BAC Information

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BAC

Clone NameB6Ng01-261D09
Chromosome14 (Build37)
Map Location 94,674,289 - 94,675,409
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261D09.bB6Ng01-261D09.g
ACCGA065937GA065938
length1,1061,182
definitionB6Ng01-261D09.b B6Ng01-261D09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccataaattcatttttttaatagctgagtagtactccattgtgta
aatgtaccacattttctgtatccattcctctgttgaggggcatctgggtt
ctttccagcttctggctattataaacaaggctgctatgaacatagtggag
catgtgttcttcttaccggttgggacatcttctgggaagcaatgggttat
tgtggcgtatttggtgggtggaaagggaaagcagaatgagatttcaataa
tttaagaaaaatggaatcaataattaacaatataggtatatataaatatt
tgagaacttccagatattcttgctgaaagtaactaataatttcaaacaaa
aatcattttatttgttttaaagctaaatgatatgatttaattttgtatga
taccacgattgtaactagacttgataattaagataaagcattaaaagagg
ggttaactatggaatttctcacagaaaacataataaatttctagtaaaca
gaaaaacagacaaaacattctgagtaaaaacaacagaatcacatataaga
atataatacaattttatacatgaaaatgattcttagattatttgaataag
aaaaccatttctgtatagtgattcacttaatattttcaagttgaaaacat
cgttttttttaaaaatcagtcttatataatgatacacaagtttttcttgc
tacatatgtcaattttagacaaatactttaagaacttttctcaatttccc
ttcatctataggttattgatatccatgtggactatttactttcaaagtac
ctgcatcagaaaatatacattttccctatgaaatagtcactaagaaagaa
attaaagccttcagagaaattggtgtaataatgtctaaaaaattgccacc
taaagtatttgtttatttgttactaaatactttggaaatgtattaaaata
tattttttaaaaatgaaaatacagttattttgggtttgaaaagacaatag
aaataggatactcatatactatagcacatattgaagacatttagcatttc
tcatgcttaatatattcatcatatatagtatatcagtcgtttctttattc
catttt

gaattctcacatgagcaatactgaatggctgaaaagcacctgaaaaaatg
ttcaacgtccttaaccatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaggagtcacaatggctaagttttaaaattcaggtgacagc
aatgctggcaaggatttggagaaagaggaatactcctccattgttggtgg
gattgcaagcttgtataaccattctggaaatcaggctggcatttcctcag
aaaattgaacatagtggtaatggaggatccagcaatacctctcctgggca
tatatccagaaaatgttccaaccggtaagaaggatacatgctccactatg
ttcatagcagcctcatttacaatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa
tggatggacctggagggcatcatcctgtgtgaggtaacccaatcacaaag
gaactcacacaatatgtattcactgataagtggatattagcccatatact
taggatacccaagatataagatacaatttgttaaattcatgaaattaaag
aaaaacgaagaccaacgtgtggacactttgccccttcttagaattaggaa
caaaacacccatggaaggagttacagagtcaacgtttttagctgagagga
aaggatggaccatctagaaactgccatatccggggatctatcccataatc
agctttcaaatgctgacacctttgcatacactagcaagattttgctgaaa
ggacccagatatagctgtctcttgtgagatttgctggggcctagaagtgg
atgctcacagtcagctattggatggatcacaggacccccaatggaggagc
tagagaagagctgaaggggtctgcaaccctatagattgaacaacatatga
actaaccagtacccccagagctcatgtctctagctcatatgtatcagaga
tggcctagtcagccatcactgaaggagagccatgatcatacaaactatat
tcctcactacattggaaacacaggtcagatggaatgatgctgggaggagt
ggctggacacatctgtatgtcgtactcactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94674289_94675409
seq2: B6Ng01-261D09.b_46_1151

seq1  GAATTCCATAAATTCATTTTTTTAATAGCTGAGTAGTACTCCATTGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAATTCATTTTTTTAATAGCTGAGTAGTACTCCATTGTGTA  50

seq1  AATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTT  100

seq1  CTTTCCAGCTTCTGGCTATTATAAACAAGGCTGCTATGAACATAGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGCTTCTGGCTATTATAAACAAGGCTGCTATGAACATAGTGGAG  150

seq1  CATGTGTTCTTCTTACCGGTTGGGACATCTTCTGGGAAGCAATGGGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTCTTCTTACCGGTTGGGACATCTTCTGGGAAGCAATGGGTTAT  200

