BAC Information

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BAC

Clone NameB6Ng01-260K03
Chromosome14 (Build37)
Map Location 44,327,577 - 44,435,482
singlet/doubletdoublet
Overlap geneLOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12
Upstream geneLOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300
Downstream geneEar-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260K03.bB6Ng01-260K03.g
ACCGA065506GA065507
length1,2221,177
definitionB6Ng01-260K03.b B6Ng01-260K03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,434,267 - 44,435,482)(44,327,577 - 44,328,759)
sequence
gaattcctcccttcacagattctgcggtccctatgagctctggttctaga
caatggccatccacgatggactctggcaagattcgaaaagctaacaatgg
aaagagttgatcccaccacacctcagccatgcagtcagatctgagaatta
agaaatttcccaggagccccacaactgtccttagtaggaagggacttcca
tagccaaaccatggaggtacagaagtagaaacacacctggacccagaact
agagacggcggctttgtttctcagtccttctttcctggtgggatggcgaa
tagaagaatgaaatatcctttagaatctcattcctgatatgggtgaggtc
agagttgccaggccgcgcaaacatactggggcgctgtgtagaggaggggg
ggcgttccagccttggtgtctgtgaccacaccccattcttccaaggatgc
ccctccatgttgggtagtttaatcctgatcttcaagcagacaatgaggtt
ttctgcacacacacacacacacacacacacacacacacacacacacacac
acgaactggtagatgtctcgaagagctccatgaggaacatcagccgcaga
tgcaccaagcctgccagggggaccctggaaggctcctccctaaggggcac
caggaacctaggaattggatgctacccttcctttgtatagtcatgtgata
ccaccccttaggcatgagtgacagtgcaccagaaagtctgtagagtagtg
aacattttgtccaacagggagaagaatttgaatctcctctttcacactga
cttacagagtcaatttaatttcaactaaaatcccagccaaaggagctgac
ttccagactgaggccagagtatcacaccatccattctatatgccagcagt
aagtggggtgtgacactcatccctcagtgagtagcccaagaacatattta
ctggtgccaatcatgcacagcaagtatggagtggcatgggaggagaagtt
cacagtgtcccccttgaagtacatattatgagtcagtctgccaaatcctg
agcacaaaaaaggacctgcaggacccttcacagacaccaaccacccagat
ccctgtctcgccatggagtctctctctgcagtccttatgttaccttgcca
agaaatctgatcaaagaatccaagattccagctttctcaataaatagccc
tccaaagaatatttacggaggt
gaattcaccatcatcaaatcacaacatgagaagacaatgttggatatgga
aaaaatgacgcagtcaataagtgataccattgagacatacaaggaattca
tagaagataaggattcctacaggtgagtcccagacacagctgagaccctg
cactagggagggaatgcttgtgaccttctaagactttgaacaaaagtaag
agctctagttctatactatctgtttcttaataggagacttcccttgagga
aaggttctaggatttgtacctcttggactcagttttcgtaagtgtgaaga
ttgtccaagaccatcagtctttattcttccaaattcaggatcctctctat
agaaacaatttccaccatgctgggaatctcaagcaatcctgacctctagg
gttctgacagcagagtaaaagatctgggatccatcaaaaaaaatcaaaag
agtttataccttttgggtctcctctcctccctcagaggggatttgcactc
ttcctactgatggttttctggtaccacagacagataggcaaccattaggt
acatttcctcttctgtgatgtacatgggacactcatagtgtcagggtttt
cagaagtcctttgattcttgtggcatgtggctggtccctggatttgacct
gcctctattttggactgatgggtatactgtggtctctagtctggggctgt
ctggggatcagggccgttgcaggtatcatagttcttggaggagtgcaggc
aaatggaagcttactgggaatcacctttttttgtttgtttgtttgtttgt
ggttcagcttcacgcacagctacctcctgaaagaatgcaatcaattgaag
gaaaaagtaaggatgttgctgaatgagaacagaaagctgctggtagagca
ggctgaccaggaagcatcctatggtgaagaaaagaggttctgtgatgagt
ccagcagacatacatcccaagtgctaagcagtagcacgtagatgatggtg
tatcagaggcagattgccctcatggctaaccaataaacaataagacatca
atgtacagtcacaacttattccaggtactcacctgtttctctctagtgtt
ttattaggtgatcattctacagcctttctctctggaggtagcgtttccag
aactatatgtttatcaagcaaattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44434267_44435482
seq2: B6Ng01-260K03.b_45_1266 (reverse)

