggcttgtgattgggcaggagaagggaggcggagcg
agaagttgagacagagagaggtctgaggaggaaagggaggcccagaatag
aggctgaccatggtgttatcaaaagattagataatgctttatcattatca
tttggctctgaaattattgtattgacatcttgtaaattgtgttcttattg
atacataaatctgattggctaattaagcattaagagtcttgattcttcca
ggtaattaggtgttgagatggctaaccaggggtgcatgaggcgttgcatg
aaaaaggagaggaacttgggggggggggtccgtctgagagatggcctggt
gggagccgtgtggcctagcagggctggtcagttggcgggccaagagactg
agtgagtgaggtcacctggcgcaggggctggctctagattttcccccgca
acagggccccactcctaagcaagaactaatgagtgctgagttatccccag
ggataaacgaagcctgttatccaatcccaagtggtcatttctgggattag
atacatacaaggaacactaagcagactaaccaggttgcatttatgtatct
ttgaattttcacatatatgcaatttaaaaagcagagagagagagagatgg
ggtacatggaaagggtgggacggaggaaagagaaggggaaatattgcaat
tatgtcttaattttaaaaaatagaaatatacatatttaattttttaagaa
agacgttttcaccttttaaccatacagaaatctccacctctttcgaagtg
tctgctctctgcactggtggggaaaatgaagattccagagaatgctgacc
tgtaagaaagaatgtgacttacaaggtaattcacatcgtcttacctttgc
cataggccttttctcatacccttcctgtcctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55681195_55681949
seq2: B6Ng01-258O23.b_52_810

seq1  GAATTCAATGGGGGAAATGGGGGAACAAAGCAGACATGTATGCCAGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGGGGAAATGGGGGAACAAAGCAGACATGTATGCCAGAGTG  50

seq1  GGGGTGCATCTGCAAGGGGCTGAGAATGAGGGTCAGTGTGTTTGTGGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCATCTGCAAGGGGCTGAGAATGAGGGTCAGTGTGTTTGTGGGGC  100

seq1  GGGGAGGAGGCAGGACTCTGCTGGAGGTGGGGTGTGTGAAGCCCACGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAGGCAGGACTCTGCTGGAGGTGGGGTGTGTGAAGCCCACGGAA  150

seq1  GGTGGGAATTGACAGACTCCCATGAGGTGGGCAGAGCTGAAGGTTGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAATTGACAGACTCCCATGAGGTGGGCAGAGCTGAAGGTTGGGGT  200

seq1  GAGGGAACCCTGAGGCCCTCTCTTGTCCCCATCTTGGTTTATCTGTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAACCCTGAGGCCCTCTCTTGTCCCCATCTTGGTTTATCTGTTTAT  250

seq1  AAAGCTAGAAGTGTAGAGGTAGTAGTAGTTTTTGGGTTGGGGTCCGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGAAGTGTAGAGGTAGTAGTAGTTTTTGGGTTGGGGTCCGTGTG  300

seq1  AGGTAATCTTGCTTCCTCTTTGGCAAAAGCCACAGCAGCCGGGACAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATCTTGCTTCCTCTTTGGCAAAAGCCACAGCAGCCGGGACAGCAG  350

seq1  TGGCGCTGTTGGTAACGGTGATGGGAGGGCCTCCTGGGGGCGGGGCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCTGTTGGTAACGGTGATGGGAGGGCCTCCTGGGGGCGGGGCTGCC  400

seq1  TTGCGCCTGTGGGCTGAGGAGCGCAGATGGGAGGCTAGGGCTTCACGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGCCTGTGGGCTGAGGAGCGCAGATGGGAGGCTAGGGCTTCACGCCC  450

seq1  ACTCAGCAGCACCTCGCAGGCCAGGCAGTGGTAGGTGCAGATAGGCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCAGCACCTCGCAGGCCAGGCAGTGGTAGGTGCAGATAGGCACCC  500

seq1  GCAATGGGGCGGGCATGGAGGCCCCAGAGCCCCGCCCAAAGAAGCAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGGGCGGGCATGGAGGCCCCAGAGCCCCGCCCAAAGAAGCAGAAG  550

seq1  GATCTCTGGTGGGCAGTAGCTGGGGCCTCGCCGTCAAATGCCATCTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGGTGGGCAGTAGCTGGGGCCTCGCCGTCAAATGCCATCTTGCA  600

seq1  CTGGCGGCAC-AAGTAGCGGTGAGTCACATCCACGGTGGAGATGCCAGTG  649
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGGCACAAAGTAGCGGTGAGTCACATCCACGGTGGAGATGCCAGTG  650

seq1  CTGCCTGTCAGCAGCTCATCAGCCTCACTACTTT-CCCCTTCCCCCGAAG  698
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGCCTGTCAGCAGCTCATCAGCCTCACTACTTTCCCCCTTCCCCCGAAG  700

seq1  CCGGCAGCTC-GGGGGGCTTTGGA-GGGGCTGTGGCTGTAGGCTCGGGGG  746
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  CCGGCAGCTCGGGGGGGCTTTGGAGGGGGCTGTGGCTGTAGGCTCGGGGG  750

seq1  CTTGGGGTG  755
      |||||||||
seq2  CTTGGGGTG  759

seq1: chr14_55869264_55870289
seq2: B6Ng01-258O23.g_67_1100 (reverse)

