BAC Information

Click to search

BAC

Clone NameB6Ng01-262G19
Chromosome14 (Build37)
Map Location 86,654,738 - 86,794,623
singlet/doubletdoublet
Overlap geneEG629815, LOC100043306, LOC100043778
Upstream geneLOC668603, LOC100043301
Downstream geneLOC100043310, LOC100043311, Diap3, EG665324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262G19.bB6Ng01-262G19.g
ACCGA066843GA066844
length1,1131,185
definitionB6Ng01-262G19.b B6Ng01-262G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,793,500 - 86,794,623)(86,654,738 - 86,655,920)
sequence
gaattccttagatgcagcaatcattgttgttgaggcttcacaactaacat
cttggtttctggtaaggtctatttttactgatgtacatttcatttcaact
catttttttttctgctttaaaacctttaccttcacttactagcatatagt
gatcctaactgcatttgctagcaaacttacatagaagccagtctttgaga
ctatttacggtgacctaataaagaagtagagaagagacagcagggatgaa
gaggtggctcttctggaggactgatggcttttcaggaggaaagaagaatg
ttgtactgatagctgtactgtatgggaattctgcagtgaagacaggtaca
gatactctggtaggacaggtgttcagtattaagtctatgagaaaggaatt
caatgactaaagaggtccaaactttctgcagagttcaggtgagttgactt
ttgaggtctacaccatggctcttcctccagagtgacagccagcttgaatg
atcctgttcttactttctcgggagaatctcttgagttccacactgactat
ttttgaataggctacatacaggaacatctcccctccagatgatttcttga
tgacagcttgcagtcagttctgtgctcaatgtgggatgtagggatttagg
atttggttcctggggttgttgttgtgccatatccccatcctcaggtttat
tacactaagcctattccaaatatatgttacagaacatagggaaaaatgtg
aggaatcaatgtggaaaaaaaatctcattgtcttcagtgctgagactagg
gcctcttgagcacatgacctttaaaatgtttgcaaccttagtgctgcagg
aagagaggtagaacagggcattactctgaggttaaagtataactattatc
tcttgtgtttggttggctggaagatatacccgtggcaatggctgtcaggt
ctatcaattcttttttccctagtcttttttttttttctttctggaagacc
aaatgtgtacatccttattacagatctccagaatatagaacattggaagg
ctggaactatcaacaataaaaagagactgatctgaacatgctcagatacc
ctgaaccaaccat

gaattcacttcactcatgtttttactgaacagacagataaattctggtaa
attcatgaaaataaagacaagtaagaagtgctaattcatataaagactaa
gacaaatgcaggggaaacaatgtagcccttactctagactaccctccaac
ccagcctttaattaacagcatgcattagttacatcatttaaaattatcaa
tgttacaactaatgcatccaagactgactttacaaaataaattcattgtc
tttggtactttttgcttgactttaacagggtcttactctggaatccttgc
taccctggaaagatatagtccagacaggccttgaacctagtaattctttt
gcttctacctcataaatgctgagattacaggtgtctacaaccacacctgg
caacatgcctattttgaaactggattgtaaaagaaacactgtctctaggg
cctaccttctaacataacaatcattcctataaaaaacccaagattcagac
aaagtgcctaaaataactatctgaaaataaactaacttaaagaaaaaaat
cctcataaataacacaaaataaatcatagtatgatgcttttgttttaaat
aaaaaaatatgtatttaaaatagttaccaggggttaagattattcagatt
tctagagtagtcttcattttcaaaaccctactgacataaatttctcttag
aaattaagtctgtgttcgtccctttcctcttctccctctctcccactgcc
tttcctcttccagtaaaaaggagctaaaatgaacctcgtaattggtctcc
gctcagactgaacacacaagacagaggccatctatctattaagagggttt
tcacacatgatgacgggtcatacctgactaccctaagagaaatgggaaaa
ccaattctcaaaaagtaattaggcacaatgtttttagaggagggagagaa
atttggggatttaggttatttccagagccattttcagtttctaatcgaac
atgtgacagcttgagtcatccactcccatcaagatgagaggggaaagccc
agcaacttgaaaatcaaagctcttagcagatgcagtagcacttaccttgt
tagccagtgctagaactgagggggcaggaacaggcagacctgaaacatca
gcagcacagaaagcctctctgttctggagagaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_86793500_86794623
seq2: B6Ng01-262G19.b_49_1161 (reverse)

