BAC Information

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BAC

Clone NameB6Ng01-263P03
Chromosome14 (Build37)
Map Location 77,692,721 - 77,811,068
singlet/doubletdoublet
Overlap geneD230005D02Rik, LOC676171
Upstream geneTsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, LOC100043755
Downstream geneEG629678, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263P03.bB6Ng01-263P03.g
ACCGA067980GA067981
length1,1641,079
definitionB6Ng01-263P03.b B6Ng01-263P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,809,896 - 77,811,068)(77,692,721 - 77,693,815)
sequence
gaattcaaaagagatcttttgtgctttcaaaatatgtgatattgcacaga
cactcgaaatacagcatgtactaagcagaccaaagaaggaatgtcccagc
tactcactttccctccaacgaaggaagaagagaaggggaaaccgccattt
attagatgccttatttgatttctgtaacaatcttggcacttgggttttct
catttcaaggaagagcagtagcttgccctaggccatgatgacagagtgag
acccaaccctgactcaggcacttgcacccttgttaggagtacactaagag
tcaaacatgtggctgtggtgaacaaaggcacaggagagactccggaggga
ttgcagcatctacaggggctgctgcatcccatggcctcctccactgtacc
accaagcagcaagaactgcagagggagcacctctgccctttagacaagtc
agggtccttgtccctgggtctaaagaagccaaggtatcaatgagtaagaa
tggcagctattaacagacctttctatcttccagatgctaagttctcacat
caaatactttgctgtagggcaagacagctctctagatgtgagtatctgga
gtcaccctgggctggcagatggagtgacaaggacctccgtcagaagattt
acccactcatcctctcatcctctcacccacccactgtgcggacaccatcg
ggctgattcagatatgagtggatttccgttctcaaagcatcactccaaac
cccactcctacgtatggtcaaatgtgaagtatgcttggccaataatagcc
ttagtccaataatagtccagaggaagaggacccagccgctcaggaactag
gatccttcccgtgctgcttcgtgcctaccaccccgcccatgtaaagacct
gggtggtgatgcttcagtgttcctcaaacttagctgaagggaggaaaggg
caagtaggagggggagctcacagaaatacgttatagtagtgatgtttaga
cactttattggaacacaaatttcattttcatagagattgatactagagtc
acagccacgtttccaaaggggccagaagagcattcttggatccacatcta
ctgtgtcaattgcaaagtaccttggctctggcttagccagagatactcct
tgtcagaaatggcc

gaattcagcttaataatttgggattaggatccaatcaaacttgtttaaac
aaaaaccagtttctatagcactcagaacttccaaagaattggcaattaaa
tgtcattttaatggaaagttatttccatggaatgtgtgaagggcacgtta
ttgtctctcatcatatgagagcaaatgtaaacaagagttctgtgctctga
caatggaggatactgattggtgttatgtgaagatttttgtttatgaaaac
gtaacctttcctttgatttccatggtaatgttccaagaaaacccttaata
gaaaaattattatttggtgtgcaaattcctttacatttgattcttcaatt
aagtcttgaaatgaactgcctttttaaatagtcaccattaaaaagaaaag
gccatttctgactacacggtgaggagactgtaataaactggtcccaaatg
aattgaataatccataagacagttaagctcagagtttattttttgggctg
aaactcatacaaaagtttgaggacccatattccatcaggagctggtttgg
ttctgtgaacatggctttacgtgcagctgggtttatattgaacagcagct
ctcccaattcttagtgcagcaaacgattcagctgaaatatctgaatatca
gctttctcatctataaattgtagataatgattactacatcatggagtagt
tgtgcatccggcatgaaataagttatttgaggctgatgtattcctttaat
aatgtaaaaagaatattgaattcagttcaggaccattataagattttttt
gattactttcagcttgggtgaagctttaattcttagttaaattccttttc
taaagcactcatttattgtctattatttttctagttatctaggtgcattg
gggaattaaaatcatcatttaaaaatcatcccatggctatcaaaagctca
tcaattgtagatgctaatgggaaagtcaagaatctgctcactattactgt
agcgtgcacagagctatctgggaaagcaggctgctttgaattcccacagt
aaatgcttgcagattaaattgtcactcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_77809896_77811068
seq2: B6Ng01-263P03.b_43_1206 (reverse)

seq1  GGCCTATTTCTAGAAACAAGGAGTATCTCATGCTAGGCAAGAGCCAAGTT  50
      |||| ||||||    ||||||||||||||  |||| || ||||||||| |
seq2  GGCC-ATTTCT---GACAAGGAGTATCTCTGGCTAAGCCAGAGCCAAGGT  46

seq1  CCTTTTGCATTTTGACACAGTAGGATTGTGGATCCAAGGATGCTCTTCTG  100
       | ||||||  ||||||||||||   |||||||||||| |||||||||||
seq2  AC-TTTGCA-ATTGACACAGTAG--ATGTGGATCCAAGAATGCTCTTCTG  92