seq1  AACAAGACAGG-AGGGTATGAGAAAAGGCCCTTATGGCAAAGGTAAGACC  49
      |||| |||||| ||||||||||||||||||  |||||||||||||||| |
seq2  AACAGGACAGGAAGGGTATGAGAAAAGGCC--TATGGCAAAGGTAAGA-C  47

seq1  GATGTGAA-TAACTTGTAAGTCACAT--CTTCCTACAGGTCAGCATCCTC  96
      |||||||| || ||||||||||||||   ||| ||||||||||||| |||
seq2  GATGTGAATTACCTTGTAAGTCACATTCTTTCTTACAGGTCAGCATTCTC  97

seq1  TGTGATC-TCA-TTTCCCCA-CAGTGCAGAGAGCAGACACTTCG-AAGA-  141
      ||  ||| ||| |||||||| ||||||||||||||||||||||| |||| 
seq2  TGGAATCTTCATTTTCCCCACCAGTGCAGAGAGCAGACACTTCGAAAGAG  147

seq1  GTTGAGATTTCTTGTAATGGTT-AAAGGTG-AAACGTCTTTC-TAAAAAA  188
      || |||||||| ||| |||||| ||||||| ||||||||||| |||||||
seq2  GTGGAGATTTC-TGT-ATGGTTAAAAGGTGAAAACGTCTTTCTTAAAAAA  195

seq1  TTAAATATGTATATTTCTATTTTTT-AAATTAAGACATAATTGCAATATT  237
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTAAATATGTATATTTCTATTTTTTAAAATTAAGACATAATTGCAATATT  245

seq1  TCCCCTTCTCTTTCCTCCGTCCCACCCCTTCCATGTACCCCATCTCTCTC  287
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCCCTTCTCTTTCCTCCGTCCCACCCTTTCCATGTACCCCATCTCTCTC  295

seq1  TCTCTCTGCTTTTTAAATTGCATATATGTGAAAATTCAAAGATACATAAA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGCTTTTTAAATTGCATATATGTGAAAATTCAAAGATACATAAA  345

seq1  TGCAACCTGGTTAGTCTGCTTAGTGTTCCTTGTATGTATCTAATCCCAGA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCTGGTTAGTCTGCTTAGTGTTCCTTGTATGTATCTAATCCCAGA  395

seq1  AATGACCACTTGGGATTGGATAACAGGCTTCGTTTATCCCTGGGGATAAC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCACTTGGGATTGGATAACAGGCTTCGTTTATCCCTGGGGATAAC  445

seq1  TCAGCACTCATTAGTTCTTGCTTAGGAGTGGGGCCCTGTTGCGGGGGAAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACTCATTAGTTCTTGCTTAGGAGTGGGGCCCTGTTGCGGGGGAAA  495

seq1  ATCTAGAGCCAGCCCCTGCGCCAGGTGACCTCACTCACTCAGTCTCTTGG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAGCCAGCCCCTGCGCCAGGTGACCTCACTCACTCAGTCTCTTGG  545

seq1  CCCGCCAACTGACCAGCCCTGCTAGGCCACACGGCTCCCACCAGGCCATC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCAACTGACCAGCCCTGCTAGGCCACACGGCTCCCACCAGGCCATC  595

seq1  TCTCAGACGGACCCCCCCCCCCAAGTTCCTCTCCTTTTTCATGCAACGCC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGACGGACCCCCCCCCCCAAGTTCCTCTCCTTTTTCATGCAACGCC  645

seq1  TCATGCACCCCTGGTTAGCCATCTCAACACCTAATTACCTGGAAGAATCA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCACCCCTGGTTAGCCATCTCAACACCTAATTACCTGGAAGAATCA  695

seq1  AGACTCTTAATGCTTAATTAGCCAATCAGATTTATGTATCAATAAGAACA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTAATGCTTAATTAGCCAATCAGATTTATGTATCAATAAGAACA  745

seq1  CAATTTACAAGATGTCAATACAATAATTTCAGAGCCAAATGATAATGATA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTACAAGATGTCAATACAATAATTTCAGAGCCAAATGATAATGATA  795

seq1  AAGCATTATCTAATCTTTTGATAACACCATGGTCAGCCTCTATTCTGGGC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTATCTAATCTTTTGATAACACCATGGTCAGCCTCTATTCTGGGC  845

seq1  CTCCCTTTCCTCCTCAGACCTCTCTCTGTCTCAACTTCTCGCTCCGCCTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTCCTCCTCAGACCTCTCTCTGTCTCAACTTCTCGCTCCGCCTC  895

seq1  CCTTCTCCTGCCCAATCACAAGCCTCCCACTACCCTAACGTGATTAGACA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCTGCCCAATCACAAGCCTCCCACTACCCTAACGTGATTAGACA  945

seq1  GGGAAAATCCTGCAACAAGAGATGTCCCCTTCCGCAATAGCATGTCTGAC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATCCTGCAACAAGAGATGTCCCCTTCCGCAATAGCATGTCTGAC  995

seq1  AGATCATGGTCCAAAAATGAAGTTGTATGAAGAGAATTC  1026
      |||||||||||||||||||||||||||||||||||||||
seq2  AGATCATGGTCCAAAAATGAAGTTGTATGAAGAGAATTC  1034