BAC Information

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BAC

Clone NameB6Ng01-262O07
Chromosome14 (Build37)
Map Location 84,698,757 - 84,850,765
singlet/doubletdoublet
Overlap genePcdh17
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream gene9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262O07.bB6Ng01-262O07.g
ACCGA067194GA067195
length1,1611,115
definitionB6Ng01-262O07.b B6Ng01-262O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,698,757 - 84,699,928)(84,849,644 - 84,850,765)
sequence
gaattcattgacataactagataatttctggaagaaattgatataaaggt
aaaatctactgaataaataattggattgttctggaaattaatgaaaatga
ctaaatgacacatcatatgtttagttaacaacaaatagaatagatgcaga
aataaatattgtgatagtaaattttacataactgaaataaaatacttgag
gtaaacaacttaaagcaacaaagaaacagattactttgtttcataattct
attttagtccatggatacctctatccattgcatttagatatatcctgaga
caaagatagagtgtcattagaacatggcaggcgtgggaggattcttctac
tattgtcaggatatataaaggaaggccggacatgacaaaacccaccattt
cagtggatacctctattattgtacttctttcaattagtttttaccttttc
atcacccaatctgctagcagcactcagtggaataaaatactgataaaatg
tcagtactctcatgattcattcattctctcgaagctctatatttcctcat
tggaaatcaatccaacatcagaattcgggaaacaatatctagacaataat
atataacaaggcatcacatgagatgtgaaagacggatgtgaaaaattaag
gactggcaaagaggctcagcagttaagaacctttactattattgcagaat
attcctgagcatttcttttagtgttttacactagagtcttgttttccagg
tagagatcatctattttcctcttctgatctatgctatcctgtttgagcat
atgttacacataaacacacacaggaaacccacatgcacaaatatgaaaat
aatttgttttttaaggggaaaaagaaatctggaaaaaccaagaatatata
attgaccatatacaatgaatgtaattatttataatcttagaaataaatgt
aggagctgcttgttcctaatctcatattaaacaatgcagacagaaagaga
aaatgctgaagccacccaaagcttggaggaaaatttacaactctaattta
taaacccttgtaattccttacacaatctataaacattcccttattctgaa
agaatattgtagtctgactctccatctagaaacctgacagatagacacct
cacaaaaatcc

gaattcctgcagacttccttcattccacttgagcacaatatgcattactg
cccaattgttgagggaaaagagaagggggggaggcacatcaattggctaa
tttattatgatttttataataaatataagagaaatgtggtacatttccaa
agatattaatttattgaattctataacccatcttttaaaggactgaagga
agacagaggaaactgttagctgtttcagtggagaatttttaagacagcag
tagcatagggaattgagacactttggtcaaattacaaacttaatccaaag
tccattttgtactttggtggaatgggttacagtttttttttttttgacat
aaaagaatacaaagacagtcttttacatactacttaaactgttgaaattt
gtggtagtatgtgatttttcttggtttgggtttcactctttgtgaggacc
caccactatgatttacagccaataaccagcttcaatggcaatataattaa
catagtacaagcactacatccttccaattttttggatattttattcaaga
gtgctcttcacttgtctaagaagacacacttgctgacaattttactgcac
caatttgattttatagatttatttttctgctggaaactagataaaaattc
aactcacagcccttaaagtagatgattaagtattagccttttgtgacaac
tttgtcagtggcataaatatagaacaggtgtacaaaatatttgcaattcc
aaaatgactacatcacatctataaacaaacatttaatcattattccctct
atagagatattagtgtttataaataccagtttcacgcagttacaggaaga
catttttagaagccaagtttttatagttgagaatttctttatgtttcata
taaactttaagtccatgattacatgattactcatatacagtgaatattat
aaaatggcattttatacttgaatagtaaattacattgtacttggcagctt
tgctcacatgacactatgctgtcagagaaaatgtttttctgcttagtgta
ggcatgggagggatttatttagcagtcctatgggtcttcaacactccatc
tgaacaaagtaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84698757_84699928
seq2: B6Ng01-262O07.b_46_1206

seq1  GAATTCATTGACATAACTAGATAATTTCTGGAAGAAATTGATATAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGACATAACTAGATAATTTCTGGAAGAAATTGATATAAAGGT  50

seq1  AAAATCTACTGAATAAATAATTGGATTGTTCTGGAAATTAATGAAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTACTGAATAAATAATTGGATTGTTCTGGAAATTAATGAAAATGA  100

seq1  CTAAATGACACATCATATGTTTAGTTAACAACAAATAGAATAGATGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGACACATCATATGTTTAGTTAACAACAAATAGAATAGATGCAGA  150

seq1  AATAAATATTGTGATAGTAAATTTTACATAACTGAAATAAAATACTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATTGTGATAGTAAATTTTACATAACTGAAATAAAATACTTGAG  200