seq1  ACCTCC-TATATATCTCTTTGGAAGGCTATTTATTGAAGAAAAGCTG--A  47
      |||||| || |||| |||||||| |||||||||||||   |||||||  |
seq2  ACCTCCGTAAATAT-TCTTTGGAGGGCTATTTATTGA--GAAAGCTGGAA  47

seq1  TCTT-GATCCTTTTGATCAGATTTCT--GCAAG--TACATAGGGACTGCA  92
      |||| ||| | |||||||||||||||  |||||   ||||| ||||||||
seq2  TCTTGGATTC-TTTGATCAGATTTCTTGGCAAGGTAACATAAGGACTGCA  96

seq1  GAGAGACCTCCCATG--CAGACAGGGCTCTGGGTTGGTTGTGTCTGTGAA  140
      ||||||    |||||   |||||||| ||||||| | | |||||||||||
seq2  GAGAGAGACTCCATGGCGAGACAGGGATCTGGGTGGTTGGTGTCTGTGAA  146

seq1  GGGTCCTGCAGGTCCTTTTTTGTGCTCAGGATTCTGCAGACTGACTCAT-  189
      |||||||||||||||||||||||||||||||||  |||||||||||||| 
seq2  GGGTCCTGCAGGTCCTTTTTTGTGCTCAGGATTTGGCAGACTGACTCATA  196

seq1  ATATGTAACTTC-AGGGGGACACTGTGGAACTCTTCCTCCCCTGCCACTC  238
      |||||| ||||| ||||||||||||| |||||  ||||||| ||||||||
seq2  ATATGT-ACTTCAAGGGGGACACTGT-GAACTTCTCCTCCCATGCCACTC  244

seq1  CATACTTGCTGTGCATGATTGGCACCAGTAAATATGTTCTTGGGCTACTC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTGCTGTGCATGATTGGCACCAGTAAATATGTTCTTGGGCTACTC  294

seq1  ACTGAGGGATGAGTGTCACACCCCACTTACTGCTGGCATATAGAATGGAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGGATGAGTGTCACACCCCACTTACTGCTGGCATATAGAATGGAT  344

seq1  GGTGTGATACTCTGGCCTCAGTCTGGAAGTCAGCTCCTTTGGCTGGGATT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATACTCTGGCCTCAGTCTGGAAGTCAGCTCCTTTGGCTGGGATT  394

seq1  TTAGTTGAAATTAAATTGACTCTGTAAGTCAGTGTGAAAGAGGAGATTCA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGAAATTAAATTGACTCTGTAAGTCAGTGTGAAAGAGGAGATTCA  444

seq1  AATTCTTCTCCCTGTTGGACAAAATGTTCACTACTCTACAGACTTTCTGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCTCCCTGTTGGACAAAATGTTCACTACTCTACAGACTTTCTGG  494

seq1  TGCACTGTCACTCATGCCTAAGGGGTGGTATCACATGACTATACAAAGGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTCACTCATGCCTAAGGGGTGGTATCACATGACTATACAAAGGA  544

seq1  AGGGTAGCATCCAATTCCTAGGTTCCTGGTGCCCCTTAGGGAGGAGCCTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGCATCCAATTCCTAGGTTCCTGGTGCCCCTTAGGGAGGAGCCTT  594

seq1  CCAGGGTCCCCCTGGCAGGCTTGGTGCATCTGCGGCTGATGTTCCTCATG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCCCCCTGGCAGGCTTGGTGCATCTGCGGCTGATGTTCCTCATG  644

seq1  GAGCTCTTCGAGACATCTACCAGTTCGTGTGTGTGTGTGTGTGTGTGTGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTTCGAGACATCTACCAGTTCGTGTGTGTGTGTGTGTGTGTGTGT  694

