BAC Information

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BAC

Clone NameB6Ng01-269D07
Chromosome14 (Build37)
Map Location 109,175,066 - 109,394,598
singlet/doubletdoublet
Overlap geneSlitrk1
Upstream geneLOC668757, EG668761
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269D07.bB6Ng01-269D07.g
ACCGA071865GA071866
length1,0611,162
definitionB6Ng01-269D07.b B6Ng01-269D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,393,524 - 109,394,598)(109,175,066 - 109,176,218)
sequence
gaattctaaaagaagtagaaaaagaagggaagaagggagagagagagaga
aagagaagaaagagagaaagagaaagagaaagagaaagagaaagagaaag
agaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagag
gaagaggaagaggaagaggaagaggaagagaaagagagaaagagaaagaa
agagaaagagaaagaggaagagagagagagagagagagagagagaaagag
aaagagaaagagaaagggaaagagaaagagaaagagaaagagaaagagaa
agagaaagagaaagagaaagagaaagagaaagagaaagagaatgcttgta
aacatatgtgtccacagaccatactgttggagggactcttcgaaaggggc
actgttattctgagtgctaacttgacaatcagagatcactgtgactacat
caaagcccaataatatttgatgaatgtctaaaccagcctataaaaagatt
tttccagattgttccagagggaatgctttaaatatgctttttttttaaag
tgtgaatgcacaaattagtatccccagtgtgtctcaggaagaaaatgcct
cagtattatgacaatggctgaatgattttctcccccaaggacaatctaaa
gcaactcacactcatctgtacctcaagtttgagggtaaaaaccctggcta
gctccagcagccacacctggctatactctgccacctgttctgaataccaa
ttacagagtcaaagatgatgagaggagatttagtcaatatctagtttggg
gtgggaatgcagagatttaaaccttccaaatatgagcataaatattaagc
atttggaaaagagactgcaaatatttatacttaagtgatctggtttattt
tctcagctatggttcctcaggtgagctagacagtccctcttgcttgaggg
gacagaaactattagttgatgatgtctcacactagagtgcagtcctgtca
tcatggatatgctttctgtagtactttctccttgagctctgcctttctca
gttcaagtgac
gaattccataagaaagagacaggggcagataaaaggaatggggagacaca
ggggaaggaagaaaattatttgagttttaatgactccaaaaattcatagt
agtacaagggaatagggagatagggatgggaaagcacttccaaggaattt
gtcttgtctagttatactagaatgttattcttgctctttattctgtgata
tttaaaatactagggacagttactgtgtgaaagaaagcaagcgatggtga
aaggcaatagagcttttaatgggccttgttttcctgtcaccttaaagtag
aaggattatgggtaaaatcaaaagaattcctacattaaaacaacaacaac
aacaaaacaatcttactaacctatataaacactgggctaaagaatcaagt
agatttttatcaagagaagaaagacatgcaaatattcatggttatagtat
aattgggtagaaatggaatttcccttttttaaaagtatcaatgagaagtc
aatacattttaggtctcatctttattacatcatgattaaagataatacta
tgttttacaatttaaattttgttaagtaactagattttattttacacaat
attacttcctacattacttttggaaaaatagagaaaatatttaataatat
ctcatgttccatgagagaaaaaattgataatgccagccagtttatacata
taaatatgttgtaattatgaggataaatgtaatttaaaaaattaaattat
atactggggcatacttgtaaatatgtatcatctatatgacagaatcaagt
tcagtaaatatttcacattttattagatattatttgtttaaaaattttaa
ggtatatttttgaatatgttcaaagaaatattcaaattaatatgtaacaa
aggttaaatatttaccaaattttattgctaatcattttattctcaagcta
gattaatgtggtttgaaaagtactgattttctactttccaaaataatcat
tttatattacattcagcctgtgtaattcataatattgttattcattatca
caatgtgttatacatgatatcttgatgtggagttgcatttaggagttatg
ggaaaaattgccaccaaatctgaaaaactgaaaacttagagatgtcactt
accgatgttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109393524_109394598
seq2: B6Ng01-269D07.b_45_1105 (reverse)

seq1  GTCACTTTGGACCTGAGAAAAAGCAGAGCCTCAAGGGAGAAAGTTACTAC  50
      |||||||  || ||||| ||| |||||| ||||| |||||||| ||||||
seq2  GTCACTT--GAACTGAG-AAAGGCAGAG-CTCAA-GGAGAAAG-TACTAC  44

seq1  AGGAAAGGCAATATCCATGATGACAGGACTGCACTCTAAGTGTGAGACAT  100
      | |||||   ||||||||||||||||||||||||||| ||||||||||||
seq2  A-GAAAG--CATATCCATGATGACAGGACTGCACTCT-AGTGTGAGACAT  90