seq1  ATGGTTTGTTCAGGGGTATCCTGAGCATG-TCAGATCAAGTTCTTTTTAT  49
      |||||| ||||| |||||| ||||||||| ||||||||   |||||||||
seq2  ATGGTTGGTTCA-GGGTAT-CTGAGCATGTTCAGATCAGTCTCTTTTTAT  48

seq1  TGTTG-TAGTTTCCAGCCTTCAAATTGTTTTTTTTTTTTTTCTGAGATCT  98
      ||||| ||| ||||||||||| || |||| | | || |     |||||||
seq2  TGTTGATAG-TTCCAGCCTTCCAA-TGTTCTATATTCT----GGAGATCT  92

seq1  GTAATAGGATTGTACCACATTTGGTCTTCAAGAAAGAAAAAAAAAAAAAG  148
      |||||| |  |||| |||||||||||||| |||||| |||||||||||||
seq2  GTAATAAGGATGTA-CACATTTGGTCTTCCAGAAAG-AAAAAAAAAAAAG  140

seq1  ACTAGGGAAAAAAAGAATTGATAGACCCTGACAGCCATTGCCACGGGTAT  198
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTAGGG-AAAAAAGAATTGATAGA-CCTGACAGCCATTGCCACGGGTAT  188

seq1  ATCCTTCCAGCCAACCAAACACAAGAGATAATAGTTATACTTTAACCTCA  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-CTTCCAGCCAACCAAACACAAGAGATAATAGTTATACTTTAACCTCA  237

seq1  GAGTAATGCCCTGTTCTACCTCTCTTCCTGCAGCACTAAGGTTGCAAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATGCCCTGTTCTACCTCTCTTCCTGCAGCACTAAGGTTGCAAACA  287

seq1  TTTTAAAGGTCATGTGCTCAAGAGGCCCTAGTCTCAGCACTGAAGACAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGTCATGTGCTCAAGAGGCCCTAGTCTCAGCACTGAAGACAAT  337

seq1  GAGATTTTTTTTCCACATTGATTCCTCACATTTTTCCCTATGTTCTGTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTTTTTCCACATTGATTCCTCACATTTTTCCCTATGTTCTGTAA  387

seq1  CATATATTTGGAATAGGCTTAGTGTAATAAACCTGAGGATGGGGATATGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTTGGAATAGGCTTAGTGTAATAAACCTGAGGATGGGGATATGG  437

seq1  CACAACAACAACCCCAGGAACCAAATCCTAAATCCCTACATCCCACATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAACAACCCCAGGAACCAAATCCTAAATCCCTACATCCCACATTG  487

seq1  AGCACAGAACTGACTGCAAGCTGTCATCAAGAAATCATCTGGAGGGGAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGAACTGACTGCAAGCTGTCATCAAGAAATCATCTGGAGGGGAGA  537

seq1  TGTTCCTGTATGTAGCCTATTCAAAAATAGTCAGTGTGGAACTCAAGAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGTATGTAGCCTATTCAAAAATAGTCAGTGTGGAACTCAAGAGA  587

seq1  TTCTCCCGAGAAAGTAAGAACAGGATCATTCAAGCTGGCTGTCACTCTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCGAGAAAGTAAGAACAGGATCATTCAAGCTGGCTGTCACTCTGG  637

seq1  AGGAAGAGCCATGGTGTAGACCTCAAAAGTCAACTCACCTGAACTCTGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGCCATGGTGTAGACCTCAAAAGTCAACTCACCTGAACTCTGCA  687

