BAC Information

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BAC

Clone NameB6Ng01-262D13
Chromosome14 (Build37)
Map Location 52,075,791 - 52,185,601
singlet/doubletdoublet
Overlap geneEG638695, V2r10, LOC100043041, EG434459
Upstream geneOlfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247
Downstream geneLOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262D13.bB6Ng01-262D13.g
ACCGA066695GA066696
length1,1661,126
definitionB6Ng01-262D13.b B6Ng01-262D13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,184,419 - 52,185,601)(52,075,791 - 52,076,940)
sequence
gaattccccattctctgatttcagggctagttctcagcctgctggcctcc
tccatgctcagctcctctgagacttctagaagtgcctgcatgtccaagat
tcttgagaacaccttgccctggtctgcttgcaggccagcaagctcaaacc
tcctgtgaactccctgcaacccagcactgtctggatgtccaggatttcat
gggtccctgtccccagactccttaacataggcccatggaattcagaacct
ccattctccactcttgcctgtggatttcatattcaaatggactccaagga
gtcagggaaccccagcttccacctcccatgcgcaaggctacattcttaca
ccccctacttagtgtaattgcatttccatccaggtcaatatcagacagtg
ggcttaggataaatacaatctaccatgtctgcatttgatctgcccagtgg
cttttccacacctgtgcttcagggcagaaagcaaaaccacactaagacaa
ggaagtagtatagaggtgggataactgactgaagacttttgaaaggccat
gtggaaacctacaattgaagaaactttataatacacaaacccatataaag
gaggtttaaaagaaaataccctattatgctctgacaattcctcccctgaa
cacaatatactacccaatgaaaagcccagggccatgtttgggttatcttg
tttggggttgctcaatattgagtctcatacacactcccctatcattacag
actgctgccattgctcttccttcctttctggatgtcaatggtaagaccac
attgctgaagaagatggtatctggcacagccatcaattcaggcatgtatc
tcattattttctgtgtgttgagaacatatctattactctttagcagttac
ttggagatatttggcccattgcaacccaccaaatttctatagaagaggta
atcccttggtagctgagattgcatctccagaacacatcaccctcctaaat
ctggcaactgatattctacttcagcttctctgagtgggctaaactggaga
gggagccagggctcatgcacacagcagcaaacaggtacagagatacacta
cacttcacataacaacggacaactacctttatagtatctaacttagagac
cccagtcctcggtttc
gaattcactcttaatctcttccatggccctatcacttttgcacaccacaa
agttgagattcctaaattaaggaattttatgcaaacaatgaacactgcca
aatacccagtagatatttctcatactatactggagtggaattattttaat
tgttcaatctctaagaacagcagtaaaatggatctttttacatccaacaa
cacattggaatggacagcactgcacaactatgatatggccatgagtgatg
aaggttacaatttgtataatgctgtttatgttgcggcccacacctaccat
gaacacattcttcaacaagtagagtctcagaaaaaggtagaacacaacag
atatttcactgtttgtcagcaggtaaagtttcttatatttcattatgctt
agatatatcaatatgattttttaaatggacccagaggaacaactgtacat
ttgttagagattattctctcaatggaaagatttctacactgcaaaactcc
ctaataaatcttttacatggatgaatatcatgcacaaatataatatttaa
taggagacaatacatttttatgaatatcaatgagttttgtaaaaaggtgt
ctcacatttcactaaatgagttcaaaatttagaataggagccaagagttt
tatcataaaagccttaagtgataactagactagaatgttttactgaagaa
tagtttctcagaagttgataatgtactgtggatattatttagccatttaa
attaacaatttacaaaacataaatgactaagactgcacattttattaagt
ttatgtttattttatgagtatactgtatgcacatgaaaataatttgttta
ttttcacaatttctagatattcagacttccccttcattctctcatacatg
ggtttcattttttaaaaagtatttttgacaagcatgttcaccagaccacg
acgacgacagacgacgacgacagacgacaccacccacccccccctgtgtt
actgtatctggtatcattttttctagcacatttatcatctatcataatat
gaagtattataatttcagtaatcatgaggtatactgtattttttctacac
acgtttatttcattacagctgtcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_52184419_52185601
seq2: B6Ng01-262D13.b_41_1206 (reverse)

