BAC Information

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BAC

Clone NameB6Ng01-262E13
Chromosome14 (Build37)
Map Location 4,739,256 - 4,911,917
singlet/doubletdoublet
Overlap geneEG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007
Upstream geneLOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555
Downstream geneLOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262E13.bB6Ng01-262E13.g
ACCGA066741GA066742
length1,1611,123
definitionB6Ng01-262E13.b B6Ng01-262E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,739,256 - 4,740,410)(4,910,771 - 4,911,917)
sequence
gaattcagaaatctgcctgcctctgcttcccaagtgctgggattaaagta
gtgtgccactatgacctggcttctccagggctttctatccctctaaagta
atcacggagtcgttgggtctcccttgaaacatctcctcttcatagtctga
attatcttggtcctgacccataacagatacctcattattttgtgctcagt
tatgattttatgtgaatcagtctgtgtgtgcttctgtgtgtgtctttgtc
tgtgacagtgtgtctgtgtgtttctttttgtgcatgcattgttttcgtga
cctgtgtctctctcagtatgttgggaggccattcagtgacatctgagttg
tgcagttattctctatattacttctttgagcattggtctctcaataaaag
tgacatttcctgttttgttctgtccagtagtctttgcatctcctgttcac
tatcaggtagcaccccctctctcatttatttcaacaaattgataaacaac
acagctattttaaaaataagtgttagattgcttcactttccctgcataga
tttatctccctgggagatttgggtttgtcttattggctccaccatgaaca
tgcatagaatcctaccgtgcatccctctgctaacatggtttttgtaacta
tattgtgggcatggctttgtttcaggatagattcctcttcatagttggca
cagtgctgcatttcataaatgtcacagcacgttatttcaccagctttctt
cctactgatattgaggaagatttaatatcacatgaactttaataggttga
aaactttctgggtagtgacccaaagtcactgtcttcctctgatgctacca
aggaaccagtgtagttgtagggaaggctactgagagagtcaacatggggc
ttgctggagcttttcttaggaatctatttcttgggaatttggtattgtgt
tgtccaggttatctgtgcagagcttgtaacttcctggtaggatcagaaag
catctgcaataaaaaattttgaagaaggagttaattacagatgaggcaca
aagactgccttgagtctaagaacccttatatctcatacacatcagaaggg
tccagttagctgctcattgcaacaagaaatgtggctggggcgcacggtaa
aattttcattg
gaattctaatgctcaggacatagaggcaggggatcagtgctgcaaggcta
tcctcatttacaaaggccagcctgggctacatcaaactctgtctcaaaac
caaactaacaaaaggccagagtttaagtaattaaccttgtttgaaatact
ttttgtaaatatttcatgatacactaaagtatttgcatactaaaatggac
attgcattacttgagacatttgaaaagtgtctaggcattctcttattgaa
aacattgtaaaagctggcaatgggtattttaattatactgctcagaaggc
tgaggcaagaggatggtaaatttgactatagcctggcctatcttgtaagg
ccttatctcaaaacaacaataagacatgtatgtagtcagacatactgtct
tagttagggtttcatttctatgaagagacaccttgaccaaggcaacaaag
ggagaacatttaattggggatggcttacaggttcagaggttcagtccaat
attatcaaggcaggagcatggcagtgtccaggcaggcatggtataggaat
atttgagaattccacatcttgttccaaagtcaagcatgagaagactagca
tccaggcatctaggaggagagtctacaagcccacccccacactgtcacac
ttcttccaataaggccaagccttctttaacaaggcaacacctcctaatag
tgccactccctgggccaagcatatttcaaacccacacatactaacaatac
aagaggctacaggaaagaattctagccatgagagaaatcccatcttccat
tgatctctggtttcctctcagaggcaatcgtaagtgatgttttcttgcgg
tgcttccagaaaatctctatgcacttacaagtgttatatattatttatgt
acaacatacatgtagaatatatatatatatatatatatatacacatatat
ataacccccccgcatattatattatatgcatttatacattttttaagaat
aacaaatatatcatgggtataataacctgtagtcccagcactaggaaatc
tgatgcagagatgcctaaagaatcagcttacctgggtgaacatagtggag
accctcctctcaaaaaataacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4739256_4740410
seq2: B6Ng01-262E13.b_45_1205

seq1  GAATTCAGAAATCTGCCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTGCCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGTA  50

seq1  GTGTGCCACTATGACCTGGCTTCTCCAGGGCTTTTTATCCCTCTAAAGTA  100
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGTGCCACTATGACCTGGCTTCTCCAGGGCTTTCTATCCCTCTAAAGTA  100

seq1  ATCACAGAGTCGTTGGGTCTCCCTTGAAACATCTCCTCTGCATAGTCTGA  150
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCACGGAGTCGTTGGGTCTCCCTTGAAACATCTCCTCTTCATAGTCTGA  150

seq1  ATTATCTTGGTCCTGAACCATAACAGATACCTCATTATTTTGTGCTCAGT  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTATCTTGGTCCTGACCCATAACAGATACCTCATTATTTTGTGCTCAGT  200

seq1  TATGATTTTATGTGAATCAGTCTGTGTGTGCTTCTGTGTGTGTCTTTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTTATGTGAATCAGTCTGTGTGTGCTTCTGTGTGTGTCTTTGTC  250

seq1  TGTGACAGTGTGTCTGTGTGTTTCTTTTTGTGTATGCATTGTTTTCGTGA  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTGACAGTGTGTCTGTGTGTTTCTTTTTGTGCATGCATTGTTTTCGTGA  300

seq1  CCTGTGTCTCTCTCAGTATGTTGGGAGGCCATTCAGTGACATCTGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCTCTCTCAGTATGTTGGGAGGCCATTCAGTGACATCTGAGTTG  350

seq1  TGCAGTTATTCTCTATATTACTTCTTTGAGCATTGGTCTCTCAATAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTATTCTCTATATTACTTCTTTGAGCATTGGTCTCTCAATAAAAG  400

seq1  TGACATTTCCTGTTTTGTTCTGTCCAGTAGTCTTTGCATCTCCTGTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTCCTGTTTTGTTCTGTCCAGTAGTCTTTGCATCTCCTGTTCAC  450

seq1  TATCAGGTAGCACCCCCTCTCACATTTATTTCAACAAATTGATAAACAAC  500
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATCAGGTAGCACCCCCTCTCTCATTTATTTCAACAAATTGATAAACAAC  500

seq1  ACAGCTATTTTAAAAATAAGTGTTAGATTGCTTCACTTTCCCTGCATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATTTTAAAAATAAGTGTTAGATTGCTTCACTTTCCCTGCATAGA  550

seq1  TTTATCTCCCTGGGAGATTTGGGTTTGTCTTATTGGCTCCACCATGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCCCTGGGAGATTTGGGTTTGTCTTATTGGCTCCACCATGAACA  600

seq1  TGCATAGAATCCTACCGTGCATCCCTCTGCTAACATGGTTTTTGTAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGAATCCTACCGTGCATCCCTCTGCTAACATGGTTTTTGTAACTA  650

seq1  TATTGTGGGCATGGCTTTGTTTCAGGATAGATTCCTCTTCATAGTTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGGGCATGGCTTTGTTTCAGGATAGATTCCTCTTCATAGTTGGCA  700

seq1  CAGTGCTGCATTTCATAAATGTCACAGCACGTTATTTCACCAGCTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGCATTTCATAAATGTCACAGCACGTTATTTCACCAGCTTTCTT  750

seq1  CCTACTGATATTGAGGAAGATTTAATATCACATGAACTGTAATAGGTTGA  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTACTGATATTGAGGAAGATTTAATATCACATGAACTTTAATAGGTTGA  800

seq1  AAAGTTCCTGGGTAGTGACCAAAAGTCACTGTCTTCCTCTGATGCTACCA  850
      ||| || ||||||||||||| |||||||||||||||||||||||||||||
seq2  AAACTTTCTGGGTAGTGACCCAAAGTCACTGTCTTCCTCTGATGCTACCA  850

