BAC Information

Click to search

BAC

Clone NameB6Ng01-264C16
Chromosome14 (Build37)
Map Location 19,993,645 - 19,994,780
singlet/doubletsinglet
Overlap geneLOC667344
Upstream geneNr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341
Downstream geneLOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264C16.bB6Ng01-264C16.g
ACCGA068141GA068142
length1,2051,130
definitionB6Ng01-264C16.b B6Ng01-264C16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttaagctctgagccccattattttaatggggttatttgat
tttctggagtctactttcttgagttctttatatatattggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggcc
tttttatcttattgacggtgtcttttgccttacagaagctttgcagtttt
atgaggtcccatttgtcaattcttgatcttacagcacaagcaattgttgt
tctattcaggaattttttcccctgtgcccatatattcgaggcttttcccc
actttctcctctataagtttcagtgtctctggttttatggggagttcctt
gatccacttagatttgaccttagtacaaggaaataggaatggatcaattc
gcattcttctacatgataaccaccagttgtgccagcaccatttgttgaaa
atactgtcttttttccactggatggttttagctcccttgtcaaagatcaa
gtgaccataggtgtgtgggttcatttctgggtcttcaattctattccatt
gttctacttgtctgttgctataccagtaccattcagttttaaatcacaat
tgctctgtagtacagctttggatcagacatgctgattccaccataggttc
ttttatccttaagaagagtttttgctatcctaggttttttgttattccag
acgaatttgcagattgctctttctaattcgttgaagaattgagttggaat
tttgatggggattgcattgaatctgtagatggcttttggcaagatagcca
tttttacaatgttgatcctgccaatccatgagcatgggagatctttccat
cttctgagatcgtctttactttctttattcagagacttgaagttcttatc
atacagatcttttcacttacttagttagagtcacaccaagggtattttat
attatttgtgactattgagaagggtgttgtatccttaattttcttttctc
agcgtgttttattttttgtgtagagaaaggccatttgaacttgtttgagt
ttattatatccagctactttcattggagcttgcttaatcagttaggagtt
ctctggtggaattttaggttcacttacatatacctaatcaatcatctgca
acgtgatatttgaacttcttctttccaattttgtaatcccgtaggatatc
tacct
gaattctaaatcctggataagtaacactgcagtggcagaccttacacata
atcctggagatgagaccagccagcaccacagctttataatcttcccaagg
tatacaaatgtatggacaattgtgaccacataggcaaagaacagtgttga
attatgtgggggctccaagaccttagcactaacatcatcttgaaactctt
atacaggtaaatcctcaggccaaaacacagacccctagattccaaagtgt
ggatgggaacataaacatgtaaaacataagcacatgcatgtgcacgtggg
cacagagacacacaagaaagagaaaaagaaacagtgccagagaatgagaa
agagagacagagtcagaaacagagagagcacaatgagatgtagaagaaat
gcatgcaacattaatgtggcagagtataaggcacacagacaaagaggaac
aggcatgagcctcaggccttctagtcaagcactgagaagaacaatgtggg
accagacacctccagctgctaccaggagcttccagcacccaatcacctgc
caggcaagtacaaacattcaccgtaaactcacatcacctagaacctcaca
aaaccacattctgtcaagggtttttcaagtgcatgctgggaatttactcc
ccactgcctctatccctgagttatttagtcagaccccaagttcagctttt
caattggagtgaaccgaagactccacttcccatctcactcctgacaaaac
ttcaggttctacctctcctctaagaagcatttacagatatgaggttgaac
acagggacattgtggaggtacagcttcctagatcccactaccttaaaagg
atgagggtgacactgtagaccccagactgacaccacagggtttggagcaa
tgcataccttcttgttcatggatcctctgtgagggaggtcaaggcaatct
ctcagtttgtttctctcctgagtaatgagctacagctctgtggtcagctc
tctcttccttctggctggcttttgctagacagttgcaggaaatgatgtct
gttcttgcagctctgtaggtaagagaacacaagtgacgtacctgttgaga
atgccatagaggtagacgaacaatcctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_19993645_19994780
seq2: B6Ng01-264C16.g_66_1195 (reverse)

seq1  CTCAGG-GTGTTCTGTCTACACTCTAT-GCATTCTCACCAAGTACGTTCA  48
      ||||||  ||||| |||||| |||||| ||||||||| || ||||| |||
seq2  CTCAGGATTGTTC-GTCTAC-CTCTATGGCATTCTCAACAGGTACG-TCA  47

seq1  CTTGTGTTCTTCTACCTACAGAGGCTGGCAG-ACAGACATCATTTCCTGC  97
      ||||||||||  |||||||||| ||||  || ||||||||||||||||||
seq2  CTTGTGTTCTCTTACCTACAGA-GCTGCAAGAACAGACATCATTTCCTGC  96