seq1  GAAAGTTTGGACCTCTTTAGTCATTGAATTCCTTTCTCATAGACTTAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTGGACCTCTTTAGTCATTGAATTCCTTTCTCATAGACTTAATA  737

seq1  CTGAACACCTGTCCTACCAGAGTATCTGTACCTGTCTTCACTGCAGAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACCTGTCCTACCAGAGTATCTGTACCTGTCTTCACTGCAGAATT  787

seq1  CCCATACAGTACAGCTATCAGTACAACATTCTTCTTTCCTCCTGAAAAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACAGTACAGCTATCAGTACAACATTCTTCTTTCCTCCTGAAAAGC  837

seq1  CATCAGTCCTCCAGAAGAGCCACCTCTTCATCCCTGCTGTCTCTTCTCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCCTCCAGAAGAGCCACCTCTTCATCCCTGCTGTCTCTTCTCTA  887

seq1  CTTCTTTATTAGGTCACCGTAAATAGTCTCAAAGACTGGCTTCTATGTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTATTAGGTCACCGTAAATAGTCTCAAAGACTGGCTTCTATGTAA  937

seq1  GTTTGCTAGCAAATGCAGTTAGGATCACTATATGCTAGTAAGTGAAGGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTAGCAAATGCAGTTAGGATCACTATATGCTAGTAAGTGAAGGTA  987

seq1  AAGGTTTTAAAGCAGAAAAAAAAATGAGTTGAAATGAAATGTACATCAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTAAAGCAGAAAAAAAAATGAGTTGAAATGAAATGTACATCAGT  1037

seq1  AAAAATAGACCTTACCAGAAACCAAGATGTTAGTTGTGAAGCCTCAACAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGACCTTACCAGAAACCAAGATGTTAGTTGTGAAGCCTCAACAA  1087

seq1  CAATGATTGCTGCATCTAAGGAATTC  1124
      ||||||||||||||||||||||||||
seq2  CAATGATTGCTGCATCTAAGGAATTC  1113


seq1: chr14_86654738_86655920
seq2: B6Ng01-262G19.g_65_1249

seq1  GAATTCACTTCACTCATGTTTTTACTGAACAGACAGATAAATTCTGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCACTCATGTTTTTACTGAACAGACAGATAAATTCTGGTAA  50

seq1  ATTCATGAAAATAAAGACAAGTAAGAAGTGCTAATTCATATAAAGACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAAAATAAAGACAAGTAAGAAGTGCTAATTCATATAAAGACTAA  100

seq1  GACAAATGCAGGGGAAACAATGTAGCCCTTACTCTAGACTACCCTCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGCAGGGGAAACAATGTAGCCCTTACTCTAGACTACCCTCCAAC  150

seq1  CCAGCCTTTAATTAACAGCATGCATTAGTTACATCATTTAAAATTATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTTAATTAACAGCATGCATTAGTTACATCATTTAAAATTATCAA  200

seq1  TGTTACAACTAATGCATCCAAGACTGACTTTACAAAATAAATTCATTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAACTAATGCATCCAAGACTGACTTTACAAAATAAATTCATTGTC  250

seq1  TTTGGTACTTTTTGCTTGACTTTAACAGGGTCTTACTCTGGAATCCTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTACTTTTTGCTTGACTTTAACAGGGTCTTACTCTGGAATCCTTGC  300

seq1  TACCCTGGAAAGATATAGTCCAGACAGGCCTTGAACCTAGTAATTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGGAAAGATATAGTCCAGACAGGCCTTGAACCTAGTAATTCTTTT  350

seq1  GCTTCTACCTCATAAATGCTGAGATTACAGGTGTCTACAACCACACCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACCTCATAAATGCTGAGATTACAGGTGTCTACAACCACACCTGG  400

seq1  CAACATGCCTATTTTGAAACTGGATTGTAAAAGAAACACTGTCTCTAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGCCTATTTTGAAACTGGATTGTAAAAGAAACACTGTCTCTAGGG  450