seq1  GTAAACAACTTAAAGCAACAAAGAAACAGATTACTTTGTTTCATAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAACTTAAAGCAACAAAGAAACAGATTACTTTGTTTCATAATTCT  250

seq1  ATTTTAGTCCATGGATACCTCTATCCATTGCATTTAGATATATCCTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTCCATGGATACCTCTATCCATTGCATTTAGATATATCCTGAGA  300

seq1  CAAAGATAGAGTGTCATTAGAACATGGCAGGCGTGGGAGGATTCTTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATAGAGTGTCATTAGAACATGGCAGGCGTGGGAGGATTCTTCTAC  350

seq1  TATTGTCAGGATATATAAAGGAAGGCCGGACATGACAAAACCCACCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCAGGATATATAAAGGAAGGCCGGACATGACAAAACCCACCATTT  400

seq1  CAGTGGATACCTCTATTATTGTACTTCTTTCAATTAGTTTTTACCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGATACCTCTATTATTGTACTTCTTTCAATTAGTTTTTACCTTTTC  450

seq1  ATCACCCAATCTGCTAGCAGCACTCAGTGGAATAAAATACTGATAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCAATCTGCTAGCAGCACTCAGTGGAATAAAATACTGATAAAATG  500

seq1  TCAGTACTCTCATGATTCATTCATTCTCTCGAAGCTCTATATTTCCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACTCTCATGATTCATTCATTCTCTCGAAGCTCTATATTTCCTCAT  550

seq1  TGGAAATCAATCCAACATCAGAATTCGGGAAACAATATCTAGACAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCAATCCAACATCAGAATTCGGGAAACAATATCTAGACAATAAT  600

seq1  ATATAACAAGGCATCACATGAGATGTGAAAGACGGATGTGAAAAATTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACAAGGCATCACATGAGATGTGAAAGACGGATGTGAAAAATTAAG  650

seq1  GACTGGCAAAGAGGCTCAGCAGTTAAGAACCTTTACTATTATTGCAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCAAAGAGGCTCAGCAGTTAAGAACCTTTACTATTATTGCAGAAT  700

seq1  ATTCCTGAGCATTTCTTTTAGTGTTTTACACTAGAGTCTTGTTTTCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGAGCATTTCTTTTAGTGTTTTACACTAGAGTCTTGTTTTCCAGG  750

seq1  TAGAGATCATCTATTTTCCTCTTCTGATCTATGCTATCCTGTTTGAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATCATCTATTTTCCTCTTCTGATCTATGCTATCCTGTTTGAGCAT  800

seq1  ATGTTACACATAAACACACACAGGAAACCCACATGCACAAATATGAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACACATAAACACACACAGGAAACCCACATGCACAAATATGAAAAT  850

seq1  AATTTGTTTTTTAAGGGGAAAAAGAAATCTGGAAAAACCAAGAATATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTTTTTAAGGGGAAAAAGAAATCTGGAAAAACCAAGAATATATA  900

seq1  ATTGACCATATACAATGAATGTAATTATTTATAATCTTAGAAATAAATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCATATACAATGAATGTAATTATTTATAATCTTAGAAATAAATGT  950

seq1  AGGAGCTGCTTGTTCCTAATCTCATATTAAACAATGCAGACAAGAAAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGAGCTGCTTGTTCCTAATCTCATATTAAACAATGCAGAC-AGAAAGAG  999

seq1  AAAATGCTGAAGCCACCCAAAGGCTTGGAGGAAAATTTACAACCTCTAAT  1050
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  AAAATGCTGAAGCCACCCAAA-GCTTGGAGGAAAATTTACAA-CTCTAAT  1047

seq1  TTATTAAACCCTTGTAAATTCCTTACAACAATCTATAAACATTTCCCCTT  1100
      ||| ||||||||||| |||||||||| ||||||||||||||||  |||||
seq2  TTA-TAAACCCTTGT-AATTCCTTAC-ACAATCTATAAACATT--CCCTT  1092

seq1  ATTCTGATAGATAATTGTAGTCTTGACCTCT-CATCTAGAAAACTTGACA  1149
      ||||||| |||  ||||||||| ||| |||| ||||||| |||| |||||
seq2  ATTCTGAAAGAATATTGTAGTC-TGA-CTCTCCATCTAG-AAACCTGACA  1139

seq1  GATAAGGACAACT-ACAAAAATCC  1172
      ||||  |||| || ||||||||||
seq2  GATA--GACACCTCACAAAAATCC  1161


seq1: chr14_84849644_84850765
seq2: B6Ng01-262O07.g_69_1183 (reverse)

seq1  AAGTTACTATTGCTCAGATGGAGTGTTGAAGACCCATAGACCTGCTAATA  50
      |||||||| ||| ||||||||||||||||||||||||||  ||||||| |
seq2  AAGTTACT-TTGTTCAGATGGAGTGTTGAAGACCCATAGGACTGCTAA-A  48