seq1  AACTGTCCTAAGCAAAAAGCCAGCCCAGAAGGAAGAGGAGAGGCTGACCA  147
      |||||||   ||| ||||||||| |||||||||||| |||| ||||||||
seq2  AACTGTC--TAGC-AAAAGCCAG-CCAGAAGGAAGA-GAGA-GCTGACCA  140

seq1  CAGAGCTGTAGCTCATTACTCAGGAGAGAAACAAACTGAGAGATTGCC-T  196
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGAGCTGTAGCTCATTACTCAGGAGAGAAACAAACTGAGAGATTGCCTT  190

seq1  GACCTCCCTCACAGAGGGATCCATGAACAAG-AGGTATGCATTGCTCCAA  245
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  GACCTCCCTCACAGA-GGATCCATGAACAAGAAGGTATGCATTGCTCCAA  239

seq1  ACCCTGTGGTGTCAGTCTGGGGTCTACAGTGTCACCCTCATCCTTTTAAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGGTGTCAGTCTGGGGTCTACAGTGTCACCCTCATCCTTTTAAG  289

seq1  GTAGTGGGATCTAGGAAGCTGTACCTCCACAATGTCCCTGTGTTCAACCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGGATCTAGGAAGCTGTACCTCCACAATGTCCCTGTGTTCAACCT  339

seq1  CATATCTGTAAATGCTTCTTAGAGGAGAGGTAGAACCTGAAGTTTTGTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGTAAATGCTTCTTAGAGGAGAGGTAGAACCTGAAGTTTTGTCA  389

seq1  GGAGTGAGATGGGAAGTGGAGTCTTCGGTTCACTCCAATTGAAAAGCTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGATGGGAAGTGGAGTCTTCGGTTCACTCCAATTGAAAAGCTGA  439

seq1  ACTTGGGGTCTGACTAAATAACTCAGGGATAGAGGCAGTGGGGAGTAAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGGTCTGACTAAATAACTCAGGGATAGAGGCAGTGGGGAGTAAAT  489

seq1  TCCCAGCATGCACTTGAAAAACCCTTGACAGAATGTGGTTTTGTGAGGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCATGCACTTGAAAAACCCTTGACAGAATGTGGTTTTGTGAGGTT  539

seq1  CTAGGTGATGTGAGTTTACGGTGAATGTTTGTACTTGCCTGGCAGGTGAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGATGTGAGTTTACGGTGAATGTTTGTACTTGCCTGGCAGGTGAT  589

seq1  TGGGTGCTGGAAGCTCCTGGTAGCAGCTGGAGGTGTCTGGTCCCACATTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTGGAAGCTCCTGGTAGCAGCTGGAGGTGTCTGGTCCCACATTG  639

seq1  TTCTTCTCAGTGCTTGACTAGAAGGCCTGAGGCTCATGCCTGTTCCTCTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCAGTGCTTGACTAGAAGGCCTGAGGCTCATGCCTGTTCCTCTT  689

seq1  TGTCTGTGTGCCTTATACTCTGCCACATTAATGTTGCATGCATTTCTTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTGCCTTATACTCTGCCACATTAATGTTGCATGCATTTCTTCT  739

seq1  ACATCTCATTGTGCTCTCTCTGTTTCTGACTCTGTCTCTCTTTCTCATTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCATTGTGCTCTCTCTGTTTCTGACTCTGTCTCTCTTTCTCATTC  789

seq1  TCTGGCACTGTTTCTTTTTCTCTTTCTTGTGTGTCTCTGTGCCCACGTGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCACTGTTTCTTTTTCTCTTTCTTGTGTGTCTCTGTGCCCACGTGC  839

seq1  ACATGCATGTGCTTATGTTTTACATGTTTATGTTCCCATCCACACTTTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATGTGCTTATGTTTTACATGTTTATGTTCCCATCCACACTTTGG  889

seq1  AATCTAGGGGTCTGTGTTTTGGCCTGAGGATTTACCTGTATAAGAGTTTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGGGGTCTGTGTTTTGGCCTGAGGATTTACCTGTATAAGAGTTTC  939

seq1  AAGATGATGTTAGTGCTAAGGTCTTGGAGCCCCCACATAATTCAACACTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATGTTAGTGCTAAGGTCTTGGAGCCCCCACATAATTCAACACTG  989

seq1  TTCTTTGCCTATGTGGTCACAATTGTCCATACATTTGTATACCTTGGGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCCTATGTGGTCACAATTGTCCATACATTTGTATACCTTGGGAA  1039

seq1  GATTATAAAGCTGTGGTGCTGGCTGGTCTCATCTCCAGGATTATGTGTAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAAAGCTGTGGTGCTGGCTGGTCTCATCTCCAGGATTATGTGTAA  1089

seq1  GGTCTGCCACTGCAGTGTTACTTATCCAGGATTTAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCCACTGCAGTGTTACTTATCCAGGATTTAGAATTC  1130