seq1  GAAACAGGAGGACTGGGGGTTCTCTAGTGTAGTATACTATAGTGAGGT-G  49
      |||||  |||||||||||  ||||||   ||| ||||||||   |||| |
seq2  GAAAC-CGAGGACTGGGG--TCTCTAAGTTAG-ATACTATA--AAGGTAG  44

seq1  TGGTGCGGTTTGTTATGGTGAAGTGTAGTGTATTCTCTTGTA-CTGTTTG  98
      | || ||  ||||||| ||||||||||||||| |||| |||| |||||||
seq2  TTGTCCG--TTGTTAT-GTGAAGTGTAGTGTA-TCTC-TGTACCTGTTTG  89

seq1  CTGCTTGGTGTGCATGAGGCCCTGGGCTCCCTCTCCAGTTTAGCCCACTC  148
      |||||  |||||||||| ||||| ||||||||||||||||||||||||||
seq2  CTGCT--GTGTGCATGA-GCCCT-GGCTCCCTCTCCAGTTTAGCCCACTC  135

seq1  AGAGAAGCTGAAGTTAGAATATCAGTTGCCAGATTTTAGGAGGGTGATGG  198
      ||||||||||||| ||||||||||||||||||| |||||||||||||| |
seq2  AGAGAAGCTGAAG-TAGAATATCAGTTGCCAGA-TTTAGGAGGGTGAT-G  182

seq1  TGTTCTGGGAGATGCAATCTCAGCTACCAAGGGATTACCTCTTCTATAGA  248
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCT-GGAGATGCAATCTCAGCTACCAAGGGATTACCTCTTCTATAGA  231

seq1  AATTTGGTGGGTTGCAATGGGCCAAATATCTCCAAGTAACTGCTAAAGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTGGGTTGCAATGGGCCAAATATCTCCAAGTAACTGCTAAAGAG  281

seq1  TAATAGATATGTTCTCAACACACAGAAAATAATGAGATACATGCCTGAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATATGTTCTCAACACACAGAAAATAATGAGATACATGCCTGAAT  331

seq1  TGATGGCTGTGCCAGATACCATCTTCTTCAGCAATGTGGTCTTACCATTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTGTGCCAGATACCATCTTCTTCAGCAATGTGGTCTTACCATTG  381

seq1  ACATCCAGAAAGGAAGGAAGAGCAATGGCAGCAGTCTGTAATGATAGGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAGAAAGGAAGGAAGAGCAATGGCAGCAGTCTGTAATGATAGGGG  431

seq1  AGTGTGTATGAGACTCAATATTGAGCAACCCCAAACAAGATAACCCAAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTATGAGACTCAATATTGAGCAACCCCAAACAAGATAACCCAAAC  481

seq1  ATGGCCCTGGGCTTTTCATTGGGTAGTATATTGTGTTCAGGGGAGGAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCTGGGCTTTTCATTGGGTAGTATATTGTGTTCAGGGGAGGAATT  531

seq1  GTCAGAGCATAATAGGGTATTTTCTTTTAAACCTCCTTTATATGGGTTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGCATAATAGGGTATTTTCTTTTAAACCTCCTTTATATGGGTTTG  581

seq1  TGTATTATAAAGTTTCTTCAATTGTAGGTTTCCACATGGCCTTTCAAAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATAAAGTTTCTTCAATTGTAGGTTTCCACATGGCCTTTCAAAAG  631

seq1  TCTTCAGTCAGTTATCCCACCTCTATACTACTTCCTTGTCTTAGTGTGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTCAGTTATCCCACCTCTATACTACTTCCTTGTCTTAGTGTGGT  681

