BAC Information

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BAC

Clone NameB6Ng01-260F03
Chromosome14 (Build37)
Map Location 43,308,823 - 43,309,930
singlet/doubletsinglet
Overlap geneLOC100040863
Upstream geneLOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249
Downstream geneLOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260F03.bB6Ng01-260F03.g
ACCGA065272GA065273
length9991,075
definitionB6Ng01-260F03.b B6Ng01-260F03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttgttcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagcccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagttcat
taggtcccatttgtcaattctcgatcttacagcacatgccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttctttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgattcgca
ttcttctacatgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagttttcatcacagttgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctcggttttttgtaattccagatga
atctgccgattgccctttctaattcgttgaagaattgagttgaaattttg
atggggtttgcgtaagccatattctaataacatgaatactaacaggaagg
gattacagattagcacaaaattgatttctccatgtcctaagacacaagca
tacaatgtctcgagtgaaaggaatttaccattaagttttatgtggtaacc
agctccacagcaataaactattctggtggtatggaaaaatatgtttaaat
atataaatattgactcaaagaaggataacatatgcctagcactgcactt
gaattcatgtagcaatatgaacaaaggattatccctgccttaaaactaag
aggaaaaaaaaaagccttaaaactgaggaccaaagcctgtgggacagtct
agtagaaacatttcacagaactagtgtattcctttgggctcacctaagag
ttcttgagggtcaactatctccatttggtcccctcgctctgctgtcctct
gcccaagataataagtttaatcagtaccaataggacccagttggaaggag
caaggatgtggcattcaattttcttgggaattccagatacagcctttttg
cacatgatacttgattgcttagttcagaggatgatttactctttggacca
tgctctaccacaggatgaatattgaattcaccatcattaaatcacaacat
gagaagacaatgttggatatggagaaaatgacgcagtcaataagtgatac
cattgagaagtacaaggaattcatagaagataacgattcctacaggtgag
tcccagacacagctgaaacccagcactaggcagggaatggttgtggcctt
ctgggactttgtacaaaagtaagagctctagttctatactctctgtttct
taataggagccctcccttgagtcatgggtcttggatttgtacctcttgga
ctcagttttcctaagtgtgaatattgtccaagaccctccagtctttattc
ttccaaattcagatcttctgcatcgaaaccatttccaccatgctgggaat
ctcaagcaaccctgaacttctagggttgtgacagcagattacaagatctg
ggatccatgacaaaaaatggaaagagtttatatcttttgggtcttctctc
ctccctaagaggcattgccctctcctactgatggttttctggtactacac
acatatgagcaacatgagaagttttctcttctgtgatttatatgaacact
ctgtgtagttatcagaaatattttgagactgtacatgtgctgtctctgat
gactggcctcattgtacttagaataacatggacttagtccggccttctgg
gatcagagctgcagatactaatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43308823_43309930
seq2: B6Ng01-260F03.g_62_1136

seq1  GAATTCATGTAGCAATATGAACAAAGGATTATCCCTGCCTTAAAACTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGCAATATGAACAAAGGATTATCCCTGCCTTAAAACTAAG  50

seq1  AGGAAAAAAAAAAGCCTTAAAACTGAGGACCAAAGCCTGTGGGACAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAAAAAGCCTTAAAACTGAGGACCAAAGCCTGTGGGACAGTCT  100

seq1  AGTAGAAACATTTCACAGAACTAGTGTATTCCTTTGGGCTCACCTAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAACATTTCACAGAACTAGTGTATTCCTTTGGGCTCACCTAAGAG  150

seq1  TTCTTGAGGGTCAACTATCTCCATTTGGTCCCCTCGCTCTGCTGTCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGGGTCAACTATCTCCATTTGGTCCCCTCGCTCTGCTGTCCTCT  200

seq1  GCCCAAGATAATAAGTTTAATCAGTACCAATAGGACCCAGTTGGAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGATAATAAGTTTAATCAGTACCAATAGGACCCAGTTGGAAGGAG  250

seq1  CAAGGATGTGGCATTCAATTTTCTTGGGAATTCCAGATACAGCCTTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATGTGGCATTCAATTTTCTTGGGAATTCCAGATACAGCCTTTTTG  300

seq1  CACATGATACTTGATTGCTTAGTTCAGAGGATGATTTACTCTTTGGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATACTTGATTGCTTAGTTCAGAGGATGATTTACTCTTTGGACCA  350

seq1  TGCTCTACCACAGGATGAATATTGAATTCACCATCATTAAATCACAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTACCACAGGATGAATATTGAATTCACCATCATTAAATCACAACAT  400

seq1  GAGAAGACAATGTTGGATATGGAGAAAATGACGCAGTCAATAAGTGATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACAATGTTGGATATGGAGAAAATGACGCAGTCAATAAGTGATAC  450

seq1  CATTGAGAAGTACAAGGAATTCATAGAAGATAACGATTCCTACAGGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGAAGTACAAGGAATTCATAGAAGATAACGATTCCTACAGGTGAG  500

seq1  TCCCAGACACAGCTGAAACCCAGCACTAGGCAGGGAATGGTTGTGGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACACAGCTGAAACCCAGCACTAGGCAGGGAATGGTTGTGGCCTT  550

seq1  CTGGGACTTTGTACAAAAGTAAGAGCTCTAGTTCTATACTCTCTGTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTTTGTACAAAAGTAAGAGCTCTAGTTCTATACTCTCTGTTTCT  600

seq1  TAATAGGAGCCCTCCCTTGAGTCATGGGTCTTGGATTTGTACCTCTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGAGCCCTCCCTTGAGTCATGGGTCTTGGATTTGTACCTCTTGGA  650

seq1  CTCAGTTTTCCTAAGTGTGAATATTGTCCAAGACCCTCCAGTCTTTATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTTCCTAAGTGTGAATATTGTCCAAGACCCTCCAGTCTTTATTC  700

seq1  TTCCAAATTCAGGATCTTCTGCATCGAAACCATTTCCACCATGCTGGGAA  750
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATTCA-GATCTTCTGCATCGAAACCATTTCCACCATGCTGGGAA  749

seq1  TCTCAAGCAACCCTGAACTTCTAGGGTTGTGACAGCAGATTACAAGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGCAACCCTGAACTTCTAGGGTTGTGACAGCAGATTACAAGATCT  799

seq1  GGGATCCATGACAAAAAATGGAAAGAGTTTATATCTTTTGGGTCTTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCATGACAAAAAATGGAAAGAGTTTATATCTTTTGGGTCTTCTCT  849

seq1  CCTCCCTAAGAGGGCATTGCCCTCTCCCTACTGATGGTTTTCTGGTACTA  900
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  CCTCCCTAAGA-GGCATTGCCCTCT-CCTACTGATGGTTTTCTGGTACTA  897

seq1  CACACATATGAGCAACCATGAGGAAGTTTTCCTCTTCTGTGATGTATATG  950
      ||||||||||||||| ||||| |||||||| |||||||||||| ||||| 
seq2  CACACATATGAGCAA-CATGA-GAAGTTTT-CTCTTCTGTGATTTATAT-  943

seq1  GAACACTCTTGGTGTAGGGTTATCAGAAATATTTTGAGACTTGTTACATG  1000
      |||||||||  |||||  |||||||||||||||||||||||   ||||||
seq2  GAACACTCT--GTGTA--GTTATCAGAAATATTTTGAGACT--GTACATG  987

seq1  TGGCTGGTCTCTGGATTTGACCTGCCTCTATTTGGTACTTATGGATATAC  1050
      | ||| |||||||    ||||  ||||| |||  ||||||| | ||| ||
seq2  T-GCT-GTCTCTG---ATGACTGGCCTC-ATT--GTACTTA-GAATA-AC  1027

seq1  AGTGGACTCTAGTCTCGGGCTTTCTGGGGATCAGAGCCCTTGCAGGGATC  1100
      | |||||| |||  || ||| |||| |||||||||||   ||||  ||| 
seq2  A-TGGACT-TAG--TCCGGCCTTCT-GGGATCAGAGC---TGCA--GATA  1067

seq1  ATAATATT  1108
       |||||||
seq2  CTAATATT  1075