BAC Information

Click to search

BAC

Clone NameB6Ng01-263A12
Chromosome14 (Build37)
Map Location 31,544,996 - 31,683,736
singlet/doubletdoublet
Overlap geneSfmbt1, Tmem110
Upstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1
Downstream geneMustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263A12.bB6Ng01-263A12.g
ACCGA067300GA067301
length1,0741,161
definitionB6Ng01-263A12.b B6Ng01-263A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,544,996 - 31,546,046)(31,682,558 - 31,683,736)
sequence
gaattcattatttttcttcttttaaaaaactctttcattgtatatgtttc
acttctctgggtaggtttatttctagatttaatttttttaaaagcttttg
tgactaggattgtttaatttttttctcagcaattttgttattagtgtata
caaaagccactgatacatcctgctactttactaaatgtgtttataagagt
gttgtagaagactttaggcccttctaagaataaaatcatatcgtctgcaa
aagcgataattcttgtcttcttttttatctttcacctggcttttggccaa
gattttaagcactgtactgaataatgagagttggccccttctttgtttta
gactagaaacagtttcagttttgtctgtttgtgttgactactgtaattgg
ctatagtctatattatggctcttcagtccttagtttctttggagttatca
taaaagggtgtgttgaactttgttaaacagctttctgcatctgttgtgat
gacgatgctaattttgcccttgttctgttatactactccatgtattttga
acagggagcaggcgcatgcacaaacacacacacacacacacacacacaca
cacacacacacacacaggatttattagaatggcttacaggctgtggtcca
gttagtccaataatggctgttttctcactagaaggacaagaatatggtgg
tagttcagtccaggaggctggatgtctcagctggtcttcagtatgtgttg
gaatccagaagaaaaaggttttagtatccttaaagactgctttagctgga
agatagacagattagctagttagagtgagggaaagcaggccaaagcaaaa
attttcttgtagtaagtccttttatgtaggctgccactaggaggtgtggc
ccaggtttgggtcaatcttctcacctcaatgcttgagttttagttgattc
cagatgtagtcagttgacagccagattagcctgtttgcttttgagaatat
ttgagagcagtatgtatttatcctttattaccacttcagtattactactc
aatatgatctgaataggttctttt
gaattcctaatttggacataccagaatgtttttcttaggaaaaaaaaaat
tctaggatagagttaaggggaactaaacttagcgctcactgctggctctg
tccactggcagcagcagctgggttaagcaagagtgctattttatctgcag
ttgatttttccagcgactgctgctaacccccttttctccgacgctgtgcc
tataactgcagtaatcaacttctttgtccatttcctccttccggccgccc
catcccccaatctccctgcggttcttagccctgggtacatcagactgatc
cagagagcctcagagtccacaaactcacgcaaaagaaccacaagttaatg
gttcccagggctttttcatagaattaaccaaacacaaatttgggagcaac
ctaattcattttggggggccatgtaacaccttggctaggagaaagagatc
gaagcctttaagacaggatgtggcagatacggcctgaggccagcggctac
agcacaggctgtcagtgggtatggttaagaagtgctcaggagggctccaa
cagtccaaaatggggaccacctggaccctgcagtgcctctagggtacgtc
agaaacagactcattgaagggtgggaccagcctctctagagaatgatcga
atgacacgcagaatcttaggccaggcctccacagagtgggagagggtggc
agggccttgtcctgaaagctcagccagggtgacctgcactccacggacca
gaacagcaacaaagtgacatttcaggaaggccgtgagaagaggacctggt
ccggagagacatctccaggcacccatgctgtaggcggcatccctgtctgg
ggccgcaggccgaacacagtggaggcaggtgaatgcctttccacagctgt
aatggaccaccagcagaacacgcccctttcctcttctggaacaatggcag
gagaaggcggcaagcatgcagcagcacactgagtgcctaacctaaggcct
gaccctttgctccacttcaaggcaggcatgtaagcctcagcggagcacct
gagtcactcttcttgccaagctagcaggacttccaatgctttgtaaccac
tgatctactgaaaacgagaggactgctgctcactccaggctagaacagtg
aattcccatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_31544996_31546046
seq2: B6Ng01-263A12.b_79_1120

seq1  TTTCATTGTATATGTTTCACTTCTCTGGGTAGGTTTATTTCTAGATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTATATGTTTCACTTCTCTGGGTAGGTTTATTTCTAGATTTAA  50

seq1  TTTTTTTAAAAGCTTTTGTGACTAGGATTGTTTAATTTTTTTCTCAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAAGCTTTTGTGACTAGGATTGTTTAATTTTTTTCTCAGCAA  100

seq1  TTTTGTTATTAGTGTATACAAAAGCCACTGATACATCCTGCTACTTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTATTAGTGTATACAAAAGCCACTGATACATCCTGCTACTTTACT  150

seq1  AAATGTGTTTATAAGAGTGTTGTAGAAGACTTTAGGCCCTTCTAAGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTTTATAAGAGTGTTGTAGAAGACTTTAGGCCCTTCTAAGAATA  200

