BAC Information

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BAC

Clone NameB6Ng01-261E04
Chromosome14 (Build37)
Map Location 6,056,171 - 6,117,798
singlet/doubletdoublet
Overlap geneLOC100041279, LOC100041651, LOC100041287
Upstream geneLOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268
Downstream geneLOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817, LOC100041431, LOC100041438, LOC100041442, LOC100041848, LOC100041456, LOC100041758, LOC100041470, LOC100041804, LOC100041487, LOC100041747, LOC100041507, LOC100041836, LOC100041728, LOC100041774, LOC100041530, LOC100041540, LOC100041840, EG666844, LOC666851, LOC100041569
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261E04.bB6Ng01-261E04.g
ACCGA065975GA065976
length1,0131,126
definitionB6Ng01-261E04.b B6Ng01-261E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,056,171 - 6,056,417)(6,116,677 - 6,117,798)
sequence
gaattcattgatccacttagatttgaccttagtacaaagagataggaatg
gatcaattcccattcttctacatgttaaccgccagtagtgccagcaccat
tttttgaaaatgctgtcttttctccactggatggttttagctcccttgtc
aaggatcaaatgaccataggtatgtgggttcatttctgtgtattcaattc
tattccattggtctacttatctatcgttataccaagaccatgcaattttt
gatcacaatgctctgtagtacagctttaggtcaggataacaacaacaatt
tttaaaaaaccttctgagggctggaattacaagcttgtaccaaatctggt
caacttttatatgtatttccaccagaggttcttttatcctggagaacagt
ttttgctatcctaggttttttgtaattccagatgaatttgcagattgccc
tttctaattcattgaagaattgagttggaattttgatgaagattgcattg
aatctgtagattgcatttgacaagatagccatttttactatattgatcct
gccaatccatgagcatagaagatctttccatcttctgagatcttctttaa
tttctttcttcagagacttgaagttcttatcatacagatcttttacttcc
ttagttagagtcacaccaaggtattttctattggattttactcttgtgaa
cagtgttgtttccgtaatttctttcttagcccatttcaaaagaccaagtc
agaatcagtgtcaatctcttactccctgcagatcaggatgttagttagct
cttagctgttgctctagcactaggcctgcctgtctgcggccatacttcca
accatgatgaccttggactctatgaaactctaagcaagccctcagttaaa
agcttcattgtatcttaccttatttatagtatttcatcacaataatagaa
cagtgactaccacaggcaggaaagagtttctctcagctttacagttatag
accatcatgaact
gaattcagtagccagttcttaaggcctgtaactttgaaaagcaaagccag
tctaagctggttcctgctaagtaaatgactgcaactcaacagcatctgca
gctgtagaggaaacccaggatggctgaaaatactgtgtaggcaaagaaag
gaaagctgcctcatttcccactaaaggcagctcaggggaaaagcctggtg
gaagcccattgcttctgagaaactttcaaggaatccccaatttaaaatag
tttctgacctactaactgcttctcctagttaaaagctttcacagtggttc
tctgacctaagggacatgcacttgccttttctttgttcagtttgtttctt
tgttttgagggagtcccctagcatacctcaggcccaatctgacttggcat
ttatggcaggtctccagcatcaaactctatttctcgaaatggctactacc
gtttcaaatacatggcatattgtcttatttggtttataaaaagttccttg
actttctttagtgttttagattttcaaataatttctcccctgctgctcac
gaattcccttttattactgttactttgagatcttcattggtgagccattg
tagtgcacacctttggttgcagaattccagaggcagatgccagcaagcct
ctgaaatgtgaagccagcctgggctatacaataaaacttccatgtagaac
atatcactaatcttgttgaaagcttgcatgttggagtttaagatatgagt
gctcccaagagctggaagccagtctgggctacattgtaacaggcccgaaa
gggctacacagcaagatcttgtttcaaacaaacaaacaaacaaacaaact
aacaaactaaaagcaagaaagagtcttggccatacagtgtatagatgcta
cagtcagggttatacagaaaggagtaaagctgaacccccagtcagttttc
ttcttaataaggtgccataccatcaccccaaatttacaagaagacataag
cccaaagatgattaaaactttatgaacactctattactacttacaggtat
tttgacctaaatcaaattgctcacaaagcagaattcatgagtcacttaaa
gtgtctatccccatgtctacgtttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_6056171_6056417
seq2: B6Ng01-261E04.b_330_670

seq1  TAACAACAACAATTTTTAAAAAACATTCTGAGTGCTGGAATCACAGGCAT  50
      |||||||||||||||||||||||| ||||||| |||||||| ||| || |
seq2  TAACAACAACAATTTTTAAAAAACCTTCTGAGGGCTGGAATTACAAGCTT  50

seq1  GTATCAACTCTGGCTAACTTTTGTATG-----------------CTTTTA  83
      ||| ||| |||||  ||||||| ||||                 ||||||
seq2  GTACCAAATCTGGTCAACTTTTATATGTATTTCCACCAGAGGTTCTTTTA  100

seq1  TAATAAACAAACA-----AACAAACAAACATTCCT----ATTCCAGTT--  122
      |  |  |  ||||       | | |  |  ||  |    ||||||| |  
seq2  TCCTGGA-GAACAGTTTTTGCTATCCTAGGTTTTTTGTAATTCCAGATGA  149

seq1  -CTAGCAG-TTGCC---------TCAGAGA------GAGCTG----TGTG  151
        | |||| |||||         |||  ||      ||| ||    | ||
seq2  ATTTGCAGATTGCCCTTTCTAATTCATTGAAGAATTGAGTTGGAATTTTG  199

seq1  ----ACACTGCAT----GCTG----CTTCCTTTCCCCAGATAGC------  183
          | | |||||     |||     | | |||  | |||||||      
seq2  ATGAAGATTGCATTGAATCTGTAGATTGCATTTGACAAGATAGCCATTTT  249

seq1  --------------------TC---------AGGAGATCTTTTCCATCTT  204
                          ||         || ||||| ||||||||||
seq2  TACTATATTGATCCTGCCAATCCATGAGCATAGAAGATC-TTTCCATCTT  298

seq1  CTATGATCTTCTGCAATTTCTTTCTTCAGAGACTTGAAGTTCT  247
      ||  ||||||||  |||||||||||||||||||||||||||||
seq2  CTGAGATCTTCTTTAATTTCTTTCTTCAGAGACTTGAAGTTCT  341

seq1: chr14_6116677_6117798
seq2: B6Ng01-261E04.g_67_1192 (reverse)

seq1  GTAAAACCGTAGGACATGGGATTAGACACTTTAAGTGACTCATG-ATTCT  49
      |||||  |||| ||||||||  |||||||||||||||||||||| |||||
seq2  GTAAA--CGTA-GACATGGGGATAGACACTTTAAGTGACTCATGAATTCT  47

seq1  GC-TTGTGAGCAA-TTGA-TTAGTTCAAAATACCTGTAAGTAGTAATAGA  96
      || |||||||||| |||| |||| ||||||||||||||||||||||||||
seq2  GCTTTGTGAGCAATTTGATTTAGGTCAAAATACCTGTAAGTAGTAATAGA  97

seq1  GTGTTCATAAAGTTTTAATCATCTTT-GGCTTATGTC-TCTTGTAATTTG  144
      |||||||||||||||||||||||||| |||||||||| |||||||| || 
seq2  GTGTTCATAAAGTTTTAATCATCTTTGGGCTTATGTCTTCTTGTAAATTT  147

seq1  GGGGTGATGGTATGGCACCTTATTAAGAAGAAAACTGACTGGGGGTTCAG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGATGGTATGGCACCTTATTAAGAAGAAAACTGACTGGGGGTTCAG  197

seq1  CTTTACTCCTTTCTGTATAACCCTGACTGTAGCATCTATACACTGTATGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTCCTTTCTGTATAACCCTGACTGTAGCATCTATACACTGTATGG  247

seq1  CCAAGACTCTTTCTTGCTTTT-GTTTGTTTGTTTGTTTGTTTGTTTGTTT  293
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  CCAAGACTCTTTCTTGCTTTTAGTTTGTTAGTTTGTTTGTTTGTTTGTTT  297

seq1  GTTTGAAACAAGATCTTGCTGTGTAGCCCTTTCGGGCCTGTTACAATGTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAACAAGATCTTGCTGTGTAGCCCTTTCGGGCCTGTTACAATGTA  347

seq1  GCCCAGACTGGCTTCCAGCTCTTGGGAGCACTCATATCTTAAACTCCAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGACTGGCTTCCAGCTCTTGGGAGCACTCATATCTTAAACTCCAAC  397

seq1  ATGCAAGCTTTCAACAAGATTAGTGATATGTTCTACATGGAAGTTTTATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGCTTTCAACAAGATTAGTGATATGTTCTACATGGAAGTTTTATT  447

seq1  GTATAGCCCAGGCTGGCTTCACATTTCAGAGGCTTGCTGGCATCTGCCTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCCCAGGCTGGCTTCACATTTCAGAGGCTTGCTGGCATCTGCCTC  497

seq1  TGGAATTCTGCAACCAAAGGTGTGCACTACAATGGCTCACCAATGAAGAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCTGCAACCAAAGGTGTGCACTACAATGGCTCACCAATGAAGAT  547

seq1  CTCAAAGTAACAGTAATAAAAGGGAATTCGTGAGCAGCAGGGGAGAAATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTAACAGTAATAAAAGGGAATTCGTGAGCAGCAGGGGAGAAATT  597

seq1  ATTTGAAAATCTAAAACACTAAAGAAAGTCAAGGAACTTTTTATAAACCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAATCTAAAACACTAAAGAAAGTCAAGGAACTTTTTATAAACCA  647

seq1  AATAAGACAATATGCCATGTATTTGAAACGGTAGTAGCCATTTCGAGAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACAATATGCCATGTATTTGAAACGGTAGTAGCCATTTCGAGAAA  697

seq1  TAGAGTTTGATGCTGGAGACCTGCCATAAATGCCAAGTCAGATTGGGCCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTGATGCTGGAGACCTGCCATAAATGCCAAGTCAGATTGGGCCT  747

seq1  GAGGTATGCTAGGGGACTCCCTCAAAACAAAGAAACAAACTGAACAAAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGCTAGGGGACTCCCTCAAAACAAAGAAACAAACTGAACAAAGA  797

seq1  AAAGGCAAGTGCATGTCCCTTAGGTCAGAGAACCACTGTGAAAGCTTTTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAGTGCATGTCCCTTAGGTCAGAGAACCACTGTGAAAGCTTTTA  847

seq1  ACTAGGAGAAGCAGTTAGTAGGTCAGAAACTATTTTAAATTGGGGATTCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAGAAGCAGTTAGTAGGTCAGAAACTATTTTAAATTGGGGATTCC  897

seq1  TTGAAAGTTTCTCAGAAGCAATGGGCTTCCACCAGGCTTTTCCCCTGAGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTTTCTCAGAAGCAATGGGCTTCCACCAGGCTTTTCCCCTGAGC  947

seq1  TGCCTTTAGTGGGAAATGAGGCAGCTTTCCTTTCTTTGCCTACACAGTAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAGTGGGAAATGAGGCAGCTTTCCTTTCTTTGCCTACACAGTAT  997

seq1  TTTCAGCCATCCTGGGTTTCCTCTACAGCTGCAGATGCTGTTGAGTTGCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCCATCCTGGGTTTCCTCTACAGCTGCAGATGCTGTTGAGTTGCA  1047

seq1  GTCATTTACTTAGCAGGAACCAGCTTAGACTGGCTTTGCTTTTCAAAGTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTACTTAGCAGGAACCAGCTTAGACTGGCTTTGCTTTTCAAAGTT  1097

seq1  ACAGGCCTTAAGAACTGGCTACTGAATTC  1122
      |||||||||||||||||||||||||||||
seq2  ACAGGCCTTAAGAACTGGCTACTGAATTC  1126