BAC Information

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BAC

Clone NameB6Ng01-259A20
Chromosome14 (Build37)
Map Location 43,272,988 - 43,410,821
singlet/doubletdoublet
Overlap geneEG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209
Upstream geneLOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031
Downstream gene1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259A20.bB6Ng01-259A20.g
ACCGA064336GA064337
length1,1941,149
definitionB6Ng01-259A20.b B6Ng01-259A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,272,988 - 43,274,159)(43,409,634 - 43,410,821)
sequence
gaattctggattagctcagaggtgactagcccaggagtattgaggggcct
tctgttggagacttagatggcaaggctctgtaggcaaaggctttttctcc
atgtaacccacagttggtttgatgagagagacagtccttggttctaaact
gtttattgattgtttttcatggaaatgaaagcataacatgtcttgaggtt
agactagaagttaagtaccttctgaggaaggaatgtccaggaagagaagc
ttattgactgaaccctaacatcttctaggtacctcattagcagcgagaac
cctattctgttctaaatgaccacaggccatgttcctatgtagagattttg
gtcccatgaaagaggcatggtaggaagcaggttagacttttgccatctac
tgtgggtctgggacttccaacccactcaactttaccaaattctggacatg
gtagtctactgtcccaggtcttagtctgagatttattgatgtgaggagac
accaagacatatgtttagtatgtgagtctcaaagccaaccctccacactg
acacactgtttctaacaaggccacaactcctaaaagtaccacccccatat
tcaagccaccacactcctatgcaatctcccaagacatctacctcactctg
tcctactgttttcctttttctccttcacaaattatgtgttctattatttt
cttgaaatatcctcctataacccaacactagtgcattaccttctatggat
actgcagtttaaatgcacatctctagacattcaatgttaccatccacata
agacacatgatgtggtatttgtcttttttggggtgtgggttatatcactc
agaaatattaattcatgtatccattcattaacctgtaaatttcatttata
ttgtcacagttcattaccattgtgtatatggaccattatatttcattacc
ctttcatcagttatattacaatctgggtttgttttggatttcctgactat
tggtgaataaagcagccaaggaaacatggagcacacccggtcattgttct
taggaataatggcttttggctatatgcttctgaaaatagttgtctgatct
tgttgttcctcttgcctaagaaaggagacacccaagaactcagtgaatgg
tcttttaatgaaagtaccaatggggcttggtctaccattcagaa
gaattctactggttgtagtgtatagctgcagtcattcatttctccaagtt
gtagggttggacaaggtcactataagaaacatttgtttatggacaataag
agcttctatcatgctccaagctgagaacctaagaaacgtcactatttgca
gctaatgtaaaatgtgtagacttggggatgaacaaagctttgagttcatt
aggctcaacagccatttcagagagaagggagcaataccatactcaggtct
gtactgctgtgtgtagtacatgtcagaaaaagggagaggggagctatgtg
cttccaggacaaagcatcaagaacacttaggttgctagaatttgtattct
atactatattgtttatggtatattatattatatttatgctacaaaattat
tgttgtacatcaagaagacattcatcttcttaggagttgaaagacatgag
cagagattagatgatgttccgggtatgcaggggcagtgtatttccacaca
gaggtgtatgggcttcccctcttgctgaggttgcaccaggcagggcttca
gagaaggcagaagcacatccagagctgctcagcatagagcagaaaatgtc
taagactgtaaattaaaacttgtcctcacctgccaccaagaatatttaat
ggagggttgttaagtaaagttaaaaaactttgagcaaaatcctgtaacat
gtgtcatccttagtcttacaaagacttaatttacaaagcccccaaagaaa
catggcaacgcttgccttgataggctattacatctgaaactgcctttcta
ccttgtcttcacggttgaccacatgttgtaatttcagtgccactaaactg
cccctgttgttttgggttttgattgcttagggattagcgttttggttaca
ttagtgtgcagattgatttttatttctcttctttttctggtcactatttt
gatatttgctgagctatatacactgcatatactgatccaactgagtacag
agaggtcctttttaacccatactgatgaaagtctgcacttatgattaaaa
caacaacaaagaaacagttcaagcctacagtctcagccagcgtttagccg
gcttggtcactctgagcctcggatccagcagaatggattctgtaacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43272988_43274159
seq2: B6Ng01-259A20.b_45_1238

seq1  GAATTCTGGATTAGCTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGATTAGCTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCT  50

seq1  TCTGTTGGAGACTTAGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGAGACTTAGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCC  100

seq1  ATGTAACCCACAGTTGGTTTGATGAGAGAGACAGTCCTTGGTTCTAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACCCACAGTTGGTTTGATGAGAGAGACAGTCCTTGGTTCTAAACT  150

seq1  GTTTATTGATTGTTTTTCATGGAAATGAAAGCATAACATGTCTTGAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTGATTGTTTTTCATGGAAATGAAAGCATAACATGTCTTGAGGTT  200

seq1  AGACTAGAAGTTAAGTACCTTCTGAGGAAGGAATGTCCAGGAAGAGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGAAGTTAAGTACCTTCTGAGGAAGGAATGTCCAGGAAGAGAAGC  250

seq1  TTATTGACTGAACCCTAACATCTTCTAGGTACCTCATTAGCAGCGAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGACTGAACCCTAACATCTTCTAGGTACCTCATTAGCAGCGAGAAC  300

seq1  CCTATTCTGTTCTAAATGACCACAGGCCATGTTCCTATGTAGAGATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCTGTTCTAAATGACCACAGGCCATGTTCCTATGTAGAGATTTTG  350

seq1  GTCCCATGAAAGAGGCATGGTAGGAAGCAGGTTAGACTTTTGCCATCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGAAAGAGGCATGGTAGGAAGCAGGTTAGACTTTTGCCATCTAC  400

seq1  TGTGGGTCTGGGACTTCCAACCCACTCAACTTTACCAAATTCTGGACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCTGGGACTTCCAACCCACTCAACTTTACCAAATTCTGGACATG  450

seq1  GTAGTCTACTGTCCCAGGTCTTAGTCTGAGATTTATTGATGTGAGGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTACTGTCCCAGGTCTTAGTCTGAGATTTATTGATGTGAGGAGAC  500

seq1  ACCAAGACATATGTTTAGTATGTGAGTCTCAAAGCCAACCCTCCACACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGACATATGTTTAGTATGTGAGTCTCAAAGCCAACCCTCCACACTG  550

seq1  ACACACTGTTTCTAACAAGGCCACAACTCCTAAAAGTACCACCCCCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGTTTCTAACAAGGCCACAACTCCTAAAAGTACCACCCCCATAT  600

seq1  TCAAGCCACCACACTCCTATGCAATCTCCCAAGACATCTACCTCACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCACCACACTCCTATGCAATCTCCCAAGACATCTACCTCACTCTG  650

seq1  TCCTACTGTTTTCCTTTTTCTCCTTCACAAATTATGTGTTCTATTATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGTTTTCCTTTTTCTCCTTCACAAATTATGTGTTCTATTATTTT  700

seq1  CTTGAAATATCCTCCTATAACCCAACACTAGTGCATTACCTTCTATGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATATCCTCCTATAACCCAACACTAGTGCATTACCTTCTATGGAT  750

seq1  ACTGCAGTTTAAATGCACATCTCTAGACATTCAATGTTACCATCCACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTTTAAATGCACATCTCTAGACATTCAATGTTACCATCCACATA  800

seq1  AGACACATGATGTGGTATTTGTCTTTTT--GGGTGTGGGTTATATCACTC  848
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  AGACACATGATGTGGTATTTGTCTTTTTTGGGGTGTGGGTTATATCACTC  850

seq1  AGAAATATT-ATTCATGTATCCATTCATTAACCTGTAAATTTCATTTATA  897
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTAATTCATGTATCCATTCATTAACCTGTAAATTTCATTTATA  900

