BAC Information

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BAC

Clone NameB6Ng01-262B08
Chromosome14 (Build37)
Map Location 84,997,899 - 84,999,032
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
Downstream geneLOC629794, LOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262B08.bB6Ng01-262B08.g
ACCGA066592GA066593
length1,1111,202
definitionB6Ng01-262B08.b B6Ng01-262B08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatactcctggttaaactgataggtaaatcttaaaccaaaaata
aacagatggcaaaaactaactatgcataacagtgccaaatagtagccttg
atgaagacttttaccttgttttcattttaatacttttaaaattatttaat
gtaggagttaagcattattagtatccttttgacagtctacttaaaattat
attatatttatacacatctcattcttatatgtattatatcccatccacac
tctgaacagatattgatgattttaaaaatcatgaaaacattactaaatgt
gtattctcatttttttttacatctcttcttcaaatagaatagaatttcca
tctgatattttttttttgccaagactgatagttttattatcttttgtatt
gcaggtttctcataataaaatgtctctgttttgttactctaaaactgtcc
agcttgcttcgttttttatgtatttttacccagaacatagatttttgagt
aggcatcttgccagtatttcaacatcacattttattaactctggcctcct
atacttctgaaaataaattggtctaattgatatcattattcctctctatt
tatcatattattttctttgaaaatgctggagagtatttcaaatatttctt
ctttggtgtttagtatgggtaatataatgtactgtaacagagattgcttt
gaatttattttgatttagtttgactgtcaaaatccagtgcctatgggaaa
tttcaaacaccgagtattctatacattctttccagcatattttccatcct
gcactttgactcctccctccctattcctgtttttgttttgttttttgttg
ttgtttgtttgtttgttgtttgttttgagacagggtttctctgtgtagcc
ctggctgtcctggaactcactctgtagaccaggctggcctcgaacttaga
aatccatccgcctgctctgctcccaagtgctgggataaaggtgtgcacac
actgactgcctccctcctgttcttacactgatattctatgtatttctcta
gattataatctctgtatccctatccttagatggagttgtcaggcagctgt
gcagcagtccc

gaattcaattcttattcccagcacctcagttatgtgccttcaacttcaac
tttagaagatatgacatccttttctaaattctatggacacttttccttat
acctggacatgccaggtttggcatggccttggtggggacagactgacatg
gtttccgagctgaaacagggccagcacatgtggacctccacaagtgtaga
tggctatcatgagcataagacttgtttgtataataatgtgcatatttttc
attcttcctttaaaaaatgtcctccatggttgtgttaatgactccatgat
aatcagacaacaggggtccaggaggtgaaggtttccctaatgtcttagca
aaatggtaaaggatcggaccttcaggacaagcaataaggctgtggaaaag
gactctaaaataatgagttgcacaatatataatttctcaatatgcaaaat
ataaagattcaatgtgaattatgaggggcttcacaaatctaaaagaataa
aggtagccacactatgaggcagctttgtcagaaataaacaaaagcaggca
gattcctgagtcaaaggtcagcctgggacacagtaagtccaagcccaggt
gagatagaaatggtaatttcaggacaagtccttctcagcaagtttatcct
taacagaggcaggcagatctctgaattcctttgcaatgttaaaagaaatg
tgtgcttgtggtctcctagaattaagggggatggggtcccaggatgctga
ttcatactataatccaaaggaaaccctgagtaaatgactggattgatata
taaaataaaagactgggcttattatctgcagcagaagagcaatccacaga
atagaatagcttggagaactatctctggcagaatatagagagaaaggaag
ctctatagagatcgctacagaaatcaaatcagaaagaaagaaaacagaac
agagagaaaacagactagaaaactgtctctagcagaatttcggccactag
cttggactcacatttgactcccaaatatcccttctctcagaagccctctc
aagctgagtggtccctggcataacccaaacatgtacatatattaaaaaat
aaattaaaattgattataatgccactagtgaagggtttaccactgtacaa
aagttattggcatggattatatacggaaaagtcacttttctctctatcca
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84997899_84999032
seq2: B6Ng01-262B08.b_43_1153

seq1  GAATTCTATACTCCTGGTTAAACTGATAGGTAAATCTTAAACCAAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACTCCTGGTTAAACTGATAGGTAAATCTTAAACCAAAAATA  50

seq1  AACAGATGGCAAAAACTAACTATGCATAACAGTGCCAAATAGTAGCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATGGCAAAAACTAACTATGCATAACAGTGCCAAATAGTAGCCTTG  100

seq1  ATGAAGACTTTTACCTTGTTTTCATTTTAATACTTTTAAAATTATTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACTTTTACCTTGTTTTCATTTTAATACTTTTAAAATTATTTAAT  150

seq1  GTAGGAGTTAAGCATTATTAGTATCCTTTTGACAGTCTACTTAAAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGTTAAGCATTATTAGTATCCTTTTGACAGTCTACTTAAAATTAT  200

seq1  ATTATATTTATACACATCTCATTCTTATATGTATTATATCCCATCCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTATACACATCTCATTCTTATATGTATTATATCCCATCCACAC  250

seq1  TCTGAACAGATATTGATGATTTTAAAAATCATGAAAACATTACTAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACAGATATTGATGATTTTAAAAATCATGAAAACATTACTAAATGT  300

seq1  GTATTCTCATTTTTTTTTACATCTCTTCTTCAAATAGAATAGAATTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTCATTTTTTTTTACATCTCTTCTTCAAATAGAATAGAATTTCCA  350

seq1  TCTGATATTTTTTTTTTGCCAAGACTGATAGTTTTATTATCTTTTGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATATTTTTTTTTTGCCAAGACTGATAGTTTTATTATCTTTTGTATT  400

seq1  GCAGGTTTCTCATAATAAAATGTCTCTGTTTTGTTACTCTAAAACTGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTTCTCATAATAAAATGTCTCTGTTTTGTTACTCTAAAACTGTCC  450

seq1  AGCTTGCTTCGTTTTTTATGTATTTTTACCCAGAACATAGATTTTTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTTCGTTTTTTATGTATTTTTACCCAGAACATAGATTTTTGAGT  500

seq1  AGGCATCTTGCCAGTATTTCAACATCACATTTTATTAACTCTGGCCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCTTGCCAGTATTTCAACATCACATTTTATTAACTCTGGCCTCCT  550

seq1  ATACTTCTGAAAATAAATTGGTCTAATTGATATCATTATTCCTCTCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCTGAAAATAAATTGGTCTAATTGATATCATTATTCCTCTCTATT  600

seq1  TATCATATTATTTTCTTTGAAAATGCTGGAGAGTATTTCAAATATTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATTATTTTCTTTGAAAATGCTGGAGAGTATTTCAAATATTTCTT  650

seq1  CTTTGGTGTTTAGTATGGGTAATATAATGTACTGTAACAGAGATTGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGTTTAGTATGGGTAATATAATGTACTGTAACAGAGATTGCTTT  700

seq1  GAATTTATTTTGATTTAGTTTGACTGTCAAAATCCAGTGCCTATGGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTTTGATTTAGTTTGACTGTCAAAATCCAGTGCCTATGGGAAA  750

seq1  TTTCAAACACCGAGTATTCTATACATTCTTTCCAGCATATTTTCCATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACACCGAGTATTCTATACATTCTTTCCAGCATATTTTCCATCCT  800

seq1  GCACTTTGACTCCTCCCTCCCTATTCCTGTTTTTGTTTTGTTTTTTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCACTTTGACTCCTCCCTCCCTATTCCTGTTTTTGTTTTGTTTTTTGTT-  849

seq1  GTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGAGACAGGGTTTCTCTGTGT  900
        ||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  -GTTGTTTGTTTGTTTG-TTGTTTG-TTTTGAGACAGGGTTTCTCTGTGT  896

seq1  AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACT  946

seq1  TAGAAATCCATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTG  1000
      |||||||||||||||||| ||||| |||||||||||||||| ||||||||
seq2  TAGAAATCCATCCGCCTG-CTCTG-CTCCCAAGTGCTGGGA-TAAAGGTG  993

seq1  TGCACCACCACTGACCTGCCTCCCTCCCTGTTCTTTACACTGGATAATTT  1050
      |||||   |||||| |||||||||| ||||||| ||||||| ||||  ||
seq2  TGCAC--ACACTGA-CTGCCTCCCT-CCTGTTC-TTACACT-GATA--TT  1035

seq1  CTATGTATTTTCTCTAAGATTTATAAATCTTCCTGTATCCCTATCCCTTA  1100
      ||||||| ||||||| ||| |||| |||||  ||||||||||||||  | 
seq2  CTATGTA-TTTCTCT-AGA-TTAT-AATCT--CTGTATCCCTATCC--TT  1077

seq1  AGAT-GAGTTGTCAGGGCAGCTGTGCAGCAGTCCC  1134
      |||| ||||||||| ||||||||||||||||||||
seq2  AGATGGAGTTGTCA-GGCAGCTGTGCAGCAGTCCC  1111


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