seq1  TGTGGCGTATTTGGTGGGTGGAAAGGGAAAGCAGAATGAGATTTCAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCGTATTTGGTGGGTGGAAAGGGAAAGCAGAATGAGATTTCAATAA  250

seq1  TTTAAGAAAAATGGAATCAATAATTAACAATATAGGTATATATAAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAAAATGGAATCAATAATTAACAATATAGGTATATATAAATATT  300

seq1  TGAGAACTTCCAGATATTCTTGCTGAAAGTAACTAATAATTTCAAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTTCCAGATATTCTTGCTGAAAGTAACTAATAATTTCAAACAAA  350

seq1  AATCATTTTATTTGTTTTAAAGCTAAATGATATGATTTAATTTTGTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTATTTGTTTTAAAGCTAAATGATATGATTTAATTTTGTATGA  400

seq1  TACCACGATTGTAACTAGACTTGATAATTAAGATAAAGCATTAAAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACGATTGTAACTAGACTTGATAATTAAGATAAAGCATTAAAAGAGG  450

seq1  GGTTAACTATGGAATTTCTCACAGAAAACATAATAAATTTCTAGTAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAACTATGGAATTTCTCACAGAAAACATAATAAATTTCTAGTAAACA  500

seq1  GAAAAACAGACAAAACATTCTGAGTAAAAACAACAGAATCACATATAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAGACAAAACATTCTGAGTAAAAACAACAGAATCACATATAAGA  550

seq1  ATATAATACAATTTTATACATGAAAATGATTCTTAGATTATTTGAATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATACAATTTTATACATGAAAATGATTCTTAGATTATTTGAATAAG  600

seq1  AAAACCATTTCTGTATAGTGATTCACTTAATATTTTCAAGTTGAAAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATTTCTGTATAGTGATTCACTTAATATTTTCAAGTTGAAAACAT  650

seq1  CGTTTTTTTTAAAAATCAGTCTTATATAATGATACACAAGTTTTTCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTTTTAAAAATCAGTCTTATATAATGATACACAAGTTTTTCTTGC  700

seq1  TACATATGTCAATTTTAGACAAATACTTTAAGAACTTTTCTCAATTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGTCAATTTTAGACAAATACTTTAAGAACTTTTCTCAATTTCCC  750

seq1  TTCATCTATAGGTTATTGATATCCATGTGGACTATTTACTTTCAAAGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTATAGGTTATTGATATCCATGTGGACTATTTACTTTCAAAGTAC  800

seq1  CTGCATCAGAAAATATACATTTTCCCTATGAAATAGTCACTAAGAAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCAGAAAATATACATTTTCCCTATGAAATAGTCACTAAGAAAGAA  850

seq1  ATTAAAGCCTTCAGAGAAATTGGTGTAATAATGTCTAAAAAATTGCCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGCCTTCAGAGAAATTGGTGTAATAATGTCTAAAAAATTGCCACC  900

seq1  TAAAGTATTTGTTTATTTGTTACTAAATACTTTGGAAATGTATTAAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATTTGTTTATTTGTTACTAAATACTTTGGAAATGTATTAAAATA  950

seq1  TATTTTTTAAAAATGAAAATACAGTTATTTTGGTTTGAAAAAGAACAAAT  1000
      ||||||||||||||||||||||||||||||||| ||  ||||||   |||
seq2  TATTTTTTAAAAATGAAAATACAGTTATTTTGGGTTTGAAAAGA--CAAT  998

seq1  AGAAATAGGAATACTCATATACTATAGCACATAATTGAAGACATTTAAGC  1050
      ||||||||| |||||||||||||||||||||| ||||||||||||| |||
seq2  AGAAATAGG-ATACTCATATACTATAGCACAT-ATTGAAGACATTT-AGC  1045

seq1  ATTTTCTCCATGCTTATTAATTAATCATCATAATTATAGTTATATCAGTC  1100
      | ||||| |||||||| ||  || ||||||||  ||||| ||||||||||
seq2  A-TTTCT-CATGCTTAATA--TATTCATCATA--TATAG-TATATCAGTC  1088

seq1  GGTTTTCTATTATTCCATTTT  1121
      |  ||||| ||||||||||||
seq2  G--TTTCT-TTATTCCATTTT  1106


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