seq1  TTGTCACAGTTCATTACCATTGTGTATATGAACCA-TATA-TTCATTACC  945
      |||||||||||||||||||||||||||||| |||| |||| |||||||||
seq2  TTGTCACAGTTCATTACCATTGTGTATATGGACCATTATATTTCATTACC  950

seq1  CTTTCATCAGTTATATTAC-ATCTGGG-TTGTTTT-GATTTCCTGACTAT  992
      ||||||||||||||||||| ||||||| ||||||| ||||||||||||||
seq2  CTTTCATCAGTTATATTACAATCTGGGTTTGTTTTGGATTTCCTGACTAT  1000

seq1  T-GTGAATAAAGCAGC--AAGAAACAT-GAGCACACCCGGGTCATTG-TC  1037
      | ||||||||||||||  | ||||||| |||||||||| |||||||| ||
seq2  TGGTGAATAAAGCAGCCAAGGAAACATGGAGCACACCC-GGTCATTGTTC  1049

seq1  TTAGG-ATAAT-GCCTTTGGCTATATGC-TCTG-AAATAG-TGTCTGATT  1082
      ||||| ||||| || ||||||||||||| |||| |||||| |||||||| 
seq2  TTAGGAATAATGGCTTTTGGCTATATGCTTCTGAAAATAGTTGTCTGATC  1099

seq1  CTG-TGTT-CTCTTGC--TAGAAA-GAGACACC--AGGAC-CA-TGATAG  1123
       || |||| |||||||   ||||| ||||||||  || || || |||  |
seq2  TTGTTGTTCCTCTTGCCTAAGAAAGGAGACACCCAAGAACTCAGTGAATG  1149

seq1  GTCCTTTTAATGAAAGTATTTAAATGGGGGCCTGCT-TACCATTTCAGAA  1172
      || |||||||||||||||    ||| ||||| || | ||||| |||||||
seq2  GT-CTTTTAATGAAAGTA--CCAAT-GGGGCTTGGTCTACCA-TTCAGAA  1194

seq1: chr14_43409634_43410821
seq2: B6Ng01-259A20.g_66_1214 (reverse)

seq1  GAGGTTACAGAAAACCATCTTGGCCTGTGAATTCTGGAGCTCCAGGAGTG  50
      |||||||||| || ||||  ||  ||| ||  || |  ||||    || |
seq2  GAGGTTACAG-AATCCATTCTG--CTG-GA--TCCGAGGCTC----AGAG  40

seq1  TGACACCATACCCGGCTAAAAACGCTGGGCTTGAGACTGTAGGCTTTGAA  100
      ||  |||| | ||||||  |||||||||   ||||||||||||| |||||
seq2  TG--ACCA-AGCCGGCT--AAACGCTGG--CTGAGACTGTAGGC-TTGAA  82

seq1  CTTGTTTTCTTTTTGTTTGTTTGTTTTTTAATTCATAAAAGTGCAGACTT  150
      ||   |||||||        ||||| ||| | ||||  |||||||||| |
seq2  CT--GTTTCTTT-------GTTGTTGTTTTAATCAT--AAGTGCAGAC-T  120

seq1  TTCATTCAGTATGGGTTTAAAAAGAACCTCTCTGTACTCAGTTGGATCAG  200
      |||| |||||||||| |||||||| |||||||||||||||||||||||||
seq2  TTCA-TCAGTATGGG-TTAAAAAGGACCTCTCTGTACTCAGTTGGATCAG  168

seq1  TATATGCAGTGTATATAGCTTCAGCAAAATATCAAAATAGTGACCAGAAA  250
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  TATATGCAGTGTATATAGC-TCAGC-AAATATCAAAATAGTGACCAGAAA  216

seq1  AAAGAAAGAGAAAATAAAAATCAAATCTGCACACTAATGTAACCAAAAAC  300
      ||   ||||| ||||||||||| ||||||||||||||||||||| |||||
seq2  AA--GAAGAG-AAATAAAAATC-AATCTGCACACTAATGTAACC-AAAAC  261