seq1  TTTGCTTTCTGCCCTGAAGCACAGGTGTGGAAAAGCCACTGGGCAGATCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCTGCCCTGAAGCACAGGTGTGGAAAAGCCACTGGGCAGATCA  731

seq1  AATGCAGACATGGTAGATTGTATTTATCCTAAGCCCACTGTCTGATATTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGACATGGTAGATTGTATTTATCCTAAGCCCACTGTCTGATATTG  781

seq1  ACCTGGATGGAAATGCAATTACACTAAGTAGGGGGTGTAAGAATGTAGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGATGGAAATGCAATTACACTAAGTAGGGGGTGTAAGAATGTAGCC  831

seq1  TTGCGCATGGGAGGTGGAAGCTGGGGTTCCCTGACTCCTTGGAGTCCATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGCATGGGAGGTGGAAGCTGGGGTTCCCTGACTCCTTGGAGTCCATT  881

seq1  TGAATATGAAATCCACAGGCAAGAGTGGAGAATGGAGGTTCTGAATTCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGAAATCCACAGGCAAGAGTGGAGAATGGAGGTTCTGAATTCCA  931

seq1  TGGGCCTATGTTAAGGAGTCTGGGGACAGGGACCCATGAAATCCTGGACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTATGTTAAGGAGTCTGGGGACAGGGACCCATGAAATCCTGGACA  981

seq1  TCCAGACAGTGCTGGGTTGCAGGGAGTTCACAGGAGGTTTGAGCTTGCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACAGTGCTGGGTTGCAGGGAGTTCACAGGAGGTTTGAGCTTGCTG  1031

seq1  GCCTGCAAGCAGACCAGGGCAAGGTGTTCTCAAGAATCTTGGACATGCAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAAGCAGACCAGGGCAAGGTGTTCTCAAGAATCTTGGACATGCAG  1081

seq1  GCACTTCTAGAAGTCTCAGAGGAGCTGAGCATGGAGGAGGCCAGCAGGCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCTAGAAGTCTCAGAGGAGCTGAGCATGGAGGAGGCCAGCAGGCT  1131

seq1  GAGAACTAGCCCTGAAATCAGAGAATGGGGAATTC  1183
      |||||||||||||||||||||||||||||||||||
seq2  GAGAACTAGCCCTGAAATCAGAGAATGGGGAATTC  1166

seq1: chr14_52075791_52076940
seq2: B6Ng01-262D13.g_65_1190

seq1  GAATTCACTCTTAATCTCTTCCATGGCCCTATCACTTTTGCACACCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTAATCTCTTCCATGGCCCTATCACTTTTGCACACCACAA  50

seq1  AGTTGAGATTCCTAAATTAAGGAATTTTATGCAAACAATGAACACTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGATTCCTAAATTAAGGAATTTTATGCAAACAATGAACACTGCCA  100

seq1  AATACCCAGTAGATATTTCTCATACTATACTGGAGTGGAATTATTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCAGTAGATATTTCTCATACTATACTGGAGTGGAATTATTTTAAT  150

seq1  TGTTCAATCTCTAAGAACAGCAGTAAAATGGATCTTTTTACATCCAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATCTCTAAGAACAGCAGTAAAATGGATCTTTTTACATCCAACAA  200

seq1  CACATTGGAATGGACAGCACTGCACAACTATGATATGGCCATGAGTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGAATGGACAGCACTGCACAACTATGATATGGCCATGAGTGATG  250

seq1  AAGGTTACAATTTGTATAATGCTGTTTATGTTGCGGCCCACACCTACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTACAATTTGTATAATGCTGTTTATGTTGCGGCCCACACCTACCAT  300

seq1  GAACACATTCTTCAACAAGTAGAGTCTCAGAAAAAGGTAGAACACAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACATTCTTCAACAAGTAGAGTCTCAGAAAAAGGTAGAACACAACAG  350