seq1  CATCAACTAATAGTTTCTTGTCCCCTCAAGCAAGAGGGACTTGTCTAGCT  150
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  CATCAACTAATAGTTTC-TGTCCCCTCAAGCAAGAGGGAC-TGTCTAGCT  138

seq1  CACCCTGAGGAACCATAGCTGAGAAAATAAACCAGATCACTTAAGTATAA  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-CCTGAGGAACCATAGCTGAGAAAATAAACCAGATCACTTAAGTATAA  187

seq1  ATATTTTGCAGTCTCTTTTCCAAATGCTTAATATTTATGCTCATATTTGG  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATA-TTTGCAGTCTCTTTTCCAAATGCTTAATATTTATGCTCATATTTGG  236

seq1  AAGGTTTAAATCTCTGCATTCCCACCCCAAACTAGATATTGACTAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTAAATCTCTGCATTCCCACCCCAAACTAGATATTGACTAAATCT  286

seq1  CCTCTCATCATCTTTGACTCTGTAATTGGTATTCAGAACAGGTGGCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATCATCTTTGACTCTGTAATTGGTATTCAGAACAGGTGGCAGAG  336

seq1  TATAGCCAGGTGTGGCTGCTGGAGCTAGCCAGGGTTTTTACCCTCAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCAGGTGTGGCTGCTGGAGCTAGCCAGGGTTTTTACCCTCAAACT  386

seq1  TGAGGTACAGATGAGTGTGAGTTGCTTTAGATTGTCCTTGGGGGAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTACAGATGAGTGTGAGTTGCTTTAGATTGTCCTTGGGGGAGAAAA  436

seq1  TCATTCAGCCATTGTCATAATACTGAGGCATTTTCTTCCTGAGACACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGCCATTGTCATAATACTGAGGCATTTTCTTCCTGAGACACACT  486

seq1  GGGGATACTAATTTGTGCATTCACACTTTAAAAAAAAAGCATATTTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATACTAATTTGTGCATTCACACTTTAAAAAAAAAGCATATTTAAAG  536

seq1  CATTCCCTCTGGAACAATCTGGAAAAATCTTTTTATAGGCTGGTTTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTCTGGAACAATCTGGAAAAATCTTTTTATAGGCTGGTTTAGAC  586

seq1  ATTCATCAAATATTATTGGGCTTTGATGTAGTCACAGTGATCTCTGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAAATATTATTGGGCTTTGATGTAGTCACAGTGATCTCTGATTG  636

seq1  TCAAGTTAGCACTCAGAATAACAGTGCCCCTTTCGAAGAGTCCCTCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTAGCACTCAGAATAACAGTGCCCCTTTCGAAGAGTCCCTCCAAC  686

seq1  AGTATGGTCTGTGGACACATATGTTTACAAGCATTCTCTTTCTCTTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGTCTGTGGACACATATGTTTACAAGCATTCTCTTTCTCTTTCTC  736

seq1  TTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTT  786

seq1  TCTCTTTCCCTTTCTCTTTCTCTTTCTCTTTCTCTCTCTCTCTCTCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCCTTTCTCTTTCTCTTTCTCTTTCTCTCTCTCTCTCTCTCTC  836

seq1  TCTCTCTTCCTCTTTCTCTTTCTCTTTCTTTCTCTTTCTCTCTTTCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTCCTCTTTCTCTTTCTCTTTCTTTCTCTTTCTCTCTTTCTCTT  886

seq1  CCTCTTCCTCTTCCTCTTCCTCTTCCTCTTTCTCTTTCTCTTTCTCTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCTCTTCCTCTTCCTCTTCCTCTTTCTCTTTCTCTTTCTCTTTC  936

seq1  TCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTC  986

seq1  TTTCTCTTTCTCTCTTTCTTCTCTTTCTCTCTCTCTCTCCCTTCTTCCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCTCTCTTTCTTCTCTTTCTCTCTCTCTCTCCCTTCTTCCCT  1036

seq1  TCTTTTTCTACTTCTTTTAGAATTC  1075
      |||||||||||||||||||||||||
seq2  TCTTTTTCTACTTCTTTTAGAATTC  1061

seq1: chr14_109175066_109176218
seq2: B6Ng01-269D07.g_66_1227

seq1  GAATTCCATAAGAAAGAGACAGGGGCAGATAAAAGGAATGGGGAGACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAGAAAGAGACAGGGGCAGATAAAAGGAATGGGGAGACACA  50

seq1  GGGGAAGGAAGAAAATTATTTGAGTTTTAATGACTCCAAAAATTCATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGAAGAAAATTATTTGAGTTTTAATGACTCCAAAAATTCATAGT  100

seq1  AGTACAAGGGAATAGGGAGATAGGGATGGGAAAGCACTTCCAAGGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGGGAATAGGGAGATAGGGATGGGAAAGCACTTCCAAGGAATTT  150

