BAC Information

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BAC

Clone NameB6Ng01-265B06
Chromosome14 (Build37)
Map Location 4,922,221 - 4,957,017
singlet/doubletdoublet
Overlap geneLOC100041317
Upstream geneLOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007
Downstream geneLOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265B06.bB6Ng01-265B06.g
ACCGA068822GA068823
length9391,126
definitionB6Ng01-265B06.b B6Ng01-265B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,922,221 - 4,923,002)(4,955,775 - 4,957,017)
sequence
gaattcaatgtagagattcctcagaaaattggaaatagatctatctgaag
acccatctgtaccactcttgagaatatacccaaaagcttcacctccataa
cacgggtgcaattgttccactatgttcactcataaaggccttatttgtga
tagtcagaagctggaagctacatagaggtcccatgacaggagaatggata
cagaaaatgtggttgatttacacaaggaaatactattcagctatgaagaa
tgagcacatcttgagttttgcagtcaaatggatggaactagaaaatacca
tcgtgagtgaagtaattcagacccaaaaggacatgcatggtatgtactca
caaataagtggatattatattagccaaaaaataaaaaaaaagaacagact
accagaaatacattccaagaactcaaaaaggtcaacaaactgaaatgccc
aagtaaggatgccttagtcccacctgggagagagaagaaagcaatcacca
gtgggagaaggagggaaggacctgggagggaaagtgacagggacagtggg
gagttggggagagaaggaaacctgatctggtattaggtgaggtaaaagaa
ctgaagtcctaagggccagcagaaagaatgtgaacaggcctctggagttc
ttaaagggaatgtagagagctgggttccaaaggacatagagttggatttg
catttccatttggttttctgtcatcccaaagcagttttgccctctatttg
atgaagtttttcctaatagtaaggacagataagcacgtggggtgggaggg
aacactttctgctttttggaggttcatgttccatttttggtgtcagagtt
ttcagaagtgccttttggaaattgtctgtgttctcggatttggcctgcct
cttattgatactggcatgctttgtggacctctgtctggg
gaattctcatggaggccagaagcatccagtacccctagagctggagttag
gaggcacccagtgtgggtgctccaaagcaaactccctgctttcagactcc
caaaccctgtctctgtctcaaacacacacatacgttatttttttatagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaaggaaggaaggaagaaagaaagaaaagacattaaaactggaaaagaag
aatgcagcttgcccagggacctgtgtaactcccagagccagggttataat
ccagattgcttcattaatgtgactacatatacagctgtttctatgttcta
aatgttggtatctccccagttcccgttgaagtcctaacttgcatgagcac
ctaaggaacgggtctggttatgatagcagattctgtataaatggaactgg
tgtcttgtaggtggaggggctggagagatggctcagtgactaagaacact
cagtgttcttcctgaggacccacgttcagtgcccagtacccaccttgggc
agctcacagctacctgtaacaccagttccaaaagatccaataccctcttc
tggcctcaggtacctgcatgaacatggtgcacagatagacaggcaggcac
acactcacataaaacaattcaaaacataaagcaagaaacagaataccatc
tccattgtcttataacattaaattctgtcctgtataataaaagtgttctc
tttgctcctgaatgcacagtataactagttctgtttttcaactcttccaa
gtcattgtgttttaaggatgtcctaaaaatacggtttgatctcacaacta
ccagaccatcctaagagcactacttttagcatgactgttttcattcattg
tgtgtattaatcagactaaagggctctaggaaagccttgctgccaccgcc
cctccccctcacttatttcttctcaggaacagtacactttagagattgtg
gggtgtgtcctctgttcactttaccatccacctctaggcttggcctcata
cagaggaggagtgaatacatgagtttggggtagagacaaaaagcaaggac
agcattgctcacagaacctcttacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4922221_4923002
seq2: B6Ng01-265B06.b_195_984

seq1  ATAGTCAGAAGCTGGAAGCTACATAGATGTCCCATGACAGAAGAATGGAT  50
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  ATAGTCAGAAGCTGGAAGCTACATAGAGGTCCCATGACAGGAGAATGGAT  50

seq1  ACAGAAAATGTGGTTGATTTACACAAGGAAATACTATTCAGCTATGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATGTGGTTGATTTACACAAGGAAATACTATTCAGCTATGAAGA  100

seq1  ATGAGCACATCTTGAGTTTTGCAGTCAAATGGATGGAACTAGAAAATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACATCTTGAGTTTTGCAGTCAAATGGATGGAACTAGAAAATACC  150

seq1  ATCGTGAGTGAAGTAATTCAGACCCAAAAGGACATGCATGGTATGTACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGAGTGAAGTAATTCAGACCCAAAAGGACATGCATGGTATGTACTC  200