seq1  GTGTGTGTGTGTGTGTGTGTGTGCAGAAAACCTCATTGTCTGCTTGAAGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGCAGAAAACCTCATTGTCTGCTTGAAGA  744

seq1  TCAGGATTAAACTACCCAACATGGAGGGGCATCCTTGGAAGAATGGGGTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATTAAACTACCCAACATGGAGGGGCATCCTTGGAAGAATGGGGTG  794

seq1  TGGTCACAGACACCAAGGCTGGAACGCCCCCCCTCCTCTACACAGCGCCC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAGACACCAAGGCTGGAACGCCCCCCCTCCTCTACACAGCGCCC  844

seq1  CAGTATGTTTGCGCGGCCTGGCAACTCTGACCTCACCCATATCAGGAATG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGTTTGCGCGGCCTGGCAACTCTGACCTCACCCATATCAGGAATG  894

seq1  AGATTCTAAAGGATATTTCATTCTTCTATTCGCCATCCCACCAGGAAAGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTAAAGGATATTTCATTCTTCTATTCGCCATCCCACCAGGAAAGA  944

seq1  AGGACTGAGAAACAAAGCCGCCGTCTCTAGTTCTGGGTCCAGGTGTGTTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGAGAAACAAAGCCGCCGTCTCTAGTTCTGGGTCCAGGTGTGTTT  994

seq1  CTACTTCTGTACCTCCATGGTTTGGCTATGGAAGTCCCTTCCTACTAAGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTGTACCTCCATGGTTTGGCTATGGAAGTCCCTTCCTACTAAGG  1044

seq1  ACAGTTGTGGGGCTCCTGGGAAATTTCTTAATTCTCAGATCTGACTGCAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTGGGGCTCCTGGGAAATTTCTTAATTCTCAGATCTGACTGCAT  1094

seq1  GGCTGAGGTGTGGTGGGATCAACTCTTTCCATTGTTAGCTTTTCGAATCT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGTGTGGTGGGATCAACTCTTTCCATTGTTAGCTTTTCGAATCT  1144

seq1  TGCCAGAGTCCATCGTGGATGGCCATTGTCTAGAACCAGAGCTCATAGGG  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAGTCCATCGTGGATGGCCATTGTCTAGAACCAGAGCTCATAGGG  1194

seq1  ACCGCAGAATCTGTGAAGGGAGGAATTC  1216
      ||||||||||||||||||||||||||||
seq2  ACCGCAGAATCTGTGAAGGGAGGAATTC  1222

seq1: chr14_44327577_44328759
seq2: B6Ng01-260K03.g_64_1240

seq1  GAATTCACCATCATCAAATCACAACATGAGAAGACAATGTTGGATATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATCATCAAATCACAACATGAGAAGACAATGTTGGATATGGA  50

seq1  AAAAATGACGCAGTCAATAAGTGATACCATTGAGACATACAAGGAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGACGCAGTCAATAAGTGATACCATTGAGACATACAAGGAATTCA  100

seq1  TAGAAGATAAGGATTCCTACAGGTGAGTCCCAGACACAGCTGAGACCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATAAGGATTCCTACAGGTGAGTCCCAGACACAGCTGAGACCCTG  150

seq1  CACTAGGGAGGGAATGCTTGTGACCTTCTAAGACTTTGAACAAAAGTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGGAGGGAATGCTTGTGACCTTCTAAGACTTTGAACAAAAGTAAG  200

seq1  AGCTCTAGTTCTATACTATCTGTTTCTTAATAGGAGACTTCCCTTGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTAGTTCTATACTATCTGTTTCTTAATAGGAGACTTCCCTTGAGGA  250

seq1  AAGGTTCTAGGATTTGTACCTCTTGGACTCAGTTTTCGTAAGTGTGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTAGGATTTGTACCTCTTGGACTCAGTTTTCGTAAGTGTGAAGA  300

seq1  TTGTCCAAGACCATCAGTCTTTATTCTTCCAAATTCAGGATCCTCTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAAGACCATCAGTCTTTATTCTTCCAAATTCAGGATCCTCTCTAT  350

seq1  AGAAACAATTTCCACCATGCTGGGAATCTCAAGCAATCCTGACCTCTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAATTTCCACCATGCTGGGAATCTCAAGCAATCCTGACCTCTAGG  400