seq1  AAATCATATCGTCTGCAAAAGCGATAATTCTTGTCTTCTTTTTTATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATATCGTCTGCAAAAGCGATAATTCTTGTCTTCTTTTTTATCTTT  250

seq1  CACCTGGCTTTTGGCCAAGATTTTAAGCACTGTACTGAATAATGAGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCTTTTGGCCAAGATTTTAAGCACTGTACTGAATAATGAGAGTT  300

seq1  GGCCCCTTCTTTGTTTTAGACTAGAAACAGTTTCAGTTTTGTCTGTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTTCTTTGTTTTAGACTAGAAACAGTTTCAGTTTTGTCTGTTTGT  350

seq1  GTTGACTACTGTAATTGGCTATAGTCTATATTATGGCTCTTCAGTCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTACTGTAATTGGCTATAGTCTATATTATGGCTCTTCAGTCCTTA  400

seq1  GTTTCTTTGGAGTTATCATAAAAGGGTGTGTTGAACTTTGTTAAACAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGGAGTTATCATAAAAGGGTGTGTTGAACTTTGTTAAACAGCT  450

seq1  TTCTGCATCTGTTGTGATGACGATGCTAATTTTGCCCTTGTTCTGTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATCTGTTGTGATGACGATGCTAATTTTGCCCTTGTTCTGTTATA  500

seq1  CTACTCCATGTATTTTGAACAGGGAGCAGGCGCATGCACAAACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCATGTATTTTGAACAGGGAGCAGGCGCATGCACAAACACACACA  550

seq1  CACACACACACACACACACACACACACACACACAGGATTTATTAGAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAGGATTTATTAGAATGG  600

seq1  CTTACAGGCTGTGGTCCAGTTAGTCCAATAATGGCTGTTTTCTCACTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGGCTGTGGTCCAGTTAGTCCAATAATGGCTGTTTTCTCACTAGA  650

seq1  AGGACAAGAATATGGTGGTAGTTCAGTCCAGGAGGCTGGATGTCTCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGAATATGGTGGTAGTTCAGTCCAGGAGGCTGGATGTCTCAGCT  700

seq1  GGTCTTCAGTATGTGTTGGAATCCAGAAGAAAAAGGTTTTAGTATCCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCAGTATGTGTTGGAATCCAGAAGAAAAAGGTTTTAGTATCCTTA  750

seq1  AAGACTGCTTTAGCTGGAAGATAGACAGATTAGCTAGTTAGAGTGAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCTTTAGCTGGAAGATAGACAGATTAGCTAGTTAGAGTGAGGGA  800

seq1  AAGCAGGCCAAAGCAAAAATTTTCTTGTAGTAAGTCCTTTTATGTAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCCAAAGCAAAAATTTTCTTGTAGTAAGTCCTTTTATGTAGGCT  850

seq1  GCCACTAGAAGGTGTGGCCCAGGTTTGGGTCAATCTTCTCACCTCAAATG  900
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  GCCACTAGGAGGTGTGGCCCAGGTTTGGGTCAATCTTCTCACCTC-AATG  899

seq1  CTTGAGTTTTAGTTGATTCCAGATGTAGTCAAGTTGACAGCCAAGATTAG  950
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  CTTGAGTTTTAGTTGATTCCAGATGTAGTC-AGTTGACAGCC-AGATTAG  947

seq1  CCTGTTTGCTTTTGAGAATAATTTGAGGAGCAGTAATGTTATTTTATCCT  1000
      ||||||||||||||||||| |||||| ||||||| ||||   ||||||||
seq2  CCTGTTTGCTTTTGAGAAT-ATTTGA-GAGCAGT-ATGT--ATTTATCCT  992

seq1  TTATTACCACTTCAGTATTACTACTCATTATAGATCTGATTAGGTTTTTT  1050
      ||||||||||||||||||||||||||| ||| ||||||| |||||| |||
seq2  TTATTACCACTTCAGTATTACTACTCAATAT-GATCTGAATAGGTTCTTT  1041

seq1  T  1051
      |
seq2  T  1042

seq1: chr14_31682558_31683736
seq2: B6Ng01-263A12.g_70_1230 (reverse)

seq1  AGATGGGGA-TCACTGTTCTTGCCTGGGAGTTGAGCAAGCAGTTTCCTCT  49
      ||||||| | |||||||||| |||| |||| ||||| |||||  ||||||
seq2  AGATGGGAATTCACTGTTCTAGCCT-GGAG-TGAGC-AGCAG--TCCTCT  45

seq1  CCTGTTCTCAGTAAGATCAGGTGGTTTACCAAAAGCATTGGGAAACTCCT  99
      |  ||| ||||| |||||| |||| ||||  ||||||||||  || ||||
seq2  C--GTTTTCAGT-AGATCA-GTGG-TTAC--AAAGCATTGG--AAGTCCT  86

seq1  GCTAGGCCTTGCCAGGAAGAGTGACTTCCAGGTGCTCCGCTGAGGCTTAC  149
      |||||  |||| || |||||||||||  ||||||||||||||||||||||
seq2  GCTAG--CTTGGCAAGAAGAGTGACT--CAGGTGCTCCGCTGAGGCTTAC  132