seq1  GCTAATCCCCTAAGCAATCAAAACCCAAAACAACAGGGGCAGTTTAGTGG  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAT-CCCTAAGCAATCAAAACCCAAAACAACAGGGGCAGTTTAGTGG  310

seq1  CACTG-AATTACAACATGTGGTCAACCGTGAAGACAAGGTAGAAAGGCAG  399
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAATTACAACATGTGGTCAACCGTGAAGACAAGGTAGAAAGGCAG  360

seq1  TTTCAGATGTAATAGCCTATCAAGGCAAGCGTTGCCATGTTTCTTTGGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATGTAATAGCCTATCAAGGCAAGCGTTGCCATGTTTCTTTGGGG  410

seq1  GCTTTGTAAATTAAGTCTTTGTAAGACTAAGGATGACACATGTTACAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTAAATTAAGTCTTTGTAAGACTAAGGATGACACATGTTACAGGA  460

seq1  TTTTGCTCAAAGTTTTTTAACTTTACTTAACAACCCTCCATTAAATATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCAAAGTTTTTTAACTTTACTTAACAACCCTCCATTAAATATTC  510

seq1  TTGGTGGCAGGTGAGGACAAGTTTTAATTTACAGTCTTAGACATTTTCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCAGGTGAGGACAAGTTTTAATTTACAGTCTTAGACATTTTCTG  560

seq1  CTCTATGCTGAGCAGCTCTGGATGTGCTTCTGCCTTCTCTGAAGCCCTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGCTGAGCAGCTCTGGATGTGCTTCTGCCTTCTCTGAAGCCCTGC  610

seq1  CTGGTGCAACCTCAGCAAGAGGGGAAGCCCATACACCTCTGTGTGGAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCAACCTCAGCAAGAGGGGAAGCCCATACACCTCTGTGTGGAAAT  660

seq1  ACACTGCCCCTGCATACCCGGAACATCATCTAATCTCTGCTCATGTCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCCCCTGCATACCCGGAACATCATCTAATCTCTGCTCATGTCTTT  710

seq1  CAACTCCTAAGAAGATGAATGTCTTCTTGATGTACAACAATAATTTTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTAAGAAGATGAATGTCTTCTTGATGTACAACAATAATTTTGTA  760

seq1  GCATAAATATAATATAATATACCATAAACAATATAGTATAGAATACAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAATATAATATAATATACCATAAACAATATAGTATAGAATACAAAT  810

seq1  TCTAGCAACCTAAGTGTTCTTGATGCTTTGTCCTGGAAGCACATAGCTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAACCTAAGTGTTCTTGATGCTTTGTCCTGGAAGCACATAGCTCC  860

seq1  CCTCTCCCTTTTTCTGACATGTACTACACACAGCAGTACAGACCTGAGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTTTTTCTGACATGTACTACACACAGCAGTACAGACCTGAGTA  910

seq1  TGGTATTGCTCCCTTCTCTCTGAAATGGCTGTTGAGCCTAATGAACTCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTGCTCCCTTCTCTCTGAAATGGCTGTTGAGCCTAATGAACTCAA  960

seq1  AGCTTTGTTCATCCCCAAGTCTACACATTTTACATTAGCTGCAAATAGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTTCATCCCCAAGTCTACACATTTTACATTAGCTGCAAATAGTG  1010

seq1  ACGTTTCTTAGGTTCTCAGCTTGGAGCATGATAGAAGCTCTTATTGTCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTCTTAGGTTCTCAGCTTGGAGCATGATAGAAGCTCTTATTGTCCA  1060

seq1  TAAACAAATGTTTCTTATAGTGACCTTGTCCAACCCTACAACTTGGAGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAATGTTTCTTATAGTGACCTTGTCCAACCCTACAACTTGGAGAA  1110

seq1  ATGAATGACTGCAGCTATACACTACAACCAGTAGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGACTGCAGCTATACACTACAACCAGTAGAATTC  1149