seq1  TAATCCCCTCCCATGCCCTAACACTAAGCAG-AAAACATTTTCTCTGACA  99
      |||  ||||||||||||   ||||||||||| ||||||||||||||||||
seq2  TAAATCCCTCCCATGCC--TACACTAAGCAGAAAAACATTTTCTCTGACA  96

seq1  GCATAGTGTCCATGTGAGCAAGGCTTGCCAAGTACAATGTAATTTACTAT  149
      ||||||||| ||||||||||| || |||||||||||||||||||||||||
seq2  GCATAGTGT-CATGTGAGCAAAGC-TGCCAAGTACAATGTAATTTACTAT  144

seq1  TCAAGTATAAAATGCCATTTTTATAATATTCACTGTATATGAGTAATCAT  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCAAGTATAAAATGCCA-TTTTATAATATTCACTGTATATGAGTAATCAT  193

seq1  GTAATCATGGACTTAAAGTTTATATGAAACATAAAAGAAATTCTCAACTA  249
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTAATCATGGACTTAAAGTTTATATGAAACAT-AAAGAAATTCTCAACTA  242

seq1  TAAAAACTTGGCTTCTAAAAATGTCTTCCTGTAACTGCGTGAAACTGGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTTGGCTTCTAAAAATGTCTTCCTGTAACTGCGTGAAACTGGTA  292

seq1  TTTATAAACACTAATATCTCTATAGAGGGAATAATGATTAAATGTTTGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACACTAATATCTCTATAGAGGGAATAATGATTAAATGTTTGTT  342

seq1  TATAGATGTGATGTAGTCATTTTGGAATTGCAAATATTTTGTACACCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATGTGATGTAGTCATTTTGGAATTGCAAATATTTTGTACACCTGT  392

seq1  TCTATATTTATGCCACTGACAAAGTTGTCACAAAAGGCTAATACTTAATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTTATGCCACTGACAAAGTTGTCACAAAAGGCTAATACTTAATC  442

seq1  ATCTACTTTAAGGGCTGTGAGTTGAATTTTTATCTAGTTTCCAGCAGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTTAAGGGCTGTGAGTTGAATTTTTATCTAGTTTCCAGCAGAAA  492

seq1  AATAAATCTATAAAATCAAATTGGTGCAGTAAAATTGTCAGCAAGTGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTATAAAATCAAATTGGTGCAGTAAAATTGTCAGCAAGTGTGT  542

seq1  CTTCTTAGACAAGTGAAGAGCACTCTTGAATAAAATATCCAAAAAATTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGACAAGTGAAGAGCACTCTTGAATAAAATATCCAAAAAATTGG  592

seq1  AAGGATGTAGTGCTTGTACTATGTTAATTATATTGCCATTGAAGCTGGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTAGTGCTTGTACTATGTTAATTATATTGCCATTGAAGCTGGTT  642

seq1  ATTGGCTGTAAATCATAGTGGTGGGTCCTCACAAAGAGTGAAACCCAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGTAAATCATAGTGGTGGGTCCTCACAAAGAGTGAAACCCAAAC  692

seq1  CAAGAAAAATCACATACTACCACAAATTTCAACAGTTTAAGTAGTATGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAATCACATACTACCACAAATTTCAACAGTTTAAGTAGTATGTA  742

seq1  AAAGACTGTCTTTGTATTCTTTTATGTCAAAAAAAAAAAAACTGTAACCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTCTTTGTATTCTTTTATGTCAAAAAAAAAAAAACTGTAACCC  792

seq1  ATTCCACCAAAGTACAAAATGGACTTTGGATTAAGTTTGTAATTTGACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACCAAAGTACAAAATGGACTTTGGATTAAGTTTGTAATTTGACCA  842

seq1  AAGTGTCTCAATTCCCTATGCTACTGCTGTCTTAAAAATTCTCCACTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTCAATTCCCTATGCTACTGCTGTCTTAAAAATTCTCCACTGAA  892

seq1  ACAGCTAACAGTTTCCTCTGTCTTCCTTCAGTCCTTTAAAAGATGGGTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAACAGTTTCCTCTGTCTTCCTTCAGTCCTTTAAAAGATGGGTTA  942

seq1  TAGAATTCAATAAATTAATATCTTTGGAAATGTACCACATTTCTCTTATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTCAATAAATTAATATCTTTGGAAATGTACCACATTTCTCTTATA  992

seq1  TTTATTATAAAAATCATAATAAATTAGCCAATTGATGTGCCTCCCCCCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATAAAAATCATAATAAATTAGCCAATTGATGTGCCTCCCCCCCT  1042

seq1  TCTCTTTTCCCTCAACAATTGGGCAGTAATGCATATTGTGCTCAAGTGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCCCTCAACAATTGGGCAGTAATGCATATTGTGCTCAAGTGGA  1092

seq1  ATGAAGGAAGTCTGCAGGAATTC  1122
      |||||||||||||||||||||||
seq2  ATGAAGGAAGTCTGCAGGAATTC  1115


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