BAC Information

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BAC

Clone NameB6Ng01-261D20
Chromosome14 (Build37)
Map Location 33,217,526 - 33,368,991
singlet/doubletdoublet
Overlap geneChat, Slc18a3, LOC100040834, EG665618, Ercc6
Upstream geneSh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik
Downstream gene9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261D20.bB6Ng01-261D20.g
ACCGA065959GA065960
length564901
definitionB6Ng01-261D20.b B6Ng01-261D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,217,526 - 33,218,095)(33,368,094 - 33,368,991)
sequence
ctggcctgacttctcccagtgacagactgtgatggagagaagtaagccaa
agcaactctttgctccctaagttgtgtttggccacagtctctatcacagc
aacagaaagcaaactaggatgctcctccttcaacccttacgtgtacatca
gagttctttatcccatctcccttcaacagcgtctttgacaatatcaaaca
catctgtttattagtttctctgaagtgcctgtggtactgactccatttgc
ctctgtgcagctctcccggaggtcacattatttccctgctttgggtttct
gactgtgagctcattcgcaatagacagtttcccactgtgagtgtttgatg
tgtccaaggtaggaagtggttttgtgtgtgattctctggatcttattgta
tccggccagtctggccttttaaaatgattatgtaaatgcagacttctcat
cttcacagggcaaagcttgtggtttcgatttttcatgtatttctttccct
tgcatctaccaccttgagcagaatttcttacccctgtctggggcatgtgt
ggggtggggagggg
gaattcctatttccattgtgttcaaaaagatgtataatgatcacaaagaa
ctttaaagatgccttacagacaggacaagaagttgtacaaaatgtgcaca
atgaaaatataatctctactgggtaacaacccatctatgactattgatat
tcacctgattcaatctcagatttctataactgcctagactggagtttcaa
taatggcgaattgttgaatattatggacgtctcaatccaaacacttaaga
caaatcatctcgggcagtttcaaattaaaagcttgtaaaatatgtaacct
ctcctagtttttgcaattaatagggtacatctgcaattagcctgacttac
tgaatgtagtactgttgtcattaaaagatgtctgaggaagtgctgccgtt
attatggaggctcaggagaccaatccctcctagagggcaaacagtggact
ggtagaaaacaacagccataaatcacactgtcaggcagtggggaaaacca
gtgaagcacaggcacatgaaggccattcacagcaaacactcggcagcttc
ccaggcaggatttactgcacctgtaattaattaaaatttccttcaagcta
aatctttaataaacaaggatttgtgctgacaatgaagaaaagggggctcc
agcaacgaaatctttgcagtgtacctccagaacaaacggagtctatggct
cctggtatcagtgcacagagcatctccgagttactaggaaataattgtgc
ttgtaatgagtctgaaatgttcaggaggcttgaaggagcatatggctact
ctgtctattctgacttcttgttatttttcccgctccctttgcagttaatt
tttatttgtttaatttattgttctcactgtgtgtgggggggtgagtgtct
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_33217526_33218095
seq2: B6Ng01-261D20.b_45_614

seq1  GAATTCCTGGCCTGACTTCTCCCAGTGACAGACTGTGATGGAGAGAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCCTGACTTCTCCCAGTGACAGACTGTGATGGAGAGAAGTA  50

seq1  AGCCAAAGCAACTCTTTGCTCCCTAAGTTGTGTTTGGCCACAGTCTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGCAACTCTTTGCTCCCTAAGTTGTGTTTGGCCACAGTCTCTAT  100

seq1  CACAGCAACAGAAAGCAAACTAGGATGCTCCTCCTTCAACCCTTACGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAACAGAAAGCAAACTAGGATGCTCCTCCTTCAACCCTTACGTGT  150

seq1  ACATCAGAGTTCTTTATCCCATCTCCCTTCAACAGCGTCTTTGACAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGAGTTCTTTATCCCATCTCCCTTCAACAGCGTCTTTGACAATAT  200

seq1  CAAACACATCTGTTTATTAGTTTCTCTGAAGTGCCTGTGGTACTGACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACATCTGTTTATTAGTTTCTCTGAAGTGCCTGTGGTACTGACTCC  250

seq1  ATTTGCCTCTGTGCAGCTCTCCCGGAGGTCACATTATTTCCCTGCTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCTCTGTGCAGCTCTCCCGGAGGTCACATTATTTCCCTGCTTTGG  300

seq1  GTTTCTGACTGTGAGCTCATTCGCAATAGACAGTTTCCCACTGTGAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGACTGTGAGCTCATTCGCAATAGACAGTTTCCCACTGTGAGTGT  350

seq1  TTGATGTGTCCAAGGTAGGAAGTGGTTTTGTGTGTGATTCTCTGGATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGTCCAAGGTAGGAAGTGGTTTTGTGTGTGATTCTCTGGATCTT  400