seq1  ACAAATAAGTGGATATTATATTAGCCAA-----AAAAAAAAAGAACAGAC  245
      ||||||||||||||||||||||||||||     |||||||||||||||||
seq2  ACAAATAAGTGGATATTATATTAGCCAAAAAATAAAAAAAAAGAACAGAC  250

seq1  TACCAGAAATACATTCCAAGAACTCAAAAAGGTCAACAAACTGAAGTGCC  295
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TACCAGAAATACATTCCAAGAACTCAAAAAGGTCAACAAACTGAAATGCC  300

seq1  CAAGTAAGGATGCCTTAGTCCCACCTGGGAGAGAGAAGAAAGCAATCACC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAGGATGCCTTAGTCCCACCTGGGAGAGAGAAGAAAGCAATCACC  350

seq1  AGTGGGAGAAGGAGGGAAGGACCTGGGAGGGAAAGTGACAGGGACAGTGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGAAGGAGGGAAGGACCTGGGAGGGAAAGTGACAGGGACAGTGG  400

seq1  GGAGTTGGGGAGAGAAGGAAACCTGATCTGGTATTAGGTGAGGTAAAAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGGGAGAGAAGGAAACCTGATCTGGTATTAGGTGAGGTAAAAGA  450

seq1  ACTGAAGTCCTAAGGGCCAGCAGAAAGAATGTGAACAGGCCTCTGGAGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTCCTAAGGGCCAGCAGAAAGAATGTGAACAGGCCTCTGGAGTT  500

seq1  CTTAAAGGGAATGTAGAGAGCTGGGTTCCAAAGGACATAGAGTTGGA-TT  544
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTAAAGGGAATGTAGAGAGCTGGGTTCCAAAGGACATAGAGTTGGATTT  550

seq1  GCATTTCCATTTGGTTTTCTGTCATCCCAAAGCAGTTTTGCCCTCTATCT  594
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCATTTCCATTTGGTTTTCTGTCATCCCAAAGCAGTTTTGCCCTCTATTT  600

seq1  GATGAAG-TTTTCCTAATAGTAAGGACAGATAAGCACGT-GCGTGGGAGG  642
      ||||||| ||||||||||||||||||||||||||||||| | ||||||||
seq2  GATGAAGTTTTTCCTAATAGTAAGGACAGATAAGCACGTGGGGTGGGAGG  650

seq1  GAACACTTTCTGC-TTTTGGAGGTTCATGTTCCA-TTTTGGTGTCAGAGT  690
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  GAACACTTTCTGCTTTTTGGAGGTTCATGTTCCATTTTTGGTGTCAGAGT  700

seq1  TTTCAGAAGTGCCTTTCTGGAATTTGTCTGTGTTCT-GGATTTGGCCTGC  739
      |||||||||||||||| ||||| ||||||||||||| |||||||||||||
seq2  TTTCAGAAGTGCCTTT-TGGAAATTGTCTGTGTTCTCGGATTTGGCCTGC  749

seq1  CTTTTAGTGATACTGGCAAGGCTTTTGTGGA-CTCTAGTCTGGG  782
      || ||| ||||||||||| |   |||||||| |||| |||||||
seq2  CTCTTATTGATACTGGCATG--CTTTGTGGACCTCT-GTCTGGG  790

seq1: chr14_4955775_4957017
seq2: B6Ng01-265B06.g_67_1192 (reverse)

seq1  CTGT-AGAGG-TCTGTGAAGCAATGCTGCTCCTTGCTTTTTTTGTCTCCC  48
      |||| ||||| |||||| |||||||||| |||||||||||| | |||   
seq2  CTGTAAGAGGTTCTGTG-AGCAATGCTG-TCCTTGCTTTTTGTCTCT---  45

seq1  ACCCCAAACTC-TGTA-TCACTTCACTCCTCTGTATGAGGGCAAAGCCTT  96
      ||||||||||| |||| |||||   ||||||||||||| ||| |||||| 
seq2  ACCCCAAACTCATGTATTCACT--CCTCCTCTGTATGA-GGCCAAGCCT-  91

seq1  AGGAGGTGGATGGTAATGAGAAACAGAGGACACACCCCACAATCTCCTAA  146
        |||||||||||||| | | |||||||||||||||||||||||| ||||
seq2  -AGAGGTGGATGGTAAAGTG-AACAGAGGACACACCCCACAATCT-CTAA  138

seq1  AGTGTACTGTTCCCTGAGAAGGAAATAAGGTGAGGGGGAGGGGCAGTGGC  196
      ||||||||||| |||||||| ||||||| ||||||||||||||| |||||
seq2  AGTGTACTGTT-CCTGAGAA-GAAATAA-GTGAGGGGGAGGGGCGGTGGC  185