seq1  GCCCCTTTTGGAAACCGTGGCTGTGACCTCTAGTATCCATCTCTATGAAA  150
      ||||| |||||||| ||||||||||| |||||||||| ||||||||||||
seq2  GCCCC-TTTGGAAA-CGTGGCTGTGA-CTCTAGTATCAATCTCTATGAAA  139

seq1  ATGAAATTTGTGTTCCCAATAAAGTGTCTAAACATCACTACTAT-ACGTA  199
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  ATGAAATTTGTGTT-CCAATAAAGTGTCTAAACATCACTACTATAACGTA  188

seq1  TTTCTGTGAGCT-CCCCTCCTACTTGCCC-TTCCTCCCTTCAGCTAAGTT  247
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  TTTCTGTGAGCTCCCCCTCCTACTTGCCCTTTCCTCCCTTCAGCTAAGTT  238

seq1  TGAGGAACACTGAAGCATCACCACCCAGGTCTTTACATGGGCGGGGTGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACACTGAAGCATCACCACCCAGGTCTTTACATGGGCGGGGTGGT  288

seq1  AGGCACGAAGCAGCACGGGAAGGATCCTAGTTCCTGAGCGGCTGGGTCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACGAAGCAGCACGGGAAGGATCCTAGTTCCTGAGCGGCTGGGTCCT  338

seq1  CTTCCTCTGGACTATTATTGGACTAAGGCTATTATTGGCCAAGCATACTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGGACTATTATTGGACTAAGGCTATTATTGGCCAAGCATACTT  388

seq1  CACATTTGACCATACGTAGGAGTGGGGTTTGGAGTGATGCTTTGAGAACG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGACCATACGTAGGAGTGGGGTTTGGAGTGATGCTTTGAGAACG  438

seq1  GAAATCCACTCATATCTGAATCAGCCCGATGGTGTCCGCACAGTGGGTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCACTCATATCTGAATCAGCCCGATGGTGTCCGCACAGTGGGTGG  488

seq1  GTGAGAGGATGAGAGGATGAGTGGGTAAATCTTCTGACGGAGGTCCTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGATGAGAGGATGAGTGGGTAAATCTTCTGACGGAGGTCCTTGT  538

seq1  CACTCCATCTGCCAGCCCAGGGTGACTCCAGATACTCACATCTAGAGAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATCTGCCAGCCCAGGGTGACTCCAGATACTCACATCTAGAGAGC  588

seq1  TGTCTTGCCCTACAGCAAAGTATTTGATGTGAGAACTTAGCATCTGGAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGCCCTACAGCAAAGTATTTGATGTGAGAACTTAGCATCTGGAAG  638

seq1  ATAGAAAGGTCTGTTAATAGCTGCCATTCTTACTCATTGATACCTTGGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGGTCTGTTAATAGCTGCCATTCTTACTCATTGATACCTTGGCT  688

seq1  TCTTTAGACCCAGGGACAAGGACCCTGACTTGTCTAAAGGGCAGAGGTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGACCCAGGGACAAGGACCCTGACTTGTCTAAAGGGCAGAGGTGC  738

seq1  TCCCTCTGCAGTTCTTGCTGCTTGGTGGTACAGTGGAGGAGGCCATGGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGCAGTTCTTGCTGCTTGGTGGTACAGTGGAGGAGGCCATGGGA  788

seq1  TGCAGCAGCCCCTGTAGATGCTGCAATCCCTCCGGAGTCTCTCCTGTGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGCCCCTGTAGATGCTGCAATCCCTCCGGAGTCTCTCCTGTGCC  838

seq1  TTTGTTCACCACAGCCACATGTTTGACTCTTAGTGTACTCCTAACAAGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCACCACAGCCACATGTTTGACTCTTAGTGTACTCCTAACAAGGG  888

seq1  TGCAAGTGCCTGAGTCAGGGTTGGGTCTCACTCTGTCATCATGGCCTAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTGCCTGAGTCAGGGTTGGGTCTCACTCTGTCATCATGGCCTAGG  938

seq1  GCAAGCTACTGCTCTTCCTTGAAATGAGAAAACCCAAGTGCCAAGATTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTACTGCTCTTCCTTGAAATGAGAAAACCCAAGTGCCAAGATTGT  988

seq1  TACAGAAATCAAATAAGGCATCTAATAAATGGCGGTTTCCCCTTCTCTTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAATCAAATAAGGCATCTAATAAATGGCGGTTTCCCCTTCTCTTC  1038

seq1  TTCCTTCGTTGGAGGGAAAGTGAGTAGCTGGGACATTCCTTCTTTGGTCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCGTTGGAGGGAAAGTGAGTAGCTGGGACATTCCTTCTTTGGTCT  1088

seq1  GCTTAGTACATGCTGTATTTCGAGTGTCTGTGCAATATCACATATTTTGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTACATGCTGTATTTCGAGTGTCTGTGCAATATCACATATTTTGA  1138

seq1  AAGCACAAAAGATCTCTTTTGAATTC  1173
      ||||||||||||||||||||||||||
seq2  AAGCACAAAAGATCTCTTTTGAATTC  1164


seq1: chr14_77692721_77693815
seq2: B6Ng01-263P03.g_67_1145

seq1  GAATTCAGCTTAATAATTTGGGATTAGGATCCAATCAAACTTGTTTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTAATAATTTGGGATTAGGATCCAATCAAACTTGTTTAAAC  50