seq1  ATTGTATCCGGCCAGTCTGGCCTTTTAAAATGATTATGTAAATGCAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATCCGGCCAGTCTGGCCTTTTAAAATGATTATGTAAATGCAGACT  450

seq1  TCTCATCTTCACAGGGCAAAGCTTGTGGTTTCGATTTTTCATGTATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTTCACAGGGCAAAGCTTGTGGTTTCGATTTTTCATGTATTTCT  500

seq1  TTCCCTTGCATCTACCACCTTGAGCAGAATTTCTTACCCCTGTCTGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTGCATCTACCACCTTGAGCAGAATTTCTTACCCCTGTCTGGGGC  550

seq1  ATGTGTGGGGTGGGGAGGGG  570
      ||||||||||||||||||||
seq2  ATGTGTGGGGTGGGGAGGGG  570

seq1: chr14_33368094_33368991
seq2: B6Ng01-261D20.g_68_968 (reverse)

seq1  CAGACACTCA-CCCCCCACACACAGTGAGAACAATAAA-TAAACAAATAA  48
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  CAGACACTCACCCCCCCACACACAGTGAGAACAATAAATTAAACAAATAA  50

seq1  AAATTAACTGCAAAGGGAGCGGGAAAAATAACAAGAAGTCAGAATAGACA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACTGCAAAGGGAGCGGGAAAAATAACAAGAAGTCAGAATAGACA  100

seq1  GAGTAGCCATATGCTCCTTCAAGCCTCCTGAACATTTCAGACTCATTACA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCCATATGCTCCTTCAAGCCTCCTGAACATTTCAGACTCATTACA  150

seq1  AGCACAATTATTTCCTAGTAACTCGGAGATGCTCTGTGCACTGATACCAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATTATTTCCTAGTAACTCGGAGATGCTCTGTGCACTGATACCAG  200

seq1  GAGCCATAGACTCCGTTTGTTCTGGAGGTACACTGC-AAGATTTCGTTGC  247
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGCCATAGACTCCGTTTGTTCTGGAGGTACACTGCAAAGATTTCGTTGC  250

seq1  TGGAGCCCCCTTTTCTTCATTGTCAGCACAAATCCTTGTTTATTAAAGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCCCCTTTTCTTCATTGTCAGCACAAATCCTTGTTTATTAAAGAT  300

seq1  TTAGCTTGAAGGAAATTTTAATTAATTACAGGTGCAGTAAATCCTGCCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTGAAGGAAATTTTAATTAATTACAGGTGCAGTAAATCCTGCCTG  350

seq1  GGAAGCTGCCGAGTGTTTGCTGTGAATGGCCTTCATGTGCCTGTGCTTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGCCGAGTGTTTGCTGTGAATGGCCTTCATGTGCCTGTGCTTCA  400

seq1  CTGGTTTTCCCCACTGCCTGACAGTGTGATTTATGGCTGTTGTTTTCTAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTCCCCACTGCCTGACAGTGTGATTTATGGCTGTTGTTTTCTAC  450

seq1  CAGTCCACTGTTTGCCCTCTAGGAGGGATTGGTCTCCTGAGCCTCCATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCACTGTTTGCCCTCTAGGAGGGATTGGTCTCCTGAGCCTCCATAA  500

seq1  TAACGGCAGCACTTCCTCAGACATCTTTTAATGACAACAGTACTACATTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGCAGCACTTCCTCAGACATCTTTTAATGACAACAGTACTACATTC  550

seq1  AGTAAGTCAGGCTAATTGCAGATGTACCCTATTAATTGCAAAAACTAGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTCAGGCTAATTGCAGATGTACCCTATTAATTGCAAAAACTAGGA  600

seq1  GAGGTTACATATTTTACAAGCTTTTAATTTGAAACTGCCCGAGATGATTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTACATATTTTACAAGCTTTTAATTTGAAACTGCCCGAGATGATTT  650

seq1  GTCTTAAGTGTTTGGATTGAGACGTCCATAATATTCAACAATTCGCCATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAGTGTTTGGATTGAGACGTCCATAATATTCAACAATTCGCCATT  700

seq1  ATTGAAACTCCAGTCTAGGCAGTTATAGAAATCTGAGATTGAATCAGGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACTCCAGTCTAGGCAGTTATAGAAATCTGAGATTGAATCAGGTG  750

seq1  AATATCAATAGTCATAGATGGGTTGTTACCCAGTAGAGATTATATTTTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAATAGTCATAGATGGGTTGTTACCCAGTAGAGATTATATTTTCA  800

seq1  TTGTGCACATTTTGTACAACTTCTTGTCCTGTCTGTAAGGCATCTTTAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCACATTTTGTACAACTTCTTGTCCTGTCTGTAAGGCATCTTTAAA  850

seq1  GTTCTTTGTGATCATTATACATCTTTTTGAACACAATGGAAATAGGAATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGTGATCATTATACATCTTTTTGAACACAATGGAAATAGGAATT  900

seq1  C  898
      |
seq2  C  901