seq1  GTCTTGTCTAGTTATACTAGAATGTTATTCTTGCTCTTTATTCTGTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCTAGTTATACTAGAATGTTATTCTTGCTCTTTATTCTGTGATA  200

seq1  TTTAAAATACTAGGGACAGTTACTGTGTGAAAGAAAGCAAGCGATGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATACTAGGGACAGTTACTGTGTGAAAGAAAGCAAGCGATGGTGA  250

seq1  AAGGCAATAGAGCTTTTAATGGGCCTTGTTTTCCTGTCACCTTAAAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATAGAGCTTTTAATGGGCCTTGTTTTCCTGTCACCTTAAAGTAG  300

seq1  AAGGATTATGGGTAAAATCAAAAGAATTCCTACATTAAAACAACAACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTATGGGTAAAATCAAAAGAATTCCTACATTAAAACAACAACAAC  350

seq1  AACAAAACAATCTTACTAACCTATATAAACACTGGGCTAAAGAATCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAATCTTACTAACCTATATAAACACTGGGCTAAAGAATCAAGT  400

seq1  AGATTTTTATCAAGAGAAGAAAGACATGCAAATATTCATGGTTATAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTATCAAGAGAAGAAAGACATGCAAATATTCATGGTTATAGTAT  450

seq1  AATTGGGTAGAAATGGAATTTCCCTTTTTTAAAAGTATCAATGAGAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGTAGAAATGGAATTTCCCTTTTTTAAAAGTATCAATGAGAAGTC  500

seq1  AATACATTTTAGGTCTCATCTTTATTACATCATGATTAAAGATAATACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTTTAGGTCTCATCTTTATTACATCATGATTAAAGATAATACTA  550

seq1  TGTTTTACAATTTAAATTTTGTTAAGTAACTAGATTTTATTTTACACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACAATTTAAATTTTGTTAAGTAACTAGATTTTATTTTACACAAT  600

seq1  ATTACTTCCTACATTACTTTTGGAAAAATAGAGAAAATATTTAATAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCCTACATTACTTTTGGAAAAATAGAGAAAATATTTAATAATAT  650

seq1  CTCATGTTCCATGAGAGAAAAAATTGATAATGCCAGCCAGTTTATACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTCCATGAGAGAAAAAATTGATAATGCCAGCCAGTTTATACATA  700

seq1  TAAATATGTTGTAATTATGAGGATAAATGTAATTTAAAAAATTAAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGTTGTAATTATGAGGATAAATGTAATTTAAAAAATTAAATTAT  750

seq1  ATACTGGGGCATACTTGTAAATATGTATCATCTATATGACAGAATCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGGGCATACTTGTAAATATGTATCATCTATATGACAGAATCAAGT  800

seq1  TCAGTAAATA-TTCACATTTTATTAGATATTATTTGTTTAAAAA-TTTAA  848
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  TCAGTAAATATTTCACATTTTATTAGATATTATTTGTTTAAAAATTTTAA  850

seq1  GGTATA-TTTTGAATATGTTCAAAGAAATATTCAAATTAATATGTAACAA  897
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATTTTTGAATATGTTCAAAGAAATATTCAAATTAATATGTAACAA  900

seq1  AGGTTAAATATTTACCAAATTTTATTGCT-ATCATTTTATTCTCAAGCTA  946
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGTTAAATATTTACCAAATTTTATTGCTAATCATTTTATTCTCAAGCTA  950

seq1  GATT-ATGTGGTTTGAAAAGTACTGATTTTCTACTTTCCAAATTAATCA-  994
      |||| ||||||||||||||||||||||||||||||||||||| |||||| 
seq2  GATTAATGTGGTTTGAAAAGTACTGATTTTCTACTTTCCAAAATAATCAT  1000

seq1  TTTATATTACATTCAGCCCTGTTGTAA-TCATAATAATGTTATTCATTAT  1043
      |||||||||||||||| |||| ||||| |||||||| |||||||||||| 
seq2  TTTATATTACATTCAG-CCTG-TGTAATTCATAATATTGTTATTCATTA-  1047

seq1  TCACAATGTGTTATACATGATTATCTTGATGT-GAGTTGCATTTA-GAGT  1091
      |||||||||||||||||||| ||||||||||| |||||||||||| ||||
seq2  TCACAATGTGTTATACATGA-TATCTTGATGTGGAGTTGCATTTAGGAGT  1096

seq1  AATGG--AAAAATGCAACCAAACCTGAAAAA-TGAAAACTAGAAGATAGC  1138
       ||||  |||| ||| |||||| |||||||| ||||||||   ||||  |
seq2  TATGGGAAAAATTGCCACCAAATCTGAAAAACTGAAAACTTAGAGATGTC  1146

seq1  ACTTACC-ATGTTAGA  1153
      ||||||| ||||||||
seq2  ACTTACCGATGTTAGA  1162