seq1  AAAAACCAGTTTCTATAGCACTCAGAACTTCCAAAGAATTGGCAATTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAGTTTCTATAGCACTCAGAACTTCCAAAGAATTGGCAATTAAA  100

seq1  TGTCATTTTAATGGAAAGTTATTTCCATGGAATGTGTGAAGGGCACGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTTAATGGAAAGTTATTTCCATGGAATGTGTGAAGGGCACGTTA  150

seq1  TTGTCTCTCATCATATGAGAGCAAATGTAAACAAGAGTTCTGTGCTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTCATCATATGAGAGCAAATGTAAACAAGAGTTCTGTGCTCTGA  200

seq1  CAATGGAGGATACTGATTGGTGTTATGTGAAGATTTTTGTTTATGAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGGATACTGATTGGTGTTATGTGAAGATTTTTGTTTATGAAAAC  250

seq1  GTAACCTTTCCTTTGATTTCCATGGTAATGTTCCAAGAAAACCCTTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTTTCCTTTGATTTCCATGGTAATGTTCCAAGAAAACCCTTAATA  300

seq1  GAAAAATTATTATTTGGTGTGCAAATTCCTTTACATTTGATTCTTCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTATTATTTGGTGTGCAAATTCCTTTACATTTGATTCTTCAATT  350

seq1  AAGTCTTGAAATGAACTGCCTTTTTAAATAGTCACCATTAAAAAGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGAAATGAACTGCCTTTTTAAATAGTCACCATTAAAAAGAAAAG  400

seq1  GCCATTTCTGACTACACGGTGAGGAGACTGTAATAAACTGGTCCCAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCTGACTACACGGTGAGGAGACTGTAATAAACTGGTCCCAAATG  450

seq1  AATTGAATAATCCATAAGACAGTTAAGCTCAGAGTTTATTTTTTGGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATAATCCATAAGACAGTTAAGCTCAGAGTTTATTTTTTGGGCTG  500

seq1  AAACTCATACAAAAGTTTGAGGACCCATATTCCATCAGGAGCTGGTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATACAAAAGTTTGAGGACCCATATTCCATCAGGAGCTGGTTTGG  550

seq1  TTCTGTGAACATGGCTTTACGTGCAGCTGGGTTTATATTGAACAGCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAACATGGCTTTACGTGCAGCTGGGTTTATATTGAACAGCAGCT  600

seq1  CTCCCAATTCTTAGTGCAGCAAACGATTCAGCTGAAATATCTGAATATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAATTCTTAGTGCAGCAAACGATTCAGCTGAAATATCTGAATATCA  650

seq1  GCTTTCTCATCTATAAATTGTAGATAATGATTACTACATCATGGAGTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCATCTATAAATTGTAGATAATGATTACTACATCATGGAGTAGT  700

seq1  TGTGCATCCGGCATGAAATAAGTTATTTGAGGCTGATGTATTCCTTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATCCGGCATGAAATAAGTTATTTGAGGCTGATGTATTCCTTTAAT  750

seq1  AATGTAAAAAGAATATTGAATTCAGTTCAGGACCATTATAAGATTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAAAGAATATTGAATTCAGTTCAGGACCATTATAAGATTTTTTT  800

seq1  GATTACTTTCAGCTTGGGTGAAGCTTTAAATTCTTAGTTAAATTCCTTTT  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GATTACTTTCAGCTTGGGTGAAGCTTT-AATTCTTAGTTAAATTCCTTTT  849

seq1  CTAAAGCACTCATTTATTGTCTATTATTTTTCTAGTTATCTAGGTGCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCACTCATTTATTGTCTATTATTTTTCTAGTTATCTAGGTGCATT  899

seq1  GGGGAATTAAAATCATCATTTAAAAATCATCCCATGGCTATCAAAAGCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATTAAAATCATCATTTAAAAATCATCCCATGGCTATCAAAAGCTC  949

seq1  ATCAATTGTTAGATGCTAATGGGAAAGTCAAGAATCTGCTCCAACTTATT  1000
      |||||||| ||||||||||||||||||||||||||||||||  || ||||
seq2  ATCAATTG-TAGATGCTAATGGGAAAGTCAAGAATCTGCTC--AC-TATT  995

seq1  ACTGTAGGCGTGCACAGAGCTATCTGGGGAAAAGCAAGGGCTGCTTTGAA  1050
      |||||| |||||||||||||||||||||  ||||||  ||||||||||||
seq2  ACTGTA-GCGTGCACAGAGCTATCTGGG--AAAGCA--GGCTGCTTTGAA  1040

seq1  TTCCCACAGTAAAATGCTTTGCAGAATTTAAAATATGTCACTCAT  1095
      |||||||||| |||||| |||||||  |||||   ||||||||||
seq2  TTCCCACAGT-AAATGC-TTGCAGA--TTAAA--TTGTCACTCAT  1079


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