seq1  CCTACCTTCTAACATAACAATCATTCCTATAAAAAACCCAAGATTCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTTCTAACATAACAATCATTCCTATAAAAAACCCAAGATTCAGAC  500

seq1  AAAGTGCCTAAAATAACTATCTGAAAATAAACTAACTTAAAGAAAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCCTAAAATAACTATCTGAAAATAAACTAACTTAAAGAAAAAAAT  550

seq1  CCTCATAAATAACACAAAATAAATCATAGTATGATGCTTTTGTTTTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAAATAACACAAAATAAATCATAGTATGATGCTTTTGTTTTAAAT  600

seq1  AAAAAAATATGTATTTAAAATAGTTACCAGGGGTTAAGATTATTCAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATGTATTTAAAATAGTTACCAGGGGTTAAGATTATTCAGATT  650

seq1  TCTAGAGTAGTCTTCATTTTCAAAACCCTACTGACATAAATTTCTCTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTAGTCTTCATTTTCAAAACCCTACTGACATAAATTTCTCTTAG  700

seq1  AAATTAAGTCTGTGTTCGTCCCTTTCCTCTTCTCCCTCTCTCCCACTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGTCTGTGTTCGTCCCTTTCCTCTTCTCCCTCTCTCCCACTGCC  750

seq1  TTTCCTCTTCCAGTAAAAAGGAGCTAAAATGAACCTCGTAATTGGTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTCCAGTAAAAAGGAGCTAAAATGAACCTCGTAATTGGTCTCC  800

seq1  GCTCAGACTGAACACACAAGACAGAGGCCATCTATCTATTAAGAGGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGACTGAACACACAAGACAGAGGCCATCTATCTATTAAGAGGGTTT  850

seq1  TCACACATGATGACGGGTCATACCTGACTACCCTAAGAGAAAT-GGAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCACACATGATGACGGGTCATACCTGACTACCCTAAGAGAAATGGGAAAA  900

seq1  CCAATTCTCAAAAAGTAATTAGGCACAATG-TTTTAGAGGAGGGAGAGAA  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCAATTCTCAAAAAGTAATTAGGCACAATGTTTTTAGAGGAGGGAGAGAA  950

seq1  ATTTGGGGATTTAGGTTATTTCCAGAGCCATTTTCAGTTTCTAATCGAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGATTTAGGTTATTTCCAGAGCCATTTTCAGTTTCTAATCGAAC  1000

seq1  ATGTGACAAGCTTGGAAGTCAT-CACTCCCATCAAGATGAGAGGGGAAAG  1047
      ||||||| ||||||  |||||| |||||||||||||||||||||||||||
seq2  ATGTGAC-AGCTTG--AGTCATCCACTCCCATCAAGATGAGAGGGGAAAG  1047

seq1  CCCAGCAAACTGAAAATCAAAAGCTCTTAGCCAGATGCAGTAGCACTTAC  1097
      ||||||||  |||||||| ||||||||||| |||||||||||||||||||
seq2  CCCAGCAACTTGAAAATC-AAAGCTCTTAG-CAGATGCAGTAGCACTTAC  1095

seq1  C-TGTAAGCCCAGTGCTAG-ACTGAGGGGGCAGG-ACAGCAAGA-CTGAG  1143
      | ||| || |||||||||| |||||||||||||| ||||  ||| |||| 
seq2  CTTGTTAG-CCAGTGCTAGAACTGAGGGGGCAGGAACAGGCAGACCTGAA  1144

seq1  ACAATCAGCAGCAACAGAGAGCCTC-CTG-TCTGGAG-GAACA  1183
      || ||||||||| ||||| |||||| ||| ||||||| |||||
seq2  AC-ATCAGCAGC-ACAGAAAGCCTCTCTGTTCTGGAGAGAACA  1185


| Home | SequenceCutter | Blast | Download |