seq1  AGGAACCAGTGTAGTTGTAGGGAAGGCTACTGAGAGAGTCAACATGGGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCAGTGTAGTTGTAGGGAAGGCTACTGAGAGAGTCAACATGGGGC  900

seq1  TTGCTGGAGGCTTTTCTTAGGAATCTCTTTCTTGGGAATTTGGTATTGTG  950
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TTGCTGGA-GCTTTTCTTAGGAATCTATTTCTTGGGAATTTGGTATTGTG  949

seq1  TTGTCCAGGTTATCTGTGCAGAGCTTGTAACTTCCTGGTAGTATCAGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGTCCAGGTTATCTGTGCAGAGCTTGTAACTTCCTGGTAGGATCAGAAA  999

seq1  GCATCTGCATAAAAAAATTTTTGAAG-AGGAGTTAATTACAGATGAGGGC  1049
      ||||||||| | ||||| |||||||| |||||||||||||||||||||  
seq2  GCATCTGCA-ATAAAAAATTTTGAAGAAGGAGTTAATTACAGATGAGG--  1046

seq1  CACAAAGACTGCC-TGAGTCTAAGAA-CCTTATA-CTCATACACATCAGA  1096
      ||||||||||||| |||||||||||| ||||||| |||||||||||||||
seq2  CACAAAGACTGCCTTGAGTCTAAGAACCCTTATATCTCATACACATCAGA  1096

seq1  --GGTCCCAGTAGCTGCTCA-TGCAACAGGAAATGT-GCT-GGGCG-ACA  1140
        |||||   |||||||||| ||||||| ||||||| ||| ||||| || 
seq2  AGGGTCCAGTTAGCTGCTCATTGCAACAAGAAATGTGGCTGGGGCGCACG  1146

seq1  GTAATATTTTCATTG  1155
      |||| ||||||||||
seq2  GTAAAATTTTCATTG  1161

seq1: chr14_4910771_4911917
seq2: B6Ng01-262E13.g_69_1191 (reverse)

seq1  ATGTCTATTTTTTGAGA-GAGGGTCT-CACTATG-TCACCCAGGTTAGCC  47
      |||| |||||||||||| |||||||| ||||||| |||||||||| ||| 
seq2  ATGT-TATTTTTTGAGAGGAGGGTCTCCACTATGTTCACCCAGGTAAGC-  48

seq1  TTGA-TCTTTAGGCAATCCTCCTGCATCAGTTTCCCTGGTGCTGGGACTA  96
       ||| ||||||||| |||   ||||||||| || ||| ||||||||||||
seq2  -TGATTCTTTAGGC-ATC--TCTGCATCAGATTTCCTAGTGCTGGGACTA  94

seq1  CAGGT--ATATA-CCATGATA-GTTGGTTA-TCTTAAAAAATGTATAAAT  141
      |||||   |||| ||||||||  || |||| |||||||||||||||||||
seq2  CAGGTTATTATACCCATGATATATTTGTTATTCTTAAAAAATGTATAAAT  144

seq1  GCATATA----TATATGCGTGTGTGTT-TATATATGTGTATATATATATG  186
      |||||||     ||||||| | | ||| ||||||||||||||||      
seq2  GCATATAATATAATATGCGGGGGGGTTATATATATGTGTATATA------  188

seq1  TATGTATATATATATATATGTATATATATATATATATATTCTTACATGTA  236
                          ||||||||||||||||||||| ||||||||
seq2  --------------------TATATATATATATATATATTC-TACATGTA  217

seq1  TGTTGTACATAAATAATATATAACACTTGTAAGTGCATAGAGATTTTCTG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTACATAAATAATATATAACACTTGTAAGTGCATAGAGATTTTCTG  267

seq1  GAACCCCCGCAAGAAAACATCACTTATGATTGCCTCTGAGAGGAAACCAG  336
      ||| | |||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAGCACCGCAAGAAAACATCACTTACGATTGCCTCTGAGAGGAAACCAG  317

seq1  AGATCAGTGGAAGATGGGATTTCTCTCATGGCTAGAATCCTTT-CTGTAG  385
      |||||| ||||||||||||||||||||||||||||||| |||| ||||||
seq2  AGATCAATGGAAGATGGGATTTCTCTCATGGCTAGAATTCTTTCCTGTAG  367