seq1  AGCAAGGATTTCCTAGAGCCCTTTAGTCTGATTAATACACACAATGAATG  246
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCTTTCCTAGAGCCCTTTAGTCTGATTAATACACACAATGAATG  235

seq1  AAAACAGTCATGGTAAAAGTAGTGCTCTTAGGATGGTCTGGTAGTAGTGA  296
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  AAAACAGTCATGCTAAAAGTAGTGCTCTTAGGATGGTCTGGTAGTTGTGA  285

seq1  GATCAAACCGTATTTTTAGGACATCCTTAAAACAGAATGACTTGGAAGAG  346
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GATCAAACCGTATTTTTAGGACATCCTTAAAACACAATGACTTGGAAGAG  335

seq1  TTGAAAAACAGAACTAGTTATACTGTGCATTCAGGAGCAAAGAGAACACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAACAGAACTAGTTATACTGTGCATTCAGGAGCAAAGAGAACACT  385

seq1  TTTATTATTCAGGACAGAATTTAATGTTATAAGACAATGGAGATGGTATT  446
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATACAGGACAGAATTTAATGTTATAAGACAATGGAGATGGTATT  435

seq1  CTGTTTCTTGCTTTATGTTTTGAATTGTTTTATGTGAGTGTGTGCCTGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTTGCTTTATGTTTTGAATTGTTTTATGTGAGTGTGTGCCTGCC  485

seq1  TGTCTATCTGTGCACCATGTTCATGCAGGTACCTGAGGCCAGAAGAGGGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATCTGTGCACCATGTTCATGCAGGTACCTGAGGCCAGAAGAGGGT  535

seq1  ATTGGATCTTTTGGAACTGGTGTTACAGGTAGCTGTGAGCTGCCCAAGGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATCTTTTGGAACTGGTGTTACAGGTAGCTGTGAGCTGCCCAAGGT  585

seq1  GGGTACTGGGCACTGAACGTGGGTCCTCAGGAAGAACACTGAGTGTTCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTGGGCACTGAACGTGGGTCCTCAGGAAGAACACTGAGTGTTCTT  635

seq1  AGTCACTGAGCCATCTCTCCAGCCCCTCCACCTACAAGACACCAGTTCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGAGCCATCTCTCCAGCCCCTCCACCTACAAGACACCAGTTCCA  685

seq1  TTTATACAGAATCTGCTATCATAACCAGACCCCTTCCTTAGGTGCTCATG  746
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTATACAGAATCTGCTATCATAACCAGACCCGTTCCTTAGGTGCTCATG  735

seq1  CAAGTTAGGACTTCAACGGGAACTGGGGAGATACCAACTTTTAGAACATA  796
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAGTTAGGACTTCAACGGGAACTGGGGAGATACCAACATTTAGAACATA  785

seq1  GAAACAGCTGTATATGTAGTCACATTAATGAAGCAATCTGGATTATAACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAACAGCTGTATATGTAGTCACATTAATGAAGCAATCTGGATTATAACC  835

seq1  CTGGCTCTGGGAGATACACAGGTCCCTGGGCAAGCTGCATTCTTCTTTTC  896
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCTGGGAGTTACACAGGTCCCTGGGCAAGCTGCATTCTTCTTTTC  885

seq1  CAGTTTTAATGTCTTTTCTTTCTTTCCTTCCTTCCTTCCTTCTTTCTTTC  946
      |||||||||||||||||||||||||     ||||||||||||   |||||
seq2  CAGTTTTAATGTCTTTTCTTTCTTT-----CTTCCTTCCTTC---CTTTC  927

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTCTTTCTT  996
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  977

seq1  TCTAT-AAAAAATGACGTATGTGTGTGTTTGAGACAGAGACAGGGACAGA  1045
      ||||| ||||||| ||||||||||||||||||||||||||||        
seq2  TCTATAAAAAAATAACGTATGTGTGTGTTTGAGACAGAGACA--------  1019

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG  1095
                                                        
seq2  --------------------------------------------------  1019

seq1  AAACACAACTTTTTGGAGTTGGGTTGCTCATTCTGCCAGATGGGTTTGGG  1145
                                               |||||||||
seq2  -----------------------------------------GGGTTTGGG  1028

seq1  AGTCTGAAAGCAGGGAGTTTGCTTTGGAGCACCCACACTGGGTGCTTCCT  1195
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGTCTGAAAGCAGGGAGTTTGCTTTGGAGCACCCACACTGGGTGCCTCCT  1078

seq1  AACTCCAGGTCTAGGGGTACTGGATGCTTCTGGCCTCCATGAGAATTC  1243
      |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGCTCTAGGGGTACTGGATGCTTCTGGCCTCCATGAGAATTC  1126