seq1  ATGCCCTGCCCTGGAGGTGGAGCAAAGGGTCAGGCCTTAGGTTAGGCACT  199
      ||| |||| ||| || ||||||||||||||||||||||||||||||||||
seq2  ATG-CCTG-CCTTGAAGTGGAGCAAAGGGTCAGGCCTTAGGTTAGGCACT  180

seq1  CAGTGTGCTGCTGCATGCTTGCCGCCCTTCTCCTGCCATTG-TCCAGAAG  248
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  CAGTGTGCTGCTGCATGCTTGCCG-CCTTCTCCTGCCATTGTTCCAGAAG  229

seq1  AGG-AAGGGGCGTGTTCTGCTGGTGGTCCATTACAGCTGTGGAAAGGCAT  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGGCGTGTTCTGCTGGTGGTCCATTACAGCTGTGGAAAGGCAT  279

seq1  TCACCTGCCTCCACTGTGTTCGGCCTGCGGCCCCAGACAGGGATGCCGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCCTCCACTGTGTTCGGCCTGCGGCCCCAGACAGGGATGCCGCC  329

seq1  TACAGCATGGGTGCCTGGAGATGTCTCTCCGGACCAGGTCCTCTTCTCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCATGGGTGCCTGGAGATGTCTCTCCGGACCAGGTCCTCTTCTCAC  379

seq1  GGCCTTCCTGAAATGTCACTTTGTTGCTGTTCTGGTCCGTGGAGTGCAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCCTGAAATGTCACTTTGTTGCTGTTCTGGTCCGTGGAGTGCAGG  429

seq1  TCACCCTGGCTGAGCTTTCAGGACAAGGCCCTGCCACCCTCTCCCACTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGGCTGAGCTTTCAGGACAAGGCCCTGCCACCCTCTCCCACTCT  479

seq1  GTGGAGGCCTGGCCTAAGATTCTGCGTGTCATTCGATCATTCTCTAGAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGCCTGGCCTAAGATTCTGCGTGTCATTCGATCATTCTCTAGAGA  529

seq1  GGCTGGTCCCACCCTTCAATGAGTCTGTTTCTGACGTACCCTAGAGGCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTCCCACCCTTCAATGAGTCTGTTTCTGACGTACCCTAGAGGCAC  579

seq1  TGCAGGGTCCAGGTGGTCCCCATTTTGGACTGTTGGAGCCCTCCTGAGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGTCCAGGTGGTCCCCATTTTGGACTGTTGGAGCCCTCCTGAGCA  629

seq1  CTTCTTAACCATACCCACTGACAGCCTGTGCTGTAGCCGCTGGCCTCAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAACCATACCCACTGACAGCCTGTGCTGTAGCCGCTGGCCTCAGG  679

seq1  CCGTATCTGCCACATCCTGTCTTAAAGGCTTCGATCTCTTTCTCCTAGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATCTGCCACATCCTGTCTTAAAGGCTTCGATCTCTTTCTCCTAGCC  729

seq1  AAGGTGTTACATGGCCCCCCAAAATGAATTAGGTTGCTCCCAAATTTGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTACATGGCCCCCCAAAATGAATTAGGTTGCTCCCAAATTTGTG  779

seq1  TTTGGTTAATTCTATGAAAAAGCCCTGGGAACCATTAACTTGTGGTTCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTAATTCTATGAAAAAGCCCTGGGAACCATTAACTTGTGGTTCTT  829

seq1  TTGCGTGAGTTTGTGGACTCTGAGGCTCTCTGGATCAGTCTGATGTACCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTGAGTTTGTGGACTCTGAGGCTCTCTGGATCAGTCTGATGTACCC  879

seq1  AGGGCTAAGAACCGCAGGGAGATTGGGGGATGGGGCGGCCGGAAGGAGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAAGAACCGCAGGGAGATTGGGGGATGGGGCGGCCGGAAGGAGGA  929

seq1  AATGGACAAAGAAGTTGATTACTGCAGTTATAGGCACAGCGTCGGAGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAAAGAAGTTGATTACTGCAGTTATAGGCACAGCGTCGGAGAAA  979

seq1  AGGGGGTTAGCAGCAGTCGCTGGAAAAATCAACTGCAGATAAAATAGCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTTAGCAGCAGTCGCTGGAAAAATCAACTGCAGATAAAATAGCAC  1029

seq1  TCTTGCTTAACCCAGCTGCTGCTGCCAGTGGACAGAGCCAGCAGTGAGCG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTAACCCAGCTGCTGCTGCCAGTGGACAGAGCCAGCAGTGAGCG  1079

seq1  CTAAGTTTAGTTCCCCTTAACTCTATCCTAGAATTTTTTTTTTCCTAAGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTTAGTTCCCCTTAACTCTATCCTAGAATTTTTTTTTTCCTAAGA  1129

seq1  AAAACATTCTGGTATGTCCAAATTAGGAATTC  1179
      ||||||||||||||||||||||||||||||||
seq2  AAAACATTCTGGTATGTCCAAATTAGGAATTC  1161