seq1  CCTCTTGTATTGTTAGTATGTGTGGGTTTG-AATATGCTTGGCCCAGGGA  434
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTCTTGTATTGTTAGTATGTGTGGGTTTGAAATATGCTTGGCCCAGGGA  417

seq1  GTGGCACTATTAGGAGGTGTGGCCTTGTTAAAGAAGGCATGGCCTTATTG  484
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  GTGGCACTATTAGGAGGTGTTGCCTTGTTAAAGAAGGCTTGGCCTTATTG  467

seq1  GAAGAAGTGTGACAGTGTGGGGGTGGGCTTGTAGACTCTCCTCCTAGCTG  534
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAGAAGTGTGACAGTGTGGGGGTGGGCTTGTAGACTCTCCTCCTAGATG  517

seq1  CCTGGATGCTAGTCTTCTCCTGCTTGACTTTGGAACAAGATGTGGAATTC  584
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTGGATGCTAGTCTTCTCATGCTTGACTTTGGAACAAGATGTGGAATTC  567

seq1  TCAAATATTCCTATACCATGCCTGCCTGGACACTGCCGTGCTCCTGCCTT  634
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAAATATTCCTATACCATGCCTGCCTGGACACTGCCATGCTCCTGCCTT  617

seq1  GATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATG  684
      ||| ||| |||||||||||||||||||||||||||| |||||||||||||
seq2  GATAATATTGGACTGAACCTCTGAACCTGTAAGCCATCCCCAATTAAATG  667

seq1  TTCTCGCTCTGTTGCCTTGGTCAAGGTGTCTTTTCATAGAAATGAAACCC  734
      ||||| || |||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTCCCTTTGTTGCCTTGGTCAAGGTGTCTCTTCATAGAAATGAAACCC  717

seq1  TAACTAAGACAGTATGTCTGAC----TACATGTCTTATTGTTGTTTTGAG  780
      ||||||||||||||||||||||    ||||||||||||||||||||||||
seq2  TAACTAAGACAGTATGTCTGACTACATACATGTCTTATTGTTGTTTTGAG  767

seq1  ATAGGGCCTTACAAGATAGGCCAGGCTATAGTCAAATTTACCATCCTCTT  830
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCCTTACAAGATAGGCCAGGCTATAGTCAAATTTACCATCCTCTT  817

seq1  GCCTCAGCCTTCTGAGCAGTATAATTAAAATACCCATTGCCAGCTTGTAC  880
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCCTCAGCCTTCTGAGCAGTATAATTAAAATACCCATTGCCAGCTTTTAC  867

seq1  AATGTTTTCAATTAAGAAAATGCCTAGACACTTTTCAAATGTCTCAAGTA  930
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  AATGTTTTCAA-TAAGAGAATGCCTAGACACTTTTCAAATGTCTCAAGTA  916

seq1  AAGCAATGTCCATTTTAGTATGCAAATACTTTAGTGTATCATGAAATATT  980
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATGTCCATTTTAGTATGCAAATACTTTAGTGTATCATGAAATATT  966

seq1  TACAAAAAGTATTTCAAACAAGGTTAATTACTTAAACTCTGGCCTTTTGT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAGTATTTCAAACAAGGTTAATTACTTAAACTCTGGCCTTTTGT  1016

seq1  TAGTTTGGTTTTGAGACAGAGTTTGATGTATCCCAGGCTGGCCTGGGACT  1080
      |||||||||||||||||||||||||||||| ||||||||||         
seq2  TAGTTTGGTTTTGAGACAGAGTTTGATGTAGCCCAGGCTGG---------  1057

seq1  CCCTTTGTAAATGAGGAGAGCCTTGCAGCACTGATCCCCTGCCTCTATGT  1130
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  -CCTTTGTAAATGAGGATAGCCTTGCAGCACTGATCCCCTGCCTCTATGT  1106

seq1  CCTGAGCATTAGAATTC  1147
      |||||||||||||||||
seq2  CCTGAGCATTAGAATTC  1123