seq1  GTTCTGACAGCAGAGTAAAAGATCTGGGATCCATCAAAAAAAATCAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGACAGCAGAGTAAAAGATCTGGGATCCATCAAAAAAAATCAAAAG  450

seq1  AGTTTATACCTTTTGGGTCTCCTCTCCTCCCTCAGAGGGGATTTGCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATACCTTTTGGGTCTCCTCTCCTCCCTCAGAGGGGATTTGCACTC  500

seq1  TTCCTACTGATGGTTTTCTGGTACCACAGACAGATAGGCAACCATTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTGATGGTTTTCTGGTACCACAGACAGATAGGCAACCATTAGGT  550

seq1  ACATTTCCTCTTCTGTGATGTACATGGGACACTCATAGTGTCAGGGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCTCTTCTGTGATGTACATGGGACACTCATAGTGTCAGGGTTTT  600

seq1  CAGAAGTCCTTTGATTCTTGTGGCATGTGGCTGGTCCCTGGATTTGACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCCTTTGATTCTTGTGGCATGTGGCTGGTCCCTGGATTTGACCT  650

seq1  GCCTCTATTTTGGACTGATGGGTATACTGTGGTCTCTAGTCTGGGGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTATTTTGGACTGATGGGTATACTGTGGTCTCTAGTCTGGGGCTGT  700

seq1  CTGGGGATCAGGGCCGTTGCAGGTATCATAGTTCTTGGAGGAGTGCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATCAGGGCCGTTGCAGGTATCATAGTTCTTGGAGGAGTGCAGGC  750

seq1  AAATGGAAGCTTACTGGGAATCACCTTTTTTTGTTTGTTTGTTTGTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAGCTTACTGGGAATCACCTTTTTTTGTTTGTTTGTTTGTTTGT  800

seq1  GGTTCAGCTTCACGCACAGCTACCTCCTGAAAGAATGCAATCAATTGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGCTTCACGCACAGCTACCTCCTGAAAGAATGCAATCAATTGAAG  850

seq1  GAAAAAGTAAGGATGTTGCTGAATGAGAACAGAAAGCTGCTGGTAGAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTAAGGATGTTGCTGAATGAGAACAGAAAGCTGCTGGTAGAGCA  900

seq1  GGCTGACCAGGAAGCATCCTATGGTGAAGAAAAGAGGTTCTGTGATGAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACCAGGAAGCATCCTATGGTGAAGAAAAGAGGTTCTGTGATGAGT  950

seq1  CCAGCAAGAACATACATCCCAAGTGCTAAGCAGTAGCACGTAGGATGAT-  999
      ||||||   ||||||||||||||||||||||||||||||||| |||||| 
seq2  CCAGCA--GACATACATCCCAAGTGCTAAGCAGTAGCACGTA-GATGATG  997

seq1  GTGTATCAGAGGCAGATTGCCCTCATGGCTAACC-ATAAACA--TAGACA  1046
      |||||||||||||||||||||||||||||||||| |||||||   |||||
seq2  GTGTATCAGAGGCAGATTGCCCTCATGGCTAACCAATAAACAATAAGACA  1047

seq1  ATCCAATGTAACAGTCCACCAACTTA-TCCAGGTACTCACCTGTTTCTCC  1095
         |||||| ||||||   ||||||| ||||||||||||||||||||| |
seq2  --TCAATGT-ACAGTC--ACAACTTATTCCAGGTACTCACCTGTTTCT-C  1091

seq1  TCTAAGTGTTTATTTAGGTGATCA-TCTACAAGGCTT--TCTCTGGAGGT  1142
      ||| |||||||  ||||||||||| ||||| || |||  |||||||||||
seq2  TCT-AGTGTTTTATTAGGTGATCATTCTAC-AGCCTTTCTCTCTGGAGGT  1139

seq1  AGCCTTTTTCAAGAAACTATATGTTTATCAAGCAAATTTTT  1183
      |||   |||| || |||||||||||||||||||||||||||
seq2  AGC--GTTTCCAG-AACTATATGTTTATCAAGCAAATTTTT  1177