seq1  ATATTTCACTGTTTGTCAGCAGGTAAAGTTTCTTATATTTCATTATGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCACTGTTTGTCAGCAGGTAAAGTTTCTTATATTTCATTATGCTT  400

seq1  AGATATATCAATATGATTTTTTAAATGGACCCAGAGGAACAACTGTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATCAATATGATTTTTTAAATGGACCCAGAGGAACAACTGTACAT  450

seq1  TTGTTAGAGATTATTCTCTCAATGGAAAGATTTCTACACTGCAAAACTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGAGATTATTCTCTCAATGGAAAGATTTCTACACTGCAAAACTCC  500

seq1  CTAATAAATCTTTTACATGGATGAATATCATGCACAAATATAATATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAATCTTTTACATGGATGAATATCATGCACAAATATAATATTTAA  550

seq1  TAGGAGACAATACATTTTTATGAATATCAATGAGTTTTGTAAAAAGGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGACAATACATTTTTATGAATATCAATGAGTTTTGTAAAAAGGTGT  600

seq1  CTCACATTTCACTAAATGAGTTCAAAATTTAGAATAGGAGCCAAGAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTTCACTAAATGAGTTCAAAATTTAGAATAGGAGCCAAGAGTTT  650

seq1  TATCATAAAAGCCTTAAGTGATAACTAGACTAGAATGTTTTACTGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAAAAGCCTTAAGTGATAACTAGACTAGAATGTTTTACTGAAGAA  700

seq1  TAGTTTCTCAGAAGTTGATAATGTACTGTGGATATTATTTAGCCATTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTCAGAAGTTGATAATGTACTGTGGATATTATTTAGCCATTTAA  750

seq1  ATTAACAATTTACAAAACATAAATGACTAAGACTGCACATTTTATTAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAATTTACAAAACATAAATGACTAAGACTGCACATTTTATTAAGT  800

seq1  TTATGTTTATTTTATGAGTATACTGTATGCACATGAAAATAATTTGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTATTTTATGAGTATACTGTATGCACATGAAAATAATTTGTTTA  850

seq1  TTTTCACAATTTCTAGATATTCAGACTTCCCCTTCATTCTCTCATACAT-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTCACAATTTCTAGATATTCAGACTTCCCCTTCATTCTCTCATACATG  900

seq1  GGTTTCATTTTTTAAAAAGTATTTTTGACAAGCATGTTCACACAGACACA  949
      ||||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  GGTTTCATTTTTTAAAAAGTATTTTTGACAAGCATGTTCAC-CAGAC-CA  948

seq1  CAGACAGACAGACAGACAGACAGACAGACAGACAGACACACACACACACA  999
      | ||| ||| ||||||| ||| ||| ||||||| |||||         ||
seq2  C-GAC-GAC-GACAGAC-GAC-GAC-GACAGAC-GACAC---------CA  982

seq1  CACACACACACACTGTGTTACTTGTTATCTGGTAATCATTTTTTCTAGCA  1049
      | ||| | | | ||||||||||   |||||||| ||||||||||||||||
seq2  CCCAC-CCCCCCCTGTGTTACT--GTATCTGGT-ATCATTTTTTCTAGCA  1028

seq1  CATTTTATCATCTATCATTAATATGAAGTATATAAATTTTCAGTTATCAA  1099
      || |||||||||||||| ||||||||||||| || | ||||||| ||| |
seq2  CA-TTTATCATCTATCA-TAATATGAAGTAT-TATAATTTCAGTAATC-A  1074

seq1  TGAGGTATACTGTA-TTTTTCTACACACGTTTATTTCAATACAGCTGTCT  1148
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  TGAGGTATACTGTATTTTTTCTACACACGTTTATTTCATTACAGCTGTCT  1124

seq1  TT  1150
      